View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14738_low_5 (Length: 488)

Name: NF14738_low_5
Description: NF14738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14738_low_5
NF14738_low_5
[»] chr6 (15 HSPs)
chr6 (1-473)||(6714195-6714677)
chr6 (317-409)||(10388230-10388322)
chr6 (327-398)||(30122818-30122889)
chr6 (316-421)||(16434804-16434908)
chr6 (316-422)||(67338-67444)
chr6 (328-418)||(67615-67705)
chr6 (327-421)||(30847624-30847718)
chr6 (328-423)||(10388496-10388591)
chr6 (342-417)||(6169375-6169450)
chr6 (335-418)||(9530527-9530610)
chr6 (327-378)||(3687867-3687918)
chr6 (332-398)||(35072198-35072264)
chr6 (392-425)||(2182455-2182488)
chr6 (319-399)||(2121883-2121963)
chr6 (346-418)||(3687627-3687699)
[»] chr7 (23 HSPs)
chr7 (327-422)||(26073418-26073513)
chr7 (327-422)||(26097205-26097300)
chr7 (327-423)||(32047231-32047327)
chr7 (327-422)||(33189881-33189976)
chr7 (316-422)||(35315841-35315947)
chr7 (327-417)||(35316117-35316207)
chr7 (341-426)||(7511074-7511159)
chr7 (335-422)||(21297712-21297799)
chr7 (327-422)||(36642606-36642701)
chr7 (316-422)||(33190145-33190251)
chr7 (327-423)||(26073141-26073237)
chr7 (327-423)||(26096928-26097024)
chr7 (314-412)||(5964230-5964328)
chr7 (327-420)||(3248298-3248391)
chr7 (327-396)||(25658412-25658481)
chr7 (327-392)||(32056867-32056932)
chr7 (329-409)||(47334-47414)
chr7 (334-421)||(5963990-5964077)
chr7 (314-398)||(32056649-32056732)
chr7 (316-378)||(527461-527523)
chr7 (317-396)||(40089031-40089111)
chr7 (317-378)||(3248436-3248497)
chr7 (327-423)||(42709892-42709988)
[»] chr8 (16 HSPs)
chr8 (327-422)||(5074526-5074621)
chr8 (316-394)||(23488849-23488927)
chr8 (317-422)||(23488960-23489065)
chr8 (330-421)||(11732593-11732684)
chr8 (317-423)||(16997091-16997197)
chr8 (327-422)||(34153485-34153579)
chr8 (327-421)||(7905633-7905727)
chr8 (327-396)||(41480781-41480850)
chr8 (317-421)||(42950606-42950710)
chr8 (316-398)||(38225455-38225537)
chr8 (316-421)||(42950341-42950446)
chr8 (327-410)||(42026954-42027037)
chr8 (327-397)||(38225707-38225777)
chr8 (317-399)||(42027208-42027290)
chr8 (329-378)||(13577791-13577840)
chr8 (317-409)||(5074264-5074355)
[»] chr4 (24 HSPs)
chr4 (327-421)||(4872546-4872640)
chr4 (317-422)||(51103629-51103734)
chr4 (327-421)||(4892385-4892479)
chr4 (327-409)||(51103376-51103458)
chr4 (316-424)||(4892647-4892755)
chr4 (327-422)||(39864089-39864184)
chr4 (316-421)||(35251649-35251754)
chr4 (327-427)||(22886695-22886795)
chr4 (327-427)||(22938359-22938459)
chr4 (339-398)||(35004495-35004554)
chr4 (316-428)||(22886410-22886525)
chr4 (316-428)||(22938074-22938189)
chr4 (327-420)||(36825072-36825165)
chr4 (327-384)||(44137403-44137460)
chr4 (327-368)||(45302598-45302639)
chr4 (342-394)||(43049385-43049437)
chr4 (317-421)||(45302323-45302427)
chr4 (341-398)||(40681720-40681777)
chr4 (331-402)||(33614396-33614467)
chr4 (347-390)||(42077056-42077099)
chr4 (327-394)||(54511587-54511654)
chr4 (366-396)||(5808241-5808271)
chr4 (327-398)||(30808387-30808460)
chr4 (332-424)||(4872824-4872916)
[»] chr3 (25 HSPs)
chr3 (316-422)||(33140540-33140646)
chr3 (316-421)||(43804151-43804256)
chr3 (327-422)||(46164093-46164188)
chr3 (316-421)||(46163819-46163924)
chr3 (327-422)||(36012688-36012783)
chr3 (317-422)||(32808147-32808252)
chr3 (342-421)||(12088989-12089068)
chr3 (327-426)||(55213961-55214059)
chr3 (316-398)||(26244881-26244963)
chr3 (327-398)||(26121974-26122045)
chr3 (327-407)||(7565752-7565832)
chr3 (327-421)||(45708715-45708809)
chr3 (327-421)||(32808427-32808523)
chr3 (327-398)||(33140299-33140370)
chr3 (327-422)||(39840635-39840730)
chr3 (316-398)||(26244184-26244266)
chr3 (327-384)||(2051504-2051561)
chr3 (327-423)||(55447190-55447286)
chr3 (327-426)||(2051741-2051840)
chr3 (316-414)||(3157668-3157766)
chr3 (327-396)||(3157934-3158004)
chr3 (329-399)||(12015052-12015122)
chr3 (327-392)||(7565620-7565684)
chr3 (330-423)||(39840903-39840996)
chr3 (327-395)||(43031396-43031464)
[»] chr2 (11 HSPs)
chr2 (321-424)||(26407670-26407773)
chr2 (317-420)||(36937767-36937870)
chr2 (316-409)||(29469527-29469620)
chr2 (345-421)||(30786444-30786520)
chr2 (327-423)||(36937502-36937596)
chr2 (327-398)||(26407424-26407495)
chr2 (342-421)||(18143998-18144080)
chr2 (327-396)||(29166979-29167048)
chr2 (327-384)||(32013986-32014043)
chr2 (332-428)||(22191527-22191623)
chr2 (365-421)||(29166682-29166738)
[»] chr5 (8 HSPs)
chr5 (317-396)||(22843767-22843846)
chr5 (327-421)||(17990743-17990837)
chr5 (341-421)||(8999818-8999898)
chr5 (327-421)||(36151006-36151100)
chr5 (327-420)||(13932834-13932927)
chr5 (354-422)||(11275823-11275891)
chr5 (327-393)||(22843904-22843969)
chr5 (327-424)||(8840028-8840125)
[»] chr1 (20 HSPs)
chr1 (327-422)||(7481196-7481291)
chr1 (327-398)||(27133842-27133913)
chr1 (327-421)||(23329296-23329390)
chr1 (327-380)||(4066923-4066976)
chr1 (357-418)||(38208522-38208583)
chr1 (316-424)||(4067143-4067249)
chr1 (345-421)||(49784816-49784892)
chr1 (327-426)||(28504683-28504782)
chr1 (327-422)||(33321310-33321405)
chr1 (327-425)||(7481031-7481128)
chr1 (327-385)||(33321071-33321129)
chr1 (332-421)||(2464189-2464278)
chr1 (316-390)||(27134116-27134190)
chr1 (316-398)||(38208279-38208361)
chr1 (344-417)||(34535586-34535659)
chr1 (327-420)||(46410831-46410924)
chr1 (317-421)||(6219602-6219706)
chr1 (317-421)||(20993854-20993958)
chr1 (316-398)||(49784544-49784624)
chr1 (330-384)||(15395207-15395261)
[»] scaffold0024 (2 HSPs)
scaffold0024 (327-428)||(70837-70937)
scaffold0024 (327-395)||(70614-70682)
[»] scaffold0022 (1 HSPs)
scaffold0022 (327-398)||(122549-122620)


Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 6714195 - 6714677
Alignment:
Q  1 cacaaggaagcaagatacaatacattgtaactagacacatcaggattgaccaaaatagattcatatactttactatcaacaccttcttcagcaacgattc 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||    
T  6714195 cacaaggaagcaagatacaatacattgtaactaggcacatcaggattgaccaaaatagattcatatactttgctatcaacaccttcttccgtaacgattc 6714294  T
Q  101 accttttgatagtaaattccacatccactttgccaacaaaactatgttaaaaaaccttacatctttcaacccaagaccaccagacctcttaggcttacac 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6714295 accttttgataataaattccacatccactttgccaacaaaactatgttaaaaagccttacatctttcaacccaagaccaccagacctcttaggcttacac 6714394  T
Q  201 acaccct-----------taacnnnnnnnnttcacacaataatatgcaatattcatagcgaatgagttaagctcacgtcgatagattgannnnnnnaac- 288  Q
    |||||||           | ||        |||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||       |||     
T  6714395 acacccttccagttcaccttacaaatttttttca-acaataatatgcaatatttatatcgaatgagctaagctcacgtcgatagattgatttttttaaca 6714493  T
Q  289 nnnnnnnnncaattacatgactatgaactgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttgg 388  Q
             ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6714494 aaaaaaaaacaattacatgactatgaactgagaaataattgacaaagacaaagaccattttgaattattaataaagtcagagaccaatttgagaatttgg 6714593  T
Q  389 tacaaagacaaagatcaatttgatggtttactcaataattgtgcttcaattgcacacatgacaactgacaaattaggcacctttg 473  Q
    ||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6714594 tacaaagacaatgatc-atttgatggtttactcaataattatgcttcaattgcacacatgacaactgacaaattaggcacctttg 6714677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 317 - 409
Target Start/End: Complemental strand, 10388322 - 10388230
Alignment:
Q  317 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaattt 409  Q
    ||||||| | || |||||||||||||||||||||| ||||||||| |||||||||||| ||| | ||||||||| ||||||||||||||||||    
T  10388322 tgagaaacatttaacaaagacagagaccattttgagttattaatagagtcagagaccagtttaaaaatttggtataaagacaaagatcaattt 10388230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 327 - 398
Target Start/End: Original strand, 30122818 - 30122889
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 398  Q
    ||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||| ||||||||||    
T  30122818 ttgacaaagacagagaccattttgagttattaataaagttagggaccaatttgagaatttgatacaaagaca 30122889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 316 - 421
Target Start/End: Complemental strand, 16434908 - 16434804
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 415  Q
