View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14738_low_1 (Length: 706)
Name: NF14738_low_1
Description: NF14738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14738_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 654; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 15 - 691
Target Start/End: Complemental strand, 44048101 - 44047422
Alignment:
| Q |
15 |
caaagggtcattgttgaaactattgttcgcttactaccaactcaatctaggaaaagctcagttccaatagcatttctttcatgtttattgaaaactgcaa |
114 |
Q |
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| T |
44048101 |
caaagggtcattgttgaaactattgttcgcttactaccaactcaatctaggaaaagctcagttccaatagcatttctttcatgtttattgaaaactgcaa |
44048002 |
T |
|
| Q |
115 |
tagcaacattagtatcaacttcttgtagaagtgatttggagaggcgaattggtttacaactcgatcaggcaattcttgaagacatacttattccaacgaa |
214 |
Q |
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| T |
44048001 |
tagcaacattagtatcaacttcttgtagaagtgatttggagaggcgaattggtttacaactcgatcaggcaattcttgaagacatacttattccaacgaa |
44047902 |
T |
|
| Q |
215 |
ttcaccttcgagtgctcacaacacaatgtatgatatagattcaattttgaggatcttttctacttttctgaatttggacgaggtggatgatgaagacagt |
314 |
Q |
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| T |
44047901 |
ttcaccttcgagtgctcacaacacaatgtatgatatagattcaattttgaggatcttttctacttttctgaatttggacgaggtggatgatgaagacagt |
44047802 |
T |
|
| Q |
315 |
gacttcagagatgaaaatcaaatgatgtacgagtatgaatttgacagtcctggatctccaaaacaaagctcaattcttaaggtatccaaattacttgaca |
414 |
Q |
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| T |
44047801 |
gacttcagagatgaaaatcaaatgatgtacgagtatgaatttgacagtcctggatctccaaaacaaagctcaattcttaaggtatccaaattacttgaca |
44047702 |
T |
|
| Q |
415 |
attttctcgctgaagtagcactagactcaaacttgttgccatcaaaattcatagcacttgcagaactacttccggatcatgctcgcgttacaagcgatgg |
514 |
Q |
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| T |
44047701 |
attttctcgctgaagtagcactagactcaaacttgttgccatcaaaattcatagcacttgcagaactacttccggatcatgcccgcgttacaagcgatgg |
44047602 |
T |
|
| Q |
515 |
actctatcgagctgttgacatcttcctcaaggttcgaactcaaaatcgagtttcttctattgaaaacactattaagaatttcattactcttctgtcttgt |
614 |
Q |
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| T |
44047601 |
actctatcgagctgttgacatcttcctcaaggttagaactcaaaatcgagtttcttctattgaaaacactattaagaatttcattactcttctgtcttgt |
44047502 |
T |
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| Q |
615 |
aaaaatgttttacacatacgtttatttatagcccataacgttagaaaataatattatga---cacaagagagtaaaattt |
691 |
Q |
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| T |
44047501 |
aaaaatgttttacacatacgtttatttatagcccataacgttagaaaataatattatgagacaacaagagagtaaaattt |
44047422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 348 - 547
Target Start/End: Original strand, 39824240 - 39824439
Alignment:
| Q |
348 |
tatgaatttgacagtcctggatctccaaaacaaagctcaattcttaaggtatccaaattacttgacaattttctcgctgaagtagcactagactcaaact |
447 |
Q |
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||||| ||||| || || ||||| ||||||||||||||||||||||||||||||||||| || || || | ||| ||||||||||| ||||| |||||| |
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| T |
39824240 |
tatgattttgatagcccaggatcgccaaaacaaagctcaattcttaaggtatccaaattgctggataactatcttgctgaagtagctttagacccaaact |
39824339 |
T |
|
| Q |
448 |
tgttgccatcaaaattcatagcacttgcagaactacttccggatcatgctcgcgttacaagcgatggactctatcgagctgttgacatcttcctcaaggt |
547 |
Q |
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|| | |||||||| ||||| ||||||| || ||||||| |||||||| || || |||||||||||||||| |||| || || |||||||| ||||| |
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| T |
39824340 |
tgcttccatcaaagttcatttcacttgctgagttacttcctgatcatgcgcgaattgtaagcgatggactctatagagcagtcgatatcttccttaaggt |
39824439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 39823907 - 39824103
Alignment:
| Q |
15 |
caaagggtcattgttgaaactattgttcgcttactaccaactcaatctaggaaaagctcag-ttccaatagcatttctttcatgtttattgaaaactgca |
113 |
Q |
| |
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||||||||| |||||||||| || | | ||||||||||||||||| |||||||| |||| |||||||||| ||||| ||| |||| |||||| ||||| |
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| T |
39823907 |
caaagggtccttgttgaaacaataactagtttactaccaactcaatcaaggaaaag-tcagattccaatagcttttctctcaagtttgttgaaatctgca |
39824005 |
T |
|
| Q |
114 |
atagcaacattagtatcaacttcttgtagaagtgatttggagaggcgaattggtttacaactcgatcaggcaattcttgaagacatacttattccaac |
211 |
Q |
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|||||| ||| |||||| |||||||||||| |||||||||||| | |||||| | ||||| || || |||||||||||||| || || |||||||| |
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| T |
39824006 |
atagcatcatcagtatctacttcttgtagatctgatttggagagaaggattggtctgcaacttgaccaagcaattcttgaagatattctgattccaac |
39824103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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