View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14739_low_14 (Length: 360)

Name: NF14739_low_14
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14739_low_14
NF14739_low_14
[»] chr6 (11 HSPs)
chr6 (18-338)||(6921292-6921612)
chr6 (41-329)||(6947845-6948133)
chr6 (47-338)||(6935189-6935480)
chr6 (22-329)||(6942913-6943207)
chr6 (21-329)||(6954464-6954772)
chr6 (76-294)||(20770502-20770720)
chr6 (66-135)||(17369675-17369744)
chr6 (80-150)||(14749393-14749463)
chr6 (78-156)||(24254428-24254506)
chr6 (219-291)||(24950272-24950344)
chr6 (82-146)||(24950150-24950214)
[»] chr7 (58 HSPs)
chr7 (51-329)||(1985930-1986208)
chr7 (76-299)||(13416911-13417146)
chr7 (66-329)||(15571885-15572163)
chr7 (66-199)||(18514777-18514910)
chr7 (66-147)||(14076677-14076758)
chr7 (66-147)||(14386705-14386786)
chr7 (223-299)||(14076542-14076618)
chr7 (223-299)||(14386570-14386646)
chr7 (64-194)||(19344563-19344693)
chr7 (76-145)||(660847-660916)
chr7 (77-172)||(19604464-19604559)
chr7 (83-156)||(22021382-22021455)
chr7 (76-184)||(6864807-6864914)
chr7 (77-161)||(29867221-29867305)
chr7 (78-152)||(22028622-22028696)
chr7 (76-146)||(29454103-29454173)
chr7 (77-135)||(29881267-29881325)
chr7 (78-146)||(12819918-12819986)
chr7 (78-150)||(19351071-19351143)
chr7 (76-172)||(20058057-20058153)
chr7 (76-152)||(20352089-20352165)
chr7 (76-152)||(22063636-22063712)
chr7 (76-172)||(22100467-22100563)
chr7 (76-140)||(29874517-29874581)
chr7 (63-146)||(29921980-29922063)
chr7 (213-299)||(18514945-18515031)
chr7 (99-156)||(9807814-9807871)
chr7 (77-150)||(18952906-18952979)
chr7 (77-150)||(18982953-18983026)
chr7 (77-150)||(18997599-18997672)
chr7 (77-153)||(20338917-20338993)
chr7 (219-287)||(24385051-24385119)
chr7 (68-147)||(22070110-22070189)
chr7 (235-282)||(24391269-24391316)
chr7 (80-171)||(36263028-36263119)
chr7 (78-156)||(19325987-19326065)
chr7 (76-146)||(19637217-19637287)
chr7 (66-152)||(20374493-20374579)
chr7 (76-146)||(29859454-29859524)
chr7 (77-146)||(29106814-29106883)
chr7 (76-161)||(29431001-29431086)
chr7 (83-152)||(29445663-29445732)
chr7 (92-188)||(15443922-15444018)
chr7 (78-150)||(19357906-19357978)
chr7 (78-146)||(19722018-19722086)
chr7 (96-152)||(22080862-22080918)
chr7 (78-146)||(29899374-29899442)
chr7 (76-135)||(19645630-19645689)
chr7 (80-171)||(36260228-36260319)
chr7 (80-154)||(13888098-13888172)
chr7 (254-308)||(16839559-16839613)
chr7 (78-124)||(19374778-19374824)
chr7 (80-146)||(21218712-21218778)
chr7 (66-144)||(24002201-24002279)
chr7 (92-189)||(26256732-26256829)
chr7 (92-188)||(15508704-15508800)
chr7 (99-135)||(20133340-20133376)
chr7 (99-135)||(20140841-20140877)
[»] chr4 (19 HSPs)
chr4 (67-189)||(53774797-53774919)
chr4 (76-189)||(3565701-3565814)
chr4 (76-152)||(11970982-11971058)
chr4 (76-152)||(3557720-3557796)
chr4 (76-152)||(11981683-11981759)
chr4 (76-184)||(3560958-3561066)
chr4 (76-189)||(8443454-8443567)
chr4 (80-153)||(837769-837842)
chr4 (81-147)||(35767017-35767083)
chr4 (75-152)||(6372439-6372516)
chr4 (77-146)||(53430100-53430169)
chr4 (248-297)||(53774701-53774750)
chr4 (76-140)||(1686285-1686349)
chr4 (77-152)||(6392815-6392893)
chr4 (78-122)||(53790577-53790621)
chr4 (76-135)||(6113090-6113149)
chr4 (114-189)||(10475164-10475239)
chr4 (116-189)||(10464226-10464299)
chr4 (70-146)||(10468042-10468118)
[»] chr5 (7 HSPs)
chr5 (66-299)||(18964820-18965056)
chr5 (78-189)||(29647633-29647744)
chr5 (78-152)||(29597554-29597628)
chr5 (78-157)||(29642348-29642427)