    |||||||||  |||||||||||||| |||||||| | ||||||||| |||||  ||||||||||||||||||||||||||| | |||  |||||||||||    
T  16434908 ctgagaaatttttgacaaagacagataccatttttagttattaatagagtcat-gaccaatttgagaatttggtacaaagagagagactaatttgatggt 16434810  T
Q  416 ttactc 421  Q
    ||||||    
T  16434809 ttactc 16434804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 316 - 422
Target Start/End: Complemental strand, 67444 - 67338
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 415  Q
    |||||||||  |||| ||| |||| ||||||||| | ||||||||| |||||| |||||||||||||||||||||||||||||  || ||||||| || |    
T  67444 ctgagaaatgtttgataaaaacagggaccattttaagttattaatatagtcagggaccaatttgagaatttggtacaaagacatggaccaatttggtgat 67345  T
Q  416 ttactca 422  Q
    |||||||    
T  67344 ttactca 67338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 418
Target Start/End: Original strand, 67615 - 67705
Alignment:
Q  328 tgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggttta 418  Q
    |||||||||| ||||| ||||||| ||||||||||| |||||||||||||||| ||||||||||||||||   || |||||||||| ||||    
T  67615 tgacaaagacggagactattttgagttattaataaaatcagagaccaatttgaaaatttggtacaaagactgggaccaatttgatgattta 67705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 421
Target Start/End: Complemental strand, 30847718 - 30847624
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 421  Q
    |||||||||| || ||||||||| ||||||||||| | ||| |||||||||  ||||||||||| ||||||| ||| |||||| |||||||||||    
T  30847718 ttgacaaagatagggaccattttaaattattaatagaatcatagaccaattcaagaatttggtataaagacatagaccaatttaatggtttactc 30847624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 328 - 423
Target Start/End: Original strand, 10388496 - 10388591
Alignment:
Q  328 tgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaa 423  Q
    |||||||||||  || |||||||| ||||||||| ||| ||| |||||||||||||| ||||||||||||  ||| |||||| || ||||||||||    
T  10388496 tgacaaagacatggatcattttgatttattaatagagttagaaaccaatttgagaatatggtacaaagacggagaccaatttaatagtttactcaa 10388591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 417
Target Start/End: Complemental strand, 6169450 - 6169375
Alignment:
Q  342 accattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggttt 417  Q
    |||||||||| |||||||||||||||  |||||| |||||||||| ||| ||||| | ||| ||||||||||||||    
T  6169450 accattttgagttattaataaagtcattgaccaaattgagaatttagtataaagatagagaccaatttgatggttt 6169375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 335 - 418
Target Start/End: Complemental strand, 9530610 - 9530527
Alignment:
Q  335 gacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggttta 418  Q
    ||||||||| | |||||| |||||||||||| |||||| |||||||||||    |||||||||| ||| |||||| ||||||||    
T  9530610 gacagagactagtttgaaatattaataaagttagagactaatttgagaatgacttacaaagacagagaccaatttaatggttta 9530527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 378
Target Start/End: Original strand, 3687867 - 3687918
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaattt 378  Q
    |||||||| |||||||||||||||| ||| ||||||| |||| |||||||||    
T  3687867 ttgacaaaaacagagaccattttgagttactaataaactcagggaccaattt 3687918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 35072264 - 35072198
Alignment:
Q  332 aaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 398  Q
    ||||||| ||| | |||||| ||||||||| |||||| || ||| |||| |||||||||||||||||    
T  35072264 aaagacatagatcgttttgatttattaatagagtcagtgatcaaattgaaaatttggtacaaagaca 35072198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 425
Target Start/End: Original strand, 2182455 - 2182488
Alignment:
Q  392 aaagacaaagatcaatttgatggtttactcaata 425  Q
    ||||||| ||||||||||||||||||||||||||    
T  2182455 aaagacatagatcaatttgatggtttactcaata 2182488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 399
Target Start/End: Complemental strand, 2121963 - 2121883
Alignment:
Q  319 agaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaa 399  Q
    ||||||| || ||| | |||||||| ||||| | |||||||||||||||   | ||||||||||||| |||||||| ||||    
T  2121963 agaaatatttaacataaacagagactattttaagttattaataaagtcaatcatcaatttgagaattaggtacaaaaacaa 2121883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 418
Target Start/End: Complemental strand, 3687699 - 3687627
Alignment:
Q  346 ttttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggttta 418  Q
    |||||| ||||||| | |||||  || ||||||||||||||| |||||||||| ||| |||||| ||| ||||    
T  3687699 ttttgagttattaacagagtcatggatcaatttgagaatttgatacaaagacagagaccaatttaatgattta 3687627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 327 - 422
Target Start/End: Original strand, 26073418 - 26073513
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 422  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||| |||| |||||||||||||||||  || |||||||||||||||||||    
T  26073418 ttgacaaagacagagaccattttgaattattaatagagtcagggaccaaattgaaaatttggtacaaagacagtgaccaatttgatggtttactca 26073513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 327 - 422
Target Start/End: Original strand, 26097205 - 26097300
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 422  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||| |||| |||||||||||||||||  || |||||||||||||||||||    
T  26097205 ttgacaaagacagagaccattttgaattattaatagagtcagggaccaaattgaaaatttggtacaaagacagtgaccaatttgatggtttactca 26097300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 327 - 423
Target Start/End: Complemental strand, 32047327 - 32047231
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaa 423  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |  || ||||||| || |||||||||    
T  32047327 ttgacaaagacagagaccattttgagttattaatagagtcagagaccaatttgagaatttggtacaaagatagggaccaatttggtgatttactcaa 32047231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 327 - 422
Target Start/End: Complemental strand, 33189976 - 33189881
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 422  Q
    |||| ||||||| | |||||||||| ||||||||| ||||| ||||||||||||||| |||||||||||||| ||| || ||||||||||||||||    
T  33189976 ttgataaagacaaataccattttgagttattaatagagtcaaagaccaatttgagaagttggtacaaagacagagaccagtttgatggtttactca 33189881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 316 - 422
Target Start/End: Complemental strand, 35315947 - 35315841
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 415  Q
    |||||||| | |||||||||||| |||| ||||||| ||||||||| |||||| |||| | |||| |||||||||||||| || |||| |||||| ||||    
T  35315947 ctgagaaacatttgacaaagacatagactattttgagttattaatagagtcagggaccgaattgacaatttggtacaaaggcagagattaatttggtggt 35315848  T
Q  416 ttactca 422  Q
    |||||||    
T  35315847 ttactca 35315841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 327 - 417
Target Start/End: Original strand, 35316117 - 35316207
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggttt 417  Q
    |||| |||||||| ||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||| |||  |||||||| ||||    
T  35316117 ttgagaaagacagggaccattttgagttattaatagagtcagggaccaatttaagaatttggtacaaagacagagactaatttgatagttt 35316207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 426
Target Start/End: Complemental strand, 7511159 - 7511074
Alignment:
Q  341 gaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaataa 426  Q
    ||||||||||| ||||||| | |||||  ||||||||||||||||||||||||||| |  || |||||||||||||||||||||||    
T  7511159 gaccattttgagttattaacagagtcattgaccaatttgagaatttggtacaaagatagggaccaatttgatggtttactcaataa 7511074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 422
Target Start/End: Complemental strand, 21297799 - 21297712
Alignment:
Q  335 gacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 422  Q
    |||| |||| ||||||| ||||||||| |||||||||| || || |||||||||||||||||||  || |||||||||||||||||||    
T  21297799 gacaaagactattttgagttattaatagagtcagagactaaattaagaatttggtacaaagacagggaccaatttgatggtttactca 21297712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 422
Target Start/End: Complemental strand, 36642701 - 36642606
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 422  Q
    ||||||||||||||||  || |||| ||||||||| |||||| ||||||||||| ||||||||||||||| | ||| |||||| ||| ||||||||    
