View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14739_low_10 (Length: 414)
Name: NF14739_low_10
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14739_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 6 - 408
Target Start/End: Complemental strand, 28421339 - 28420938
Alignment:
| Q |
6 |
aatatttcctcggatattcgcagaaatggatcaataattttctcagaaatcaatgtttatgacgaattcaggatgtttttcgacgaataaattcatagga |
105 |
Q |
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|||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||| |
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| T |
28421339 |
aatatttcctcggaaattcgcagaaatagatcaataatttcctcagaaatcaatgtttctgacgaatttaggatgtttttcaacgaataaattcatagga |
28421240 |
T |
|
| Q |
106 |
aaaccagtcattttgtgtattgttgttaacaatgattcctacttaaattgagatnnnnnnnntgttttctctcttaataaggacagtgctactaatgact |
205 |
Q |
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||| |||| |||| ||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28421239 |
aaatcagttatttcgtgtagtgttgttaacaatgattcatacttaaattgagataaaaaaa-tgttttctctcttaataaggacagtgctactaatgact |
28421141 |
T |
|
| Q |
206 |
ttggagcttaattctatcaaacttattggactattgtcaacgaagatgttaccaatgcagtttggcacttcttcacctctggttggatgttgccaaattt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28421140 |
ttggagcttaattctatcaaacttattggactattgtcaacgaagatgttaccaatgcagtttggcacttcttcacctctggttggatgttgccaaactt |
28421041 |
T |
|
| Q |
306 |
cactgctaacactttggtgttgattcgtgaatcactaaatgttgaggccgtgaagcactctagacctatatcaatggtcaatttcaagttcgagataatt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28421040 |
cactgctaacactttggtgttgattcgtgaatcactaaatgttgaggccgtgaagcactctagacctatatcaatggtcaatttcaagttcgagataatt |
28420941 |
T |
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| Q |
406 |
aca |
408 |
Q |
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||| |
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| T |
28420940 |
aca |
28420938 |
T |
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