chr5 (77-152)||(24330900-24330975)
chr5 (95-144)||(23086784-23086833)
chr5 (83-151)||(28763912-28763980)
[»] chr2 (12 HSPs)
chr2 (66-172)||(14514874-14514980)
chr2 (78-152)||(18908811-18908885)
chr2 (78-152)||(18920767-18920841)
chr2 (78-151)||(18913559-18913632)
chr2 (76-151)||(554471-554546)
chr2 (92-147)||(20975557-20975612)
chr2 (234-299)||(20712691-20712756)
chr2 (92-146)||(25698507-25698561)
chr2 (234-299)||(14514730-14514795)
chr2 (244-301)||(20967545-20967602)
chr2 (76-148)||(25377072-25377144)
chr2 (257-299)||(20699621-20699663)
[»] chr1 (9 HSPs)
chr1 (75-146)||(4570927-4570998)
chr1 (75-147)||(50645484-50645556)
chr1 (77-152)||(21855384-21855459)
chr1 (77-143)||(4014966-4015032)
chr1 (76-146)||(39379061-39379131)
chr1 (77-146)||(10218985-10219054)
chr1 (76-141)||(15961233-15961298)
chr1 (75-146)||(17560772-17560843)
chr1 (77-139)||(4016773-4016835)
[»] chr3 (4 HSPs)
chr3 (76-140)||(3625740-3625804)
chr3 (76-148)||(25901279-25901351)
chr3 (76-148)||(25915297-25915369)
chr3 (95-151)||(3837904-3837960)
[»] scaffold0354 (1 HSPs)
scaffold0354 (66-135)||(7474-7543)
[»] scaffold0867 (1 HSPs)
scaffold0867 (76-172)||(4669-4765)
[»] chr8 (7 HSPs)
chr8 (66-164)||(27618473-27618571)
chr8 (92-144)||(29390288-29390340)
chr8 (112-152)||(42846461-42846501)
chr8 (92-144)||(11338592-11338644)
chr8 (92-144)||(11339435-11339487)
chr8 (92-144)||(11345117-11345169)
chr8 (77-121)||(29157073-29157117)
[»] scaffold0097 (1 HSPs)
scaffold0097 (234-299)||(16530-16595)
[»] scaffold0242 (2 HSPs)
scaffold0242 (83-152)||(13737-13806)
scaffold0242 (83-152)||(22572-22641)
[»] scaffold0267 (1 HSPs)
scaffold0267 (95-151)||(13385-13441)


Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 6921292 - 6921612
Alignment:
Q  18 gatgaaataatgaatcattatataactcctgagttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactcc 117  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6921292 gatgaaataatgaatcattatataactccttagttttaaaattgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactcc 6921391  T
Q  118 aaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6921392 aaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagc 6921491  T
Q  218 tcttcatcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6921492 tcttcatcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaat 6921591  T
Q  318 gacaataatatctgcaacgaa 338  Q
    |||||||||||||||||||||    
T  6921592 gacaataatatctgcaacgaa 6921612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 41 - 329
Target Start/End: Original strand, 6947845 - 6948133
Alignment:
Q  41 aactcctgagttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataa 140  Q
    ||||| ||| |||||| ||| ||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  6947845 aactcatgaattttaatatcttttggaagattcacataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccaaagaa 6947944  T
Q  141 caaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaacatcgagggag 240  Q
    |||| |||||||||||  ||||||  |||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6947945 caaagtgggttttcttgaaatcatgtgaaaaacaaaggcaatccatcaacacagaaagagttggaacatcatgtagctcttcatcacaacatcgagggag 6948044  T
Q  241 caacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatc 329  Q
    ||||||  |||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||    
T  6948045 caacaaccgtgtatatctctctgtccccaaatcaagtgagatcatcacaagttgttcaaccataagattcttcaaatgacaataatatc 6948133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 47 - 338