T  36642701 ttgacaaagacagagatgatgttgagttattaatagagtcagggaccaatttgaaaatttggtacaaagatagagaccaatttaatgatttactca 36642606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 422
Target Start/End: Original strand, 33190145 - 33190251
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 415  Q
    |||||||| | || |||||||||||||||||||||||||||||||| |||||| || ||| |||| |||||| || ||||||| | | ||||| ||| ||    
T  33190145 ctgagaaacatttaacaaagacagagaccattttgaattattaatagagtcagggatcaaattgaaaatttgatataaagacataaaccaattcgatagt 33190244  T
Q  416 ttactca 422  Q
    |||||||    
T  33190245 ttactca 33190251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 423
Target Start/End: Complemental strand, 26073237 - 26073141
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaa 423  Q
    |||||||||| || ||||||||||| ||||||||| ||| ||||  |||||||| |||||||||||||||||   | ||||||| ||||||||||||    
T  26073237 ttgacaaagaaagtgaccattttgagttattaatagagttagaggtcaatttgaaaatttggtacaaagacatgaaccaatttggtggtttactcaa 26073141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 423
Target Start/End: Complemental strand, 26097024 - 26096928
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaa 423  Q
    |||||||||| || ||||||||||| ||||||||| ||| ||||  |||||||| |||||||||||||||||   | ||||||| ||||||||||||    
T  26097024 ttgacaaagaaagtgaccattttgagttattaatagagttagaggtcaatttgaaaatttggtacaaagacatgaaccaatttggtggtttactcaa 26096928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 314 - 412
Target Start/End: Original strand, 5964230 - 5964328
Alignment:
Q  314 aactgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgat 412  Q
    ||||||||||   |||| |||||||| ||||||||||| ||||||| | |||| |||||||| |||||||||||||| ||||| |  ||||||||||||    
T  5964230 aactgagaaacgtttgataaagacagtgaccattttgagttattaaaagagtcggagaccaaattgagaatttggtataaagatatggatcaatttgat 5964328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 420
Target Start/End: Complemental strand, 3248391 - 3248298
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttact 420  Q
    |||||||||||||| || |||||||  |||||||||||||||| || |||||||||    | |||||||||||||| |||||| ||||||||||    
T  3248391 ttgacaaagacagaaactattttgagatattaataaagtcagatactaatttgagagcgggttacaaagacaaagaccaatttaatggtttact 3248298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 396
Target Start/End: Complemental strand, 25658481 - 25658412
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaaga 396  Q
    |||||||| |||  ||||||||||| ||||||| | |||||| |||||||||||||||||||||||||||    
T  25658481 ttgacaaaaacaatgaccattttgagttattaacagagtcagggaccaatttgagaatttggtacaaaga 25658412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 392
Target Start/End: Original strand, 32056867 - 32056932
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtaca 392  Q
    |||||||||||||| |||||||| | |||||||||||||| | |||||| ||||||||||||||||    
T  32056867 ttgacaaagacagaaaccattttaagttattaataaagtccgggaccaaattgagaatttggtaca 32056932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 329 - 409
Target Start/End: Original strand, 47334 - 47414
Alignment:
Q  329 gacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaattt 409  Q
    |||||||||||||| |||||||| ||||||||| || || |||||||||| | ||||||||||||||| | ||| ||||||    
T  47334 gacaaagacagagatcattttgagttattaatagagacaaagaccaatttaataatttggtacaaagatagagaccaattt 47414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 334 - 421
Target Start/End: Complemental strand, 5964077 - 5963990
Alignment:
Q  334 agacagagaccat-tttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 421  Q
    |||||| |||||| ||||| ||||||||| |||||||||| || ||||||||||||||||||||| || | |||| |||||||||||||    
T  5964077 agacagggaccatgtttgagttattaatagagtcagagactaaattgagaatttggtacaaagac-aacaccaatctgatggtttactc 5963990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 314 - 398
Target Start/End: Complemental strand, 32056732 - 32056649
Alignment:
Q  314 aactgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 398  Q
    |||||||||||  |||||||||||| |||||||||| | ||||||||| ||| || |||||| |||| |||||||||||||||||    
T  32056732 aactgagaaatgtttgacaaagacaaagaccattttaagttattaatagagt-agggaccaaattgaaaatttggtacaaagaca 32056649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 527523 - 527461
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaattt 378  Q
    |||||||| | ||||||||||||||||| || |||||||||||||| || |||||||||||||    
T  527523 ctgagaaacatttgacaaagacagagacaatcttgaattattaatatagacagagaccaattt 527461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 396
Target Start/End: Original strand, 40089031 - 40089111
Alignment:
Q  317 tgagaaataattgacaaagacagagaccattttgaattattaat-aaagtcagagaccaatttgagaatttggtacaaaga 396  Q
    ||||||| | |||||||||||||| || |||||||||||||||| ||||||||    |||||| | |||||||||||||||    
T  40089031 tgagaaacatttgacaaagacagaaactattttgaattattaataaaagtcaggattcaatttaaaaatttggtacaaaga 40089111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 3248436 - 3248497
Alignment:
Q  317 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaattt 378  Q
    ||||||||  ||||||||||||||||| |||||||  |||||||| ||||| |||| |||||    
T  3248436 tgagaaatgtttgacaaagacagagactattttgacatattaatatagtcaaagactaattt 3248497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 423
Target Start/End: Complemental strand, 42709988 - 42709892
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaa 423  Q
    ||||||||||||  ||| ||||| || |||||||| |||| |||||  ||||||||||    ||||||||||  || ||||||||| ||||||||||    
T  42709988 ttgacaaagacattgactattttaaaatattaatagagtcggagactgatttgagaatcacttacaaagacagggaccaatttgatagtttactcaa 42709892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 327 - 422
Target Start/End: Original strand, 5074526 - 5074621
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 422  Q
    ||||||||||||| ||||||||||| ||||||||| || ||| ||||||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  5074526 ttgacaaagacagggaccattttgagttattaatagagacagggaccaatttgagaatttggtacaaagatatggatcaatttgatggtttactca 5074621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 316 - 394
Target Start/End: Original strand, 23488849 - 23488927
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaa 394  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| ||||    
T  23488849 ctgagaaatatttgacaaagacagagaccattttgaattattcatagagtcagggaccaatttgagaatttggttcaaa 23488927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 317 - 422
Target Start/End: Original strand, 23488960 - 23489065
Alignment:
Q  317 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtt 416  Q
    ||||||| | ||||||||||||  ||||||||||| ||||| ||| |||||  |||||||||||||||||||||||||||||| |||||||||| || ||    
T  23488960 tgagaaacatttgacaaagacaatgaccattttgagttattcatagagtcatggaccaatttgagaatttggtacaaagacaaggatcaatttggtgatt 23489059  T
Q  417 tactca 422  Q
    ||||||    
T  23489060 tactca 23489065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 330 - 421
Target Start/End: Complemental strand, 11732684 - 11732593
Alignment:
Q  330 acaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 421  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||| |||| |||||||||||||||||   |  |||||||||||||||||    
T  11732684 acaatgacagagaccattttgaattattaatagagtcagtgaccaaattgaaaatttggtacaaagacatgtactaatttgatggtttactc 11732593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 317 - 423
Target Start/End: Complemental strand, 16997197 - 16997091
Alignment:
Q  317 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtt 416  Q
    ||||||| | |||||||||||| |||||||||||| ||||||||| ||| ||  ||||| |||| ||||||||||||||| |  || |||||||||||||    
T  16997197 tgagaaacatttgacaaagacaaagaccattttgagttattaatagagttaggaaccaaattgataatttggtacaaagatagggaccaatttgatggtt 16997098  T
Q  417 tactcaa 423  Q
    |||||||    
T  16997097 tactcaa 16997091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 422
Target Start/End: Original strand, 34153485 - 34153579
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 422  Q
    |||||||||||| | | |||||||| ||||||||| ||||| |||||||||||| ||||||||||||| |||  |||||||||| |||||||||||    
