View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14739_high_3 (Length: 577)
Name: NF14739_high_3
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14739_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 15 - 559
Target Start/End: Complemental strand, 44851897 - 44851363
Alignment:
| Q |
15 |
caaagggtagggacgtagtattgcgtgtcagtaagggatggatataaataaaggtgggaaatagaaagatgccaaatttaaaaactacctgaaattgata |
114 |
Q |
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| T |
44851897 |
caaagggtagggacgtagtattgcgtgtcagtatgggatggatataaataaaggtgggaaatagaaagatgccaaatttaaaaactacctgaaattgata |
44851798 |
T |
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| Q |
115 |
tgtgggatgtttgtagcatgcgatatatgaacaatacattttgttacattcttctagacaacagacacatnnnnnnnnnncacttgaatcaatcaagaag |
214 |
Q |
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| T |
44851797 |
tgtgggatgtttgtagcatgcgatatatgaacaatacattttgttacattcttctagacaacagacacataaaaaa----------aatcaatcaagaag |
44851708 |
T |
|
| Q |
215 |
gggcaacaggaatcctttcatcagaaaaaatgctcctcgtaaagtgtaaaatagatgaagacataggtaactcctcaagctcatcgaaaaaatcaaattc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44851707 |
gggcaacaggaatcctttcatcagaaaaaatgctcctcgtaaagtgtaaaatagatgaagacataggtaactcctcaagctcatcgaaaaaatcaaattc |
44851608 |
T |
|
| Q |
315 |
ttctgatttagatgctgacatattctttaactgtgcatagcagagtggctcttcctctaagagaagatctattttgtcaatatggcttttttctatattt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44851607 |
ttctgatttagatgctgacatattctttaactgtgcatagcagagtggctcttcctctaagagaagatctattttgtcaatatggcttttttctatattt |
44851508 |
T |
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| Q |
415 |
agtttgaaaggatcttcttggtctataatgatgtcctctgagcagtgtgttgtagattgtaagtaatgaaaattttcttcatttgtaacttgatcactac |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44851507 |
agtttgaaaggatcttcttggtctataatgatgtcctctgagcagtgtgttgtagattgtaagtaatgaaaattttcttcatttgtaacttgatcactac |
44851408 |
T |
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| Q |
515 |
tactcacagtgctcttattactgttaatctcctcttctacctgtt |
559 |
Q |
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| T |
44851407 |
tactcacagtgctcttattactgttaatctcctcttctacctgtt |
44851363 |
T |
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