Target Start/End: Original strand, 6935189 - 6935480
Alignment:
Q  47 tgagttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 146  Q
    |||||||||||||| | | ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||| |||    
T  6935189 tgagttttaaaatcttgttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacataat 6935288  T
Q  147 gggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaacatcgagggagcaacaa 246  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||    ||||||||||||||||||||||||||||||||||||    
T  6935289 gggttttcttaaaatcataagaaaaatagaggcaatccatcaatccagaaagagtaggaaagccatgtagctcttcatcacaacatcgagggagcaacaa 6935388  T
Q  247 ttgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatctgcaacgaa 338  Q
    || |||| |||||||||||||||||||||||||||||||||| |||||||| ||  ||||||| ||||||||||||| ||||| | ||||||    
T  6935389 ttttgtacatgtctctgtccccaaatcaagtgagatcatcacgaattgttcgactgtaagattcttcaaatgacaattatatcggtaacgaa 6935480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 22 - 329
Target Start/End: Original strand, 6942913 - 6943207
Alignment:
Q  22 aaataatgaatcattatataactcctgagttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaat 121  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||    
T  6942913 aaataatgaatcattatagaactcctgaattttaaaatcgtttagaagatttgtatatctaattttaaggaattgcgtctaagattcttcaactccaaat 6943012  T
Q  122 tccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctctt 221  Q
    |||||||||||| | |||||||||| |||||||||| ||||||||||||||||||||||||||||             || |||| || |||||||||||    
T  6943013 tccttcatttgctaaataacaaaataggttttcttaaaatcataagaaaaatagaggcaatccat-------------gtaggaaaatcatgtagctctt 6943099  T
Q  222 catcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgaca 321  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||| |||||||||||    
T  6943100 catcacaacattgagggagcaacaattttgtatatgtctctgtccccaaatcaagtgagatcatcacgaattgttcaactgtaagattcttcaaatgaca 6943199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 21 - 329
Target Start/End: Original strand, 6954464 - 6954772
Alignment:
Q  21 gaaataatgaatcattatataactcctgagttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaa 120  Q
    ||||||||||||| ||||  ||||||||| |||||||||| ||||||||| ||| | ||||||||||||  |||||||||||||||||||||||||||||    
T  6954464 gaaataatgaatcgttattgaactcctgacttttaaaatcttttagaagaatcggaaaactaattttaatcaattgagtccaagattcttcaactccaaa 6954563  T
Q  121 ttccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctct 220  Q
    ||||||||||||||| ||||||||||||||||| ||  |||||||||| ||| |||||||||||||||||||||||||||||| | ||     |||||||    
T  6954564 ttccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagaggcaatccatcaatacagaaagagttgcagcaccggttagctct 6954663  T
Q  221 tcatcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgac 320  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||| || |||||||||||| |||||||||| ||||||  ||||||| ||||||||||    
T  6954664 tcatcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaatttttcaactgtaagattcttcaaatgac 6954763  T
Q  321 aataatatc 329  Q
    |||||||||    
T  6954764 aataatatc 6954772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 76 - 294
Target Start/End: Complemental strand, 20770720 - 20770502
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 175  Q
    |||||||||||||||||||||| |||| || ||||||| ||||||||||||||||||||| ||||||||||  ||||| |||  ||||| ||||||| |     
T  20770720 ataactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaaataagtttttttaacatcatgagaaaaacaa 20770621  T