T  34153485 ttgacaaagacata-atcattttgagttattaatagagtcatagaccaatttgataatttggtacaaaaacagtgatcaatttggtggtttactca 34153579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 421
Target Start/End: Complemental strand, 7905727 - 7905633
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 421  Q
    |||| ||||||||||| |||||||| ||||||||| |||||| ||| ||||||| |||||||||||||||||   |  |||||||||||||||||    
T  7905727 ttgataaagacagagatcattttgagttattaatagagtcagggactaatttgaaaatttggtacaaagacaggaagtaatttgatggtttactc 7905633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 327 - 396
Target Start/End: Original strand, 41480781 - 41480850
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaaga 396  Q
    |||||||||||||  |||||||||| |||||||||||||||| || |||| |||||||||||||||||||    
T  41480781 ttgacaaagacagtaaccattttgagttattaataaagtcagggaacaatatgagaatttggtacaaaga 41480850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 421
Target Start/End: Original strand, 42950606 - 42950710
Alignment:
Q  317 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtt 416  Q
    ||||||||  ||||||||||||  ||||||||||| ||||||||| ||||||||||| |||| | |||||  |||||||||| |||  ||| ||||||||    
T  42950606 tgagaaatgtttgacaaagacaatgaccattttgagttattaatagagtcagagacctatttaaaaatttaatacaaagacatagactaatctgatggtt 42950705  T
Q  417 tactc 421  Q
    |||||    
T  42950706 tactc 42950710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 398
Target Start/End: Complemental strand, 38225537 - 38225455
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 398  Q
    |||| ||||| |||||||| ||  |||||||||||| ||||||||| ||| || |||||| ||||||||||||||||||||||    
T  38225537 ctgaaaaatatttgacaaataccaagaccattttgagttattaatagagtaagggaccaaattgagaatttggtacaaagaca 38225455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 421
Target Start/End: Complemental strand, 42950446 - 42950341
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 415  Q
    |||||||| | ||||||| | || ||| |||||||| ||||||||||||| || || ||| |||| |||||| |||||||||||  | ||||||||||||    
T  42950446 ctgagaaacatttgacaacggcatagatcattttgagttattaataaagttagggatcaaattgaaaatttgatacaaagacaagaaccaatttgatggt 42950347  T
Q  416 ttactc 421  Q
    ||||||    
T  42950346 ttactc 42950341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 410
Target Start/End: Complemental strand, 42027037 - 42026954
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttg 410  Q
    |||||||||||  | | |||||||| |||||||||||||| | ||||||||| | ||||||||| |||||||| ||||||||||    
T  42027037 ttgacaaagacgaaaaacattttgagttattaataaagtcggggaccaatttaaaaatttggtaaaaagacaatgatcaatttg 42026954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 38225707 - 38225777
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagac 397  Q
    ||||||||||||   |||||||| ||||||||||| |||||| ||||||||||| ||||||||| ||||||    
T  38225707 ttgacaaagacatgaaccattttaaattattaatagagtcagggaccaatttgataatttggtataaagac 38225777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 317 - 399
Target Start/End: Original strand, 42027208 - 42027290
Alignment:
Q  317 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaa 399  Q
    ||||||| | ||||||||||||   |||||||| | ||||||||| |||||||||||||||| ||||||| ||| ||||||||    
T  42027208 tgagaaagatttgacaaagacaagaaccattttaagttattaatagagtcagagaccaatttaagaattttgtataaagacaa 42027290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 13577791 - 13577840
Alignment:
Q  329 gacaaagacagagaccattttgaattattaataaagtcagagaccaattt 378  Q
    |||||||| || ||||||||||||||||||| ||||||||  ||||||||    
T  13577791 gacaaagatagtgaccattttgaattattaacaaagtcagtaaccaattt 13577840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 409
Target Start/End: Complemental strand, 5074355 - 5074264
Alignment:
Q  317 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaattt 409  Q
    ||||||| | ||||||||||||||||  ||||||| ||||| ||| ||| || ||||||||| | |||||| ||||||||   ||||||||||    
T  5074355 tgagaaacatttgacaaagacagagattattttgagttattcatagagttag-gaccaatttaaaaatttgatacaaagatggagatcaattt 5074264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 327 - 421
Target Start/End: Complemental strand, 4872640 - 4872546
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 421  Q
    |||||||||||||||| |||||||| ||||||||| ||| ||||| |||||| |||||||||||||||||||||||||| |||| ||||||||||    
T  4872640 ttgacaaagacagagatcattttgagttattaatagagttagagatcaatttaagaatttggtacaaagacaaagatcagtttggtggtttactc 4872546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 317 - 422
Target Start/End: Original strand, 51103629 - 51103734
Alignment:
Q  317 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtt 416  Q
    ||||||||  |||| |||||||||||| ||||||| ||||||||| |||||| ||||||||||| ||||||||||||||| |  || |||||||||||||    
T  51103629 tgagaaatgtttgataaagacagagactattttgagttattaatagagtcagtgaccaatttgaaaatttggtacaaagatagggaccaatttgatggtt 51103728  T
Q  417 tactca 422  Q
    ||||||    
T  51103729 tactca 51103734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 421
Target Start/End: Complemental strand, 4892479 - 4892385
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 421  Q
    |||||||||||||  |||||||||| ||||||||| |||| ||||| ||||| ||||||||||||||||||| ||| ||||||| ||||||||||    
T  4892479 ttgacaaagacagtaaccattttgagttattaatagagtcggagactaatttaagaatttggtacaaagacagagaccaatttggtggtttactc 4892385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 409
Target Start/End: Complemental strand, 51103458 - 51103376
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaattt 409  Q
    ||||||||| ||  ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  51103458 ttgacaaaggcaatgaccattttgaattattaatagagtcagggaccaatttgagaatttggtacaaagacagagaccaattt 51103376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 316 - 424
Target Start/End: Original strand, 4892647 - 4892755
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 415  Q
    |||||||| | || ||||||||| ||||||||||||||| | |||| |||| | |||||| |||||||||||||||||||| | | |  |||||||||||    
T  4892647 ctgagaaacatttcacaaagacaaagaccattttgaattgtaaatagagtctgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggt 4892746  T
Q  416 ttactcaat 424  Q
    |||||||||    
T  4892747 ttactcaat 4892755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 422
Target Start/End: Complemental strand, 39864184 - 39864089
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 422  Q
    ||||||||||||| || |||||||| ||||||||| |||| | ||||||||| | ||||||||||||||||| ||| |||||| ||| ||||||||    
T  39864184 ttgacaaagacagggatcattttgagttattaatagagtcggggaccaatttaaaaatttggtacaaagacagagaccaatttaatgatttactca 39864089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 316 - 421
Target Start/End: Original strand, 35251649 - 35251754
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 415  Q
    |||||||| | |||| ||||||| |||||||| | | ||||||||| ||| || |||||| ||||||||||||||||||||||  || ||||||| ||||    
T  35251649 ctgagaaacatttgagaaagacaaagaccattataagttattaatagagttagggaccaaattgagaatttggtacaaagacagggaccaatttggtggt 35251748  T
Q  416 ttactc 421  Q
    ||||||    
T  35251749 ttactc 35251754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 427
Target Start/End: Original strand, 22886695 - 22886795
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaataa 426  Q
    |||||||||| ||| || ||||||||||||||||| ||||| |||||||||| | |||||| |||||||| ||| | ||||| | || ||||||||||||    
T  22886695 ttgacaaagatagaaactattttgaattattaatagagtcaaagaccaatttaaaaatttgatacaaagataaataccaattcggtgatttactcaataa 22886794  T
Q  427 t 427  Q
    |    
T  22886795 t 22886795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 427
Target Start/End: Original strand, 22938359 - 22938459
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaataa 426  Q
    |||||||||| ||| || ||||||||||||||||| ||||| |||||||||| | |||||| |||||||| ||| | ||||| | || ||||||||||||    
T  22938359 ttgacaaagatagaaactattttgaattattaatagagtcaaagaccaatttaaaaatttgatacaaagataaataccaattcggtgatttactcaataa 22938458  T
Q  427 t 427  Q
    |    
T  22938459 t 22938459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 398
Target Start/End: Complemental strand, 35004554 - 35004495
Alignment:
Q  339 gagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 398  Q
    ||||| ||||||| ||||||||| |||||| ||||||| |||||||||||||||||||||    
T  35004554 gagactattttgagttattaatagagtcagggaccaatatgagaatttggtacaaagaca 35004495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 428
Target Start/End: Complemental strand, 22886525 - 22886410
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttga---attattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgat 412  Q
    |||||||| | ||||||||||||   || |||||||   |||||||||||||||||  |||||||| ||||||||||||||| |||   | |||||||||    
T  22886525 ctgagaaacatttgacaaagacaagtactattttgagttattattaataaagtcaggaaccaatttaagaatttggtacaaatacatgaaccaatttgat 22886426  T
Q  413 ggtttactcaataatt 428  Q
    | ||||||||| ||||    
T  22886425 gatttactcaaaaatt 22886410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 428
Target Start/End: Complemental strand, 22938189 - 22938074
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttga---attattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgat 412  Q
    |||||||| | ||||||||||||   || |||||||   |||||||||||||||||  |||||||| ||||||||||||||| |||   | |||||||||    
T  22938189 ctgagaaacatttgacaaagacaagtactattttgagttattattaataaagtcaggaaccaatttaagaatttggtacaaatacatgaaccaatttgat 22938090  T
Q  413 ggtttactcaataatt 428  Q
    | ||||||||| ||||    
T  22938089 gatttactcaaaaatt 22938074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 420
Target Start/End: Original strand, 36825072 - 36825165
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttact 420  Q
    |||| ||||| | ||| |||||||| ||||||||| |||||  |||||| | || ||||||||||||| ||||| | |||||||||||||||||    
T  36825072 ttgataaagatatagatcattttgagttattaatagagtcaatgaccaaatagaaaatttggtacaaatacaaataccaatttgatggtttact 36825165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 384
Target Start/End: Complemental strand, 44137460 - 44137403
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaat 384  Q
    |||||||||||||| || |||||||| |||||||| |||||||||| |||||||||||    
T  44137460 ttgacaaagacagatactattttgaaatattaatagagtcagagactaatttgagaat 44137403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 368
Target Start/End: Original strand, 45302598 - 45302639
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcag 368  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  45302598 ttgacaaagacagaaaccattttgaattattaataaagtcag 45302639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 43049385 - 43049437
Alignment:
Q  342 accattttgaattattaataaagtcagagaccaatttgagaatttggtacaaa 394  Q
    |||||||||||||||||||| | ||||||| |||||| |||||||||||||||    
T  43049385 accattttgaattattaatagactcagagatcaatttaagaatttggtacaaa 43049437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 421
Target Start/End: Complemental strand, 45302427 - 45302323
Alignment:
Q  317 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtt 416  Q
    ||||||| | || |||||||||| ||  |||||||||||||| || |||||| || ||| || |||||||| || ||||| |  ||||||||||||||||    
T  45302427 tgagaaacatttcacaaagacagtgaatattttgaattattagtagagtcagggatcaaattaagaatttgatataaagagagggatcaatttgatggtt 45302328  T
Q  417 tactc 421  Q
    |||||    
T  45302327 tactc 45302323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 40681720 - 40681777
Alignment:
Q  341 gaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 398  Q
    ||||||||| | ||||||||| | |||| |||||||||||||||| ||||||||||||    
T  40681720 gaccattttaagttattaatagaatcagggaccaatttgagaattcggtacaaagaca 40681777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 402
Target Start/End: Original strand, 33614396 - 33614467
Alignment:
Q  331 caaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaaga 402  Q
    ||||||||||||| | |||||| ||||||||||||||  ||| ||||||||| | |  ||||||||||||||    
T  33614396 caaagacagagactagtttgaaatattaataaagtcatggactaatttgagagtctcctacaaagacaaaga 33614467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 390
Target Start/End: Complemental strand, 42077099 - 42077056
Alignment:
Q  347 tttgaattattaataaagtcagagaccaatttgagaatttggta 390  Q
    ||||| |||||||||||||||  |||||||||||||||||||||    
T  42077099 tttgagttattaataaagtcaaggaccaatttgagaatttggta 42077056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 394
Target Start/End: Original strand, 54511587 - 54511654
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaa 394  Q
    ||||| |||| | |||||||||||||||||||||| | ||   ||||||||| |||||||||||||||    
T  54511587 ttgactaagatatagaccattttgaattattaatagattcgtggaccaatttaagaatttggtacaaa 54511654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 396
Target Start/End: Original strand, 5808241 - 5808271
Alignment:
Q  366 cagagaccaatttgagaatttggtacaaaga 396  Q
    |||||||||||||||||||||||||||||||    
T  5808241 cagagaccaatttgagaatttggtacaaaga 5808271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 398
Target Start/End: Complemental strand, 30808460 - 30808387
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaata--aagtcagagaccaatttgagaatttggtacaaagaca 398  Q
    |||||||||||   || ||||||||||||||||||  |||| ||||| |||||| | |||||||||||||||||    
T  30808460 ttgacaaagacgtggaacattttgaattattaatataaagttagagatcaatttaaaaatttggtacaaagaca 30808387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 424
Target Start/End: Original strand, 4872824 - 4872916
Alignment:
Q  332 aaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaat 424  Q
    ||||||||||| |||||| | ||||||||| || || | | ||| || |||||||||||||||||||   |  |||||||||||||| |||||    
T  4872824 aaagacagagatcattttaagttattaatagaggcaaaaatcaaatttagaatttggtacaaagacaggtacaaatttgatggtttattcaat 4872916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 316 - 422
Target Start/End: Original strand, 33140540 - 33140646
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 415  Q
    |||||||||  ||||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||| || ||||||  || |    
T  33140540 ctgagaaatgtttgacaaagacagtgaccattttgagttattaatagagtcagagatcaatttgagcatttggtacaaagacaaggaccaatttagtgat 33140639  T
Q  416 ttactca 422  Q
    |||||||    
T  33140640 ttactca 33140646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 316 - 421
Target Start/End: Original strand, 43804151 - 43804256
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 415  Q
    |||||||| | ||||||||||||  ||||||||||||||||||||||||| |  ||||||||| | |||||||| |||||||||||| |||||||||| |    
T  43804151 ctgagaaacatttgacaaagacaatgaccattttgaattattaataaagttaaggaccaatttaaaaatttggtgcaaagacaaagaccaatttgatgat 43804250  T
Q  416 ttactc 421  Q
    ||||||    
T  43804251 ttactc 43804256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 327 - 422
Target Start/End: Original strand, 46164093 - 46164188
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 422  Q
    ||||||||||||||||||||||||| ||||||||| |||||| ||| |||||||||||||| ||||||||||  |  ||||||| |||||||||||    
T  46164093 ttgacaaagacagagaccattttgagttattaatagagtcagggactaatttgagaatttgatacaaagacagggtccaatttggtggtttactca 46164188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 316 - 421
Target Start/End: Complemental strand, 46163924 - 46163819
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 415  Q
    |||||||| | ||||||||||||| ||||||||||| ||||||||| ||||   |||||| ||||||||||||||||||||||  || ||| ||||||||    
T  46163924 ctgagaaacatttgacaaagacagggaccattttgagttattaatagagtcgcggaccaaattgagaatttggtacaaagacagggaccaacttgatggt 46163825  T
Q  416 ttactc 421  Q
    ||||||    
T  46163824 ttactc 46163819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 327 - 422
Target Start/End: Original strand, 36012688 - 36012783
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 422  Q
    |||| |||||||| ||||||||||| ||||||||| ||||||||| |||||||| ||||||||||||||||| ||| ||||||  || ||||||||    
T  36012688 ttgaaaaagacagggaccattttgagttattaatagagtcagagatcaatttgataatttggtacaaagacagagaccaatttagtgatttactca 36012783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 422
Target Start/End: Complemental strand, 32808252 - 32808147
Alignment:
Q  317 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtt 416  Q
    ||||||| | |||||||||||||||| |||||||| ||||||||| |||||| ||||||||||| ||||||  |||||    |||| |||||||||||||    
