View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14738_low_3 (Length: 532)
Name: NF14738_low_3
Description: NF14738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14738_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 15 - 450
Target Start/End: Complemental strand, 32288004 - 32287567
Alignment:
| Q |
15 |
agataatgcgatgttattatatggatcaattcatattcaaaggaaatgcattatatatacttgagaggttaattaagcggtgagtgaggagtagcattga |
114 |
Q |
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| T |
32288004 |
agatcatgcgatgttattatatggatcaattcatattcaagggaaaggcattatatatacttgagaggttaattaagcggtgagtgaggagtagcattga |
32287905 |
T |
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| Q |
115 |
tgccaccgtggcttatacagcatctgccacgttgggttggatggattggacacactcaacacgtatttatggtctcaaattgataacaaattctggtatc |
214 |
Q |
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| T |
32287904 |
tgccaccgtggcttatacagcatctgccacgttgggttggatggattggacacactcgacacgtatgtatggtctcaaattgataacaaattctggtatc |
32287805 |
T |
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| Q |
215 |
atcggtgcggtgctcggaggaaggagaaggactcggaaatgtggaaaatatatttggccacaaataaaaaattaaggagatcttaacctttaatttccac |
314 |
Q |
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| T |
32287804 |
atcggtgcggtgctcggaggaaggagaaggactcggaaatgtggaaaatatatttggccacaaataaaaaattaaggagatcttaacctttaatttccac |
32287705 |
T |
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| Q |
315 |
attattaataatcaaaagtaatttaccaaacagagcctacatctaaattaagttcaannnnnnnnagaagtaaaataagaggggaggtttccgcttag-- |
412 |
Q |
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| T |
32287704 |
attattaataatcaaaagtaatttaccaaacagagcctatatctaaattaagttcaa-tttttttagaagtaaaataaaaggggaggttcccgcttaggt |
32287606 |
T |
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| Q |
413 |
-gtcagttggtagggagtagggacattgtataatttatg |
450 |
Q |
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| T |
32287605 |
tgttagttggtagggagtagggacattgcataatttatg |
32287567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 515
Target Start/End: Complemental strand, 32287503 - 32287461
Alignment:
| Q |
473 |
attaaaccaaaaataaataaataagagttgagagattagtaaa |
515 |
Q |
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| T |
32287503 |
attagaccaaaaataaataaataagaggggagagattagtaaa |
32287461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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