View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14739_high_13 (Length: 373)
Name: NF14739_high_13
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14739_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 47456714 - 47457054
Alignment:
| Q |
18 |
gtataggctgaagatagctttatatgggataaaacaaggaccaaagacttaaaa-acaaaatgatagactctttcttgttccagcaacgattctcccatt |
116 |
Q |
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| T |
47456714 |
gtataggctgaagatagctttatatgggataaaacaaggaccaaagacttaaaaaacaaaatgatagactctttcttgttccagcaacgattctcccatt |
47456813 |
T |
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| Q |
117 |
ctgcagtagttcatgttgtttatatgagggtgcagaacaaagctaagatgttgatgacctgcttgcttgtacctataaataatttagatgacattgagga |
216 |
Q |
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| T |
47456814 |
ctgcagtagttcatgttgtttatgtgagggtgcagaacaaagctaagatgttgatgacctgcttgcttgtacctataaataatttagatgacattgagga |
47456913 |
T |
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| Q |
217 |
actcaaggtaaccatgaatttataattcggtatgacagatttgggtatgctttctaccatgctttttgggaatgaaaatttgttgttactaacaaggggg |
316 |
Q |
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| T |
47456914 |
actcaaggtaaccatgaatttataattcggtatgacagatttgggtatgctctctaccatgctttttgggaatgaaaatttgttgttactaacaaggggg |
47457013 |
T |
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| Q |
317 |
acaatactgcatcagaacaggtataatgcagatgtattgag |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
47457014 |
acaatactgcatcagaacaggtataatgcagatgtattgag |
47457054 |
T |
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