T  32808252 tgagaaacatttgacaaagacagagatcattttgagttattaatagagtcagggaccaatttgaaaatttgacacaaaagagaagaccaatttgatggtt 32808153  T
Q  417 tactca 422  Q
    ||||||    
T  32808152 tactca 32808147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 342 - 421
Target Start/End: Complemental strand, 12089068 - 12088989
Alignment:
Q  342 accattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 421  Q
    ||||||||||||||||||||||||||| ||||||||| | ||||||||||||| ||| ||| |||||| ||| |||||||    
T  12089068 accattttgaattattaataaagtcagggaccaatttaaaaatttggtacaaaaacatagaccaatttaatgatttactc 12088989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 426
Target Start/End: Complemental strand, 55214059 - 55213961
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaataa 426  Q
    |||||||||||   ||||||||||| ||||||||| | ||||| |||||||||| ||||||||||||||||| |||  |||||||| |||||||||||||    
T  55214059 ttgacaaagaccttgaccattttgagttattaatagattcagataccaatttgaaaatttggtacaaagacagagactaatttgat-gtttactcaataa 55213961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 398
Target Start/End: Complemental strand, 26244963 - 26244881
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 398  Q
    |||| ||||| ||||||||||||||||||||||||  ||||||||| |||||  ||||||||| | |||||||||||||||||    
T  26244963 ctgataaatatttgacaaagacagagaccattttgttttattaatagagtcatggaccaatttaaaaatttggtacaaagaca 26244881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 327 - 398
Target Start/End: Complemental strand, 26122045 - 26121974
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 398  Q
    |||||||||||||| |||||||||  ||||||||| |||||  ||||||||||||||||||||| |||||||    
T  26122045 ttgacaaagacagataccattttgtgttattaatagagtcatggaccaatttgagaatttggtataaagaca 26121974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 327 - 407
Target Start/End: Original strand, 7565752 - 7565832
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaat 407  Q
    |||||||||| |  ||||||||||| ||||||||||||||  ||||||| |||||||||||||||| ||| ||||| ||||    
T  7565752 ttgacaaagagatggaccattttgagttattaataaagtcgtagaccaaattgagaatttggtacagagataaagaccaat 7565832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 327 - 421
Target Start/End: Original strand, 45708715 - 45708809
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 421  Q
    ||||||||||||||| ||||||||| ||||||| | |||||| ||||||||| | | ||| |||||||||||  || |||||| ||| |||||||    
T  45708715 ttgacaaagacagaggccattttgagttattaacatagtcagtgaccaatttaaaattttagtacaaagacatggaccaatttaatgatttactc 45708809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 421
Target Start/End: Original strand, 32808427 - 32808523
Alignment:
Q  327 ttgacaaagacagagaccattttgaattat--taataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 421  Q
    |||||||||| |||||||||||||| ||||  ||||| || ||  ||||||||||| | ||||||||||||||| ||| ||||||| || |||||||    
T  32808427 ttgacaaagatagagaccattttgagttatcataatagagccaaggaccaatttgaaattttggtacaaagacagagaccaatttggtgatttactc 32808523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 327 - 398
Target Start/End: Complemental strand, 33140370 - 33140299
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 398  Q
    |||||||||||| | | |||||||| ||||||||| ||||||| || ||||| |||||||| ||||||||||    
T  33140370 ttgacaaagacaaaaatcattttgagttattaatagagtcagaaactaatttaagaatttgatacaaagaca 33140299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 327 - 422
Target Start/End: Complemental strand, 39840730 - 39840635
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 422  Q
    |||||||| |||  ||| |||||||| |||||||| |||||||||| |||||||||||    ||||||||||  ||||||||||||  ||||||||    
T  39840730 ttgacaaaaacaatgactattttgaaatattaatagagtcagagactaatttgagaatcacttacaaagacagggatcaatttgataatttactca 39840635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 398
Target Start/End: Complemental strand, 26244266 - 26244184
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 398  Q
    |||||||| | | ||||||||||||||||||||||  ||||||||| |||||  || |||||| | |||||| ||||||||||    
T  26244266 ctgagaaacattggacaaagacagagaccattttgtgttattaatagagtcatggatcaatttaaaaatttgttacaaagaca 26244184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 384
Target Start/End: Complemental strand, 2051561 - 2051504
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaat 384  Q
    |||||||||| |  ||||||||||| ||||||| | ||||||||||||||||||||||    
T  2051561 ttgacaaagataaggaccattttgagttattaacagagtcagagaccaatttgagaat 2051504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 423
Target Start/End: Original strand, 55447190 - 55447286
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaa 423  Q
    |||| |||||||||||| ||||| || |||||| | ||||||||||  ||||||||||    |||||||||||||| ||||||  ||||||| ||||    
T  55447190 ttgagaaagacagagactattttaaaatattaagagagtcagagactgatttgagaatcacttacaaagacaaagaccaatttagtggtttaatcaa 55447286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 426
Target Start/End: Original strand, 2051741 - 2051840
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaataa 426  Q
    |||| ||| |||| ||| ||||||| |||||||||||||||  ||||||||| | |||||| |||||| ||  ||| ||||||  || ||||||||||||    
T  2051741 ttgataaaaacagggactattttgagttattaataaagtcatggaccaatttaaaaatttgatacaaaaacggagaccaatttagtgatttactcaataa 2051840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 414
Target Start/End: Complemental strand, 3157766 - 3157668
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatgg 414  Q
    |||||||| | |||||||||| |   |||||||| ||||||||||| ||| |  ||| ||  |||||||||||||||||||||| || ||| |||||||    
T  3157766 ctgagaaacatttgacaaagaaaagaaccattttaaattattaatagagttatggacgaaactgagaatttggtacaaagacaaggaccaacttgatgg 3157668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 396
Target Start/End: Original strand, 3157934 - 3158004
Alignment:
Q  327 ttgacaaagacagagaccattttgaa-ttattaataaagtcagagaccaatttgagaatttggtacaaaga 396  Q
    ||||||||||||||||||||||| || ||||||||| | |||  ||  |||||||||||||| ||||||||    
T  3157934 ttgacaaagacagagaccattttaaatttattaatagaatcatggattaatttgagaatttgatacaaaga 3158004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 399
Target Start/End: Original strand, 12015052 - 12015122
Alignment:
Q  329 gacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaa 399  Q
    |||||| | |||||| ||||||| ||||||||| |||  | || ||| |||||||||||||||||||||||    
T  12015052 gacaaaaatagagactattttgagttattaatagagttggggatcaaattgagaatttggtacaaagacaa 12015122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 392
Target Start/End: Complemental strand, 7565684 - 7565620
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtaca 392  Q
    |||||||||| ||| | |||||||| ||||||||| |||| | |||||||||||||||||| ||||    
T  7565684 ttgacaaagatagatatcattttgagttattaatagagtcgg-gaccaatttgagaatttgataca 7565620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 423
Target Start/End: Original strand, 39840903 - 39840996
Alignment:
Q  330 acaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaa 423  Q
    ||||||| || ||| |||||||| |||||||||||| ||  || |||||||||||    |||||||| | ||||||| ||| ||||||||||||    
T  39840903 acaaagatagggactattttgaaatattaataaagttaggaactaatttgagaatcacttacaaagatatagatcaaattggtggtttactcaa 39840996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 395
Target Start/End: Original strand, 43031396 - 43031464
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaag 395  Q
    ||||||||||||  || |||||| | ||||||||| | ||||| |||||||| |||||||| |||||||    
T  43031396 ttgacaaagacaatgatcattttaagttattaatagaatcagaaaccaatttaagaatttgatacaaag 43031464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 321 - 424
Target Start/End: Original strand, 26407670 - 26407773
Alignment:
Q  321 aaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttact 420  Q
    |||| |||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||| |||||||||||||||||  ||  || |||||| ||||||    
T  26407670 aaatgattgacaaagacagggaccattttgaattattaatagagtcagggaccaatatgaaaatttggtacaaagacagggactaaattgatgatttact 26407769  T
Q  421 caat 424  Q
    ||||    
T  26407770 caat 26407773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 317 - 420
Target Start/End: Original strand, 36937767 - 36937870
Alignment:
Q  317 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtt 416  Q
    ||||||| | || |||||||||||||||||||| | ||||||||| |||||  |||||| |||||||||||||||||||||||  | |||||||||||||    
T  36937767 tgagaaacatttcacaaagacagagaccattttcagttattaatagagtcaaggaccaaattgagaatttggtacaaagacaagaaccaatttgatggtt 36937866  T
Q  417 tact 420  Q
    ||||    
T  36937867 tact 36937870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 316 - 409
Target Start/End: Complemental strand, 29469620 - 29469527
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaattt 409  Q
    |||||||| | ||||||||||||| ||||||||||| ||||||||| |||||  |||||||||||||||||||||||||| || ||| ||||||    
T  29469620 ctgagaaacatttgacaaagacagcgaccattttgagttattaatagagtcaatgaccaatttgagaatttggtacaaaggcagagaccaattt 29469527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 30786444 - 30786520
Alignment:
Q  345 attttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 421  Q
    ||||||| ||||||||| |||||| || |||||||| | ||||||||||||||||||||||||||||||||||||||    
T  30786444 attttgagttattaatagagtcagggatcaatttgaaagtttggtacaaagacaaagatcaatttgatggtttactc 30786520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 327 - 423
Target Start/End: Complemental strand, 36937596 - 36937502
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaa 423  Q
    |||||||||||| ||||||||  || ||||||||| |||||||||||||||||||||||||||||||||| |  ||  |||||| ||||||||||||    
T  36937596 ttgacaaagacaaagaccatt--gagttattaatagagtcagagaccaatttgagaatttggtacaaagatagggactaatttggtggtttactcaa 36937502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 398
Target Start/End: Complemental strand, 26407495 - 26407424
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 398  Q
    ||||||||||||| ||||||||||| ||||||||| |||| || |||||||||| |||||||||||||||||    
T  26407495 ttgacaaagacagggaccattttgagttattaatagagtctgaaaccaatttgaaaatttggtacaaagaca 26407424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 342 - 421
Target Start/End: Original strand, 18143998 - 18144080
Alignment:
Q  342 accattttgaattattaataaagtcagagaccaatttgagaatt---tggtacaaagacaaagatcaatttgatggtttactc 421  Q
    |||||||||| ||||||||| |||||||||||||||| | ||||   ||||| |||||||||||  |||||||||||||||||    
T  18143998 accattttgagttattaatagagtcagagaccaatttaaaaatttggtggtaaaaagacaaagactaatttgatggtttactc 18144080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 396
Target Start/End: Original strand, 29166979 - 29167048
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaaga 396  Q
    |||||||| |||||||||||||||| |||| |||| |||| |  || ||||||| |||||| ||||||||    
T  29166979 ttgacaaaaacagagaccattttgagttatcaatagagtccggtactaatttgaaaatttgttacaaaga 29167048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 384
Target Start/End: Original strand, 32013986 - 32014043
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaat 384  Q
    ||||||||||||| ||| |||||||| ||| |||| ||||| |||| |||||||||||    
T  32013986 ttgacaaagacagtgactattttgaaatatcaatagagtcatagactaatttgagaat 32014043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 428
Target Start/End: Original strand, 22191527 - 22191623
Alignment:
Q  332 aaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaataatt 428  Q
    ||||||| |||| ||||| || |||||||| |||||| ||| ||||||||| |    ||||||| ||| |||||| ||| |||||||||||| ||||    
T  22191527 aaagacatagactattttaaaatattaatagagtcagggactaatttgagagtgacttacaaaggcaaggatcaaattggtggtttactcaagaatt 22191623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 421
Target Start/End: Complemental strand, 29166738 - 29166682
Alignment:
Q  365 tcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 421  Q
    |||| |||||| || |||||| | |||||||||| ||| ||||||||||||||||||    
T  29166738 tcagggaccaaattaagaattcgatacaaagacagagaccaatttgatggtttactc 29166682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 317 - 396
Target Start/End: Complemental strand, 22843846 - 22843767
Alignment:
Q  317 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaaga 396  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| | | || |||||| |||| |||||||||||||||    
T  22843846 tgagaaatatttgacaaagacagagaccattttgaattattaatagaatgagggaccaaattgaaaatttggtacaaaga 22843767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 327 - 421
Target Start/End: Complemental strand, 17990837 - 17990743
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 421  Q
    |||||||| ||| |||||||||||| ||||||||| |||||| |||||| ||||||||||| ||| ||||||| || ||||||| ||||||||||    
T  17990837 ttgacaaaaacaaagaccattttgagttattaatagagtcagggaccaaattgagaatttgatacgaagacaatgaccaatttggtggtttactc 17990743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 341 - 421
Target Start/End: Original strand, 8999818 - 8999898
Alignment:
Q  341 gaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 421  Q
    ||||||||||||| ||||||  ||||| ||||||| ||||||||||| |||||||||||  ||||||||||||||||||||    
T  8999818 gaccattttgaatcattaatggagtcacagaccaaattgagaatttgatacaaagacaataatcaatttgatggtttactc 8999898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 421
Target Start/End: Original strand, 36151006 - 36151100
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 421  Q
    ||||||||||||||||||||||||| ||||| ||| ||| ||  |||||||||||||||||||||||| |||| || |||| || || |||||||    
T  36151006 ttgacaaagacagagaccattttgagttattcatagagttaggaaccaatttgagaatttggtacaaatacaaggaccaatatggtgatttactc 36151100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 420
Target Start/End: Original strand, 13932834 - 13932927
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtc-agagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttact 420  Q
    ||||||||||||  ||||||||||| ||||||||| |||| ||| | |||||||||||||| ||||||| | |  || |||||||||||||||||    
T  13932834 ttgacaaagacattgaccattttgagttattaatagagtcgaga-atcaatttgagaatttagtacaaaaatagggaccaatttgatggtttact 13932927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 422
Target Start/End: Original strand, 11275823 - 11275891
Alignment:
Q  354 tattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 422  Q
    ||||||||||||||||||| |||||||||||    ||||||||||  || |||||| ||||||||||||    
T  11275823 tattaataaagtcagagactaatttgagaatgatttacaaagacatggaacaatttaatggtttactca 11275891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 393
Target Start/End: Original strand, 22843904 - 22843969
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaa 393  Q
    ||||||||||||  ||||||||| | ||||||||| |||| || ||| |||||||||||||||||||    
T  22843904 ttgacaaagacatggaccattttaagttattaatagagtc-gaaaccgatttgagaatttggtacaa 22843969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 424
Target Start/End: Original strand, 8840028 - 8840125
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaat 424  Q
    ||||||||||||| ||| |||||||| |||||||| |||| | ||| ||| |||||||    |||||| |||  || ||| |||||||||||||||||    
T  8840028 ttgacaaagacagggactattttgaaatattaatagagtcggggactaatctgagaatcccttacaaatacagggaccaaattgatggtttactcaat 8840125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 327 - 422
Target Start/End: Original strand, 7481196 - 7481291
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 422  Q
    |||||||||| |||||||||||| | ||||||||| ||||  |||||| |||||||||||| |||||| ||| ||| |||||||||||||||||||    
T  7481196 ttgacaaagatagagaccattttaagttattaatagagtcgaagaccagtttgagaatttgttacaaatacagagaccaatttgatggtttactca 7481291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 327 - 398
Target Start/End: Complemental strand, 27133913 - 27133842
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 398  Q
    |||||||||||| |||||||||||| |||||||||||||||| || |||||| |||||||||||||||||||    
T  27133913 ttgacaaagacatagaccattttgagttattaataaagtcagggatcaatttaagaatttggtacaaagaca 27133842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 421
Target Start/End: Complemental strand, 23329390 - 23329296
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 421  Q
    |||||||| ||||||||||||| ||  |||||||| ||||||  ||||| ||||||||||| |||||||| ||  | ||||||||||||||||||    
