View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14738_low_12 (Length: 357)
Name: NF14738_low_12
Description: NF14738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14738_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 3433372 - 3433033
Alignment:
| Q |
1 |
ctcctaatggcatgcaatttccctccatttacaccgaccgtacatctcctctttacgatgaactccgaaatgcaaatcatcaacctccaacactcataga |
100 |
Q |
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| T |
3433372 |
ctcctaatggcatgcaatttccctccatttacaccgaccgtacatctcctctttacgatgaactccgaaatgcaaatcatcaacctccaacactcataga |
3433273 |
T |
|
| Q |
101 |
ctttaactatgtacctggcgatgatagcgatgaagttgatgaaaatgaaaggatctccacaaaccttactataatgtatagacaggttgtgtctggtgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433272 |
ctttaactatgtacctggcgatgatagcgatgaagttgatgaaaatgaaaggatctccacaaaccttactataatgtatagacaggttgtgtctggtgga |
3433173 |
T |
|
| Q |
201 |
aaaacctcaagacttttcctcggaaacccttaccgtgctggagatgcaccggatcccggtgctggatccgtagagattgttccacataatatagttcatc |
300 |
Q |
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| T |
3433172 |
aaaacctcaacacttttcctcggaaacccttaccgtgctggagatgcaccggatcccggtgctggatccgtagagattgttccacataatatagttcatc |
3433073 |
T |
|
| Q |
301 |
tatggagtggtgatgatacgcaacctaactttgaagacat |
340 |
Q |
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| T |
3433072 |
tatggagtggtgatgatacgcaacctaactttgaagacat |
3433033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 3427181 - 3426851
Alignment:
| Q |
1 |
ctcctaatggcatgcaatttccctccatttacaccgaccgtacatctcctctttacgatgaactccgaaatgcaaatcatcaacctccaacactcataga |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427181 |
ctccaaatggcatgcaatttccctccatttacaccgaccgtacatctcctctttacgatgaactccgaaatgcaaatcatcaacctccaacactcataga |
3427082 |
T |
|
| Q |
101 |
ctttaactatgtacctggcgatgatagcgatgaagttgatgaaaatgaaaggatctccacaaaccttactataatgtatagacaggttgtgtctggtgga |
200 |
Q |
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| T |
3427081 |
cttaaacta------tgacggtga---cgatgaaaatgatgaaaatgaaagaatctccacaaaccttactataatgtatagacaacttgtctcaaatgga |
3426991 |
T |
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| Q |
201 |
aaaacctcaagacttttcctcggaaacccttaccgtgctggagatgcaccggatcccggtgctggatccgtagagattgttccacataatatagttcatc |
300 |
Q |
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||||| |||| || |||||||||| | |||||||||| || ||| ||| ||||| |||||||||||| |||||| |||||||||| ||||||| |
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| T |
3426990 |
aaaacttcaactctattcctcggaagctcttaccgtgccggtgatcaacccgatccaggtgctggatccatagagaatgttccacatggaccagttcata |
3426891 |
T |
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| Q |
301 |
tatggagtggtgatgatacgcaacctaactttgaagacat |
340 |
Q |
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| T |
3426890 |
gatggagtggtgataatacgcaacctaactttgaaaacat |
3426851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 11897095 - 11897420
Alignment:
| Q |
1 |
ctcctaatggcatgcaatttccctccatttacaccgaccgtacatctcctctttacgatgaactccgaaatgcaaatcatcaacctccaacactcataga |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
11897095 |
ctcctaatggcatgcgatttccctccatttacaccgaccctacatctcctctttacgacaaactccgaaatgcaaaacatcaacctccaacactcataga |
11897194 |
T |
|
| Q |
101 |
ctttaactatgtacctggcgatgatagcgatgaagttgatgaaaatgaaaggatctccacaaaccttactataatgtatagacaggttgtgtctggtgga |
200 |
Q |
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||| ||||||| | ||||||| | |||||||| || ||||||| | | ||| ||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
11897195 |
cttcaactatggtcactgcgatgacatcgatgaagatggtgaaaataacataatccacacaaaccttactataatgtatagacaggttgtgtctagagga |
11897294 |
T |
|
| Q |
201 |
aaaacctcaagacttttcctcggaaacccttaccgtgctggagatgcaccggatcccggtgctggatccgtagagattgttccacataatatagttcatc |
300 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||| || |||| | ||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
11897295 |
aaaaactcaagacttttcctcggatacccttaccgtgctggaggtgtaccgaa---atgtgctggatccgtagagattgttcctcataatacagttcata |
11897391 |
T |
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| Q |
301 |
tatggagtggtgatgatacgcaacctaac |
329 |
Q |
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|||||||||||| || |||||||||| |
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| T |
11897392 |
attggagtggtgatactaggcaacctaac |
11897420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 329
Target Start/End: Original strand, 11912455 - 11912513
Alignment:
| Q |
271 |
tagagattgttccacataatatagttcatctatggagtggtgatgatacgcaacctaac |
329 |
Q |
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| T |
11912455 |
tagagaatgttccacataatacaattcatacatggagtggtgataataggcaacctaac |
11912513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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