View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14738_low_4 (Length: 522)
Name: NF14738_low_4
Description: NF14738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14738_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Complemental strand, 49247143 - 49246640
Alignment:
| Q |
1 |
tttaaagtatgtgtgcaaattaaactcatattcatattgagaagctcatgagcagaacaagtaacagagattaaaaaacaccttctcaggtggactatgc |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49247143 |
tttaaagtatgtgtacaaattaaactcaaattcgtattgagaagctcatgagcagaacaagtaacagagattaaaaaacaccttctcaggtggactatgc |
49247044 |
T |
|
| Q |
101 |
aatcgtatgcgcttctcatagttgaagaaaaccttgcttctgtaggaatctgcaacaaaaagttgattatttagtgagcttgaattaattaagactgctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49247043 |
aatcgtatgcgcttctcatagttgaagaaaaccttgcttctgtaggaatctgcaacaaaaagttgattatttagtgagcttgaattaattaagactgctt |
49246944 |
T |
|
| Q |
201 |
aaatttagtattctcaatgcaccattaatgcttaaattatgttatataaatacattacatgcctccaaaaagtaagttattattggaaccctcaggaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49246943 |
aaatttagtattctcaatgcaccattaatgcttaaattatgttatataaatacattacatgcctccaaaaagtaagttattattggaaccctcaggaaga |
49246844 |
T |
|
| Q |
301 |
gatgattttctaaggatattgtttaagaaagccgagtcgaagctggaattggttttggagaagtaacaaacaaaagcaagagctgagccaacaactaagg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49246843 |
gatgattttctaaggatattgtttaagaaagccgagtcgaagctggaattggttttggagaagtaacacacaaaagcaagagctgagccaacaactaagg |
49246744 |
T |
|
| Q |
401 |
ctgaaacccactttggatattgtggtggccgtgggttggtattcagtaacgatggtggagaggaagaaaactgtgaagacgaagtttggaaacgttggat |
500 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49246743 |
ctgaaacccactttcgatattgtggtggccgtgggttggtattcggtaacgatggtggagaggaagaaaactgtgaagacgaagtttggaaacgttggat |
49246644 |
T |
|
| Q |
501 |
gagg |
504 |
Q |
| |
|
|||| |
|
|
| T |
49246643 |
gagg |
49246640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University