T  23329390 ttgacaaacacagagaccatttcgaggtattaatagagtcaggaaccaaattgagaatttgatacaaagataagaaccaatttgatggtttactc 23329296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 380
Target Start/End: Complemental strand, 4066976 - 4066923
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttga 380  Q
    ||||||||||||| ||||||||||||||||||||| |||||| |||||||||||    
T  4066976 ttgacaaagacagtgaccattttgaattattaatagagtcagggaccaatttga 4066923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 38208522 - 38208583
Alignment:
Q  357 taataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggttta 418  Q
    ||||| |||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||    
T  38208522 taatagagtcagggaccaatttgagaatttggtacaaagacagagaccaatttggtggttta 38208583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 316 - 424
Target Start/End: Original strand, 4067143 - 4067249
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggt 415  Q
    |||||||| | ||||||||||| | ||||||||||| ||||||||| |||||  ||||||||| | |||||||||||||||    ||||||||||||| |    
T  4067143 ctgagaaacatttgacaaagac-gtgaccattttgagttattaatagagtcaatgaccaatttaaaaatttggtacaaaga-ggggatcaatttgatgat 4067240  T
Q  416 ttactcaat 424  Q
    |||||||||    
T  4067241 ttactcaat 4067249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 49784816 - 49784892
Alignment:
Q  345 attttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 421  Q
    ||||||| ||||||||| |||||| ||||||| |||||| ||||||||||||||  || ||||||| ||||||||||    
T  49784816 attttgagttattaatagagtcagggaccaatatgagaacttggtacaaagacatggaccaatttggtggtttactc 49784892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 426
Target Start/End: Complemental strand, 28504782 - 28504683
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaataa 426  Q
    |||||||| |||||||| | |||||| |||||||| ||||| |||| |||||||||||    |||||||||| |||  ||||||||| ||||||||||||    
T  28504782 ttgacaaaaacagagactagtttgaaatattaatagagtcatagactaatttgagaatgacttacaaagacagagacgaatttgatgatttactcaataa 28504683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 422
Target Start/End: Original strand, 33321310 - 33321405
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactca 422  Q
    |||||||||||   ||| ||||||| ||||||||| ||||||| |||||||| | ||||||||||||| ||| || |||| |||||| ||||||||    
T  33321310 ttgacaaagacgtggactattttgagttattaatagagtcagaaaccaatttaaaaatttggtacaaaaacagaggtcaaattgatgatttactca 33321405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 327 - 425
Target Start/End: Complemental strand, 7481128 - 7481031
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaata 425  Q
    ||||||| ||||| ||| ||||| ||||||||||| ||| || |||||| || ||||||||||||||||| |  ||  |||||||||||||||||||||    
T  7481128 ttgacaatgacagtgacgattttaaattattaatagagttag-gaccaaattaagaatttggtacaaagatagtgactaatttgatggtttactcaata 7481031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 327 - 385
Target Start/End: Complemental strand, 33321129 - 33321071
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatt 385  Q
    |||||||||||||||| |||||| ||||||||||| |||||  ||||||||||||||||    
T  33321129 ttgacaaagacagagatcattttaaattattaatagagtcaatgaccaatttgagaatt 33321071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 421
Target Start/End: Original strand, 2464189 - 2464278
Alignment:
Q  332 aaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactc 421  Q
    |||||||  ||| ||||||| ||||||||| |||||  ||||||||||||||||||||||||| ||||| |  |||||| || |||||||    
T  2464189 aaagacaatgactattttgagttattaatagagtcatggaccaatttgagaatttggtacaaatacaaaaactaatttggtgatttactc 2464278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 390
Target Start/End: Original strand, 27134116 - 27134190
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggta 390  Q
    |||||||| | ||||||||||||   |||||||||| ||||||||| ||||| |||||||||| | |||||||||    
T  27134116 ctgagaaacatttgacaaagacatgaaccattttgagttattaatagagtcaaagaccaatttaaaaatttggta 27134190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 398
Target Start/End: Complemental strand, 38208361 - 38208279
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 398  Q
    |||||||||| |||||||||| | | |||||||||| |||| |||| ||||||||||||| || | ||||| ||| |||||||    
T  38208361 ctgagaaatatttgacaaagatataaaccattttgagttatcaatagagtcagagaccaaattaaaaatttagtataaagaca 38208279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 344 - 417
Target Start/End: Original strand, 34535586 - 34535659
Alignment:
Q  344 cattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggttt 417  Q
    |||||||| |||||||||||||||| |||||| |||| ||||| ||||||| | |  || ||||||||||||||    
T  34535586 cattttgagttattaataaagtcagggaccaaattgaaaatttagtacaaatagagggaccaatttgatggttt 34535659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 420
Target Start/End: Original strand, 46410831 - 46410924
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttact 420  Q
    |||| |||||||||||| |||||||| ||||| || ||||| |||| || ||||||||    ||||||||||| || ||||||| |||||||||    
T  46410831 ttgataaagacagagactattttgaaatattattagagtcatagactaaattgagaatcacttacaaagacaatgaccaatttggtggtttact 46410924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 421
Target Start/End: Complemental strand, 6219706 - 6219602
Alignment:
Q  317 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtt 416  Q
    ||||||||  ||||||||||||| ||| | ||| || |||||||||| ||| |||| | ||| |||||    || ||||||||| |||||||||||||||    
T  6219706 tgagaaatttttgacaaagacagtgactaatttaaaatattaataaaatcatagactagtttaagaatgacttataaagacaaaaatcaatttgatggtt 6219607  T
Q  417 tactc 421  Q
    |||||    
T  6219606 tactc 6219602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 421
Target Start/End: Complemental strand, 20993958 - 20993854
Alignment:
Q  317 tgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtt 416  Q
    ||||||| | ||||||||||| || || ||||||| ||||||||| | |||  |||||| ||||||||||  || ||| | | |||||||||||||| ||    
T  20993958 tgagaaacatttgacaaagacggaaactattttgagttattaatagaatcatggaccaagttgagaattttatataaaaatagagatcaatttgatgatt 20993859  T
Q  417 tactc 421  Q
    |||||    
T  20993858 tactc 20993854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 398
Target Start/End: Complemental strand, 49784624 - 49784544
Alignment:
Q  316 ctgagaaataattgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 398  Q
    |||||||| | |||||||||||| |  ||||||||| ||||||||| |||||| ||| || |||| ||||| |||||||||||    
T  49784624 ctgagaaacacttgacaaagacata--ccattttgagttattaatagagtcagggactaaattgaaaatttagtacaaagaca 49784544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 384
Target Start/End: Complemental strand, 15395261 - 15395207
Alignment:
Q  330 acaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaat 384  Q
    |||||||||||||| ||||| || |||||||| ||||| |||| |||||||||||    
T  15395261 acaaagacagagactattttaaaatattaatagagtcatagactaatttgagaat 15395207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 327 - 428
Target Start/End: Original strand, 70837 - 70937
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagacaaagatcaatttgatggtttactcaataa 426  Q
    ||||||||||||  |||||||||||  |||||||| |||||||||||||||||||||||| |||||||||||  || |||||| ||||||| ||| ||||    
T  70837 ttgacaaagacatggaccattttgagctattaatagagtcagagaccaatttgagaatttagtacaaagacagggaccaattt-atggttttctcgataa 70935  T
Q  427 tt 428  Q
    ||    
T  70936 tt 70937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 395
Target Start/End: Complemental strand, 70682 - 70614
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaag 395  Q
    |||||||||||||| | |||||| | ||||||||||||| || ||||||||||||||||  ||||||||    
T  70682 ttgacaaagacagaaatcattttaagttattaataaagtgagggaccaatttgagaattgagtacaaag 70614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 398
Target Start/End: Original strand, 122549 - 122620
Alignment:
Q  327 ttgacaaagacagagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 398  Q
    |||||||||||| |||| | |||||| |||||||| |||||||||| |||||||||||||  ||||||||||    
T  122549 ttgacaaagacaaagactagtttgaaatattaatagagtcagagactaatttgagaatttcttacaaagaca 122620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University