Q  176 aggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaa 275  Q
    |  ||||||||||| ||| |||||||| ||  || | || |   ||||||||||||| ||||||| ||||| ||| | ||||||||| || |||||||||    
T  20770620 atacaatccatcaacacacaaagagtttgattatcaagtggaaattcatcacaacattgagggagtaacaactgtttgtatgtctctttcgccaaatcaa 20770521  T
Q  276 gtgagatcatcacaaattg 294  Q
    | ||||| |||||||||||    
T  20770520 gggagatgatcacaaattg 20770502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 17369744 - 17369675
Alignment:
Q  66 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 135  Q
    ||||||||  ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  17369744 gaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgcca 17369675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 14749463 - 14749393
Alignment:
Q  80 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 150  Q
    |||||||| ||||||||||||||||| |||| ||||||||||||| ||||   ||| | ||||||||||||    
T  14749463 ctaattttgaggaattgagtccaagactcttgaactccaaattccatcatcctccataaaacaaaatgggt 14749393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 24254428 - 24254506
Alignment:
Q  78 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctt 156  Q
    |||| ||||| | ||||||||||||||||| ||| ||||||||||||  ||| ||||| ||||||||||| ||| ||||    
T  24254428 aactgattttgatgaattgagtccaagattgttcgactccaaattccgacatctgccatataacaaaatgagttctctt 24254506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 24950272 - 24950344
Alignment:
Q  219 cttcatcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaa 291  Q
    |||||| | ||| ||||||| ||||||||||| | ||||||||||||| | ||||||||||||| ||| ||||    
T  24950272 cttcattagaacctcgagggggcaacaattgtctgtatgtctctgtcctcgaatcaagtgagatgatcgcaaa 24950344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 24950150 - 24950214
Alignment:
Q  82 aattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 146  Q
    |||||||||||||||| ||||||| || ||||||||||| | | |||| | ||| ||||||||||    
T  24950150 aattttaaggaattgactccaagactcctcaactccaaacttcatcatcttccatataacaaaat 24950214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 58)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 51 - 329
Target Start/End: Original strand, 1985930 - 1986208
Alignment:
Q  51 ttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 150  Q
    |||||| ||| | |||||||||| |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||    
T  1985930 ttttaatatcttctagaagattcatataactaattttaaacaattgagtccaagattcttcaacgccaaattccttcatttgccaaagaacaaaatgggt 1986029  T
Q  151 tttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaacatcgagggagcaacaattgt 250  Q
    ||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||| |||||||||||| |||||||||||||||| |||    
T  1986030 tttcttgaaatcataagaaaaatagaggcaatccatcaacacagaaagagttggaacaccatgtagatcttcatcacaatatcgagggagcaacaactgt 1986129  T
Q  251 gtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatc 329  Q
    |||||| ||||||||||||||||||||||||| || |||| |||||||||  ||||||| ||||||||||||| |||||    
T  1986130 gtatatctctctgtccccaaatcaagtgagataattacaagttgttcaactgtaagattcttcaaatgacaattatatc 1986208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 76 - 299
Target Start/End: Original strand, 13416911 - 13417146
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 175  Q
    |||||||||||||| ||||| |  |||||| ||||||||||||||||||||||||||||| || | ||||| |||||||||| |||||||||||||| |     
T  13416911 ataactaattttaacgaattcaacccaagactcttcaactccaaattccttcatttgccatatgataaaataggttttcttaaaatcