View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14739_high_12 (Length: 383)
Name: NF14739_high_12
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14739_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 43154974 - 43154623
Alignment:
| Q |
18 |
agtggaacaagaaaatatgaatattgaagaagaggaaaatgatcctatgataattgataaagatgagacagagaaactaaataagaaatgtgaggatttt |
117 |
Q |
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| T |
43154974 |
agtggaacaagaaaatatgaatattgaagaagaggaaaatgatcctatgataattgataaagatgagacagagaaactaaataagaaatgtgaggatttt |
43154875 |
T |
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| Q |
118 |
atcnnnnnnntgaaagctactttctgttatgattcaagagctgagaataagttttattttgattatgatcagaatcataaatcacttgtgcttgttattt |
217 |
Q |
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| T |
43154874 |
atcaaaaaaatgaaagctactttctgttatgattcaagagctgagaataagttttattttgattatgatcagaatcataaatcacttgtgcttgttattt |
43154775 |
T |
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| Q |
218 |
agtagtttattagtattacctaaccttaagtttctcagattttaggacacttagaattttcactttggcttgtaggaattaaatatttatcttttctaca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43154774 |
agtagtttattagtattacctaaccttaagtttctcagattttaggacacttagaattttcactttggcttgtaggaattaaatatttatcttttctaca |
43154675 |
T |
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| Q |
318 |
tgatgattgtacaataaaaaactgagatcactctaatatattaaagaataat |
369 |
Q |
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| T |
43154674 |
tgatgattgtacaataaaaaactgagatcactctaatatattaaagaataat |
43154623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 43167971 - 43168073
Alignment:
| Q |
43 |
gaagaagaggaaaatgatcctatgataattgataaagatgagacagagaaactaaataagaaatgtgaggattttatcnnnnnnntgaaagctactttct |
142 |
Q |
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|||||||||| |||||||| || |||||||||| ||||||| ||||| || |||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
43167971 |
gaagaagagggaaatgatcttaggataattgatgaagatgaaacagaagaattaaacaagaaatgtgaggattttatcaaaaagatgaaagctactttct |
43168070 |
T |
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| Q |
143 |
gtt |
145 |
Q |
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||| |
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| T |
43168071 |
gtt |
43168073 |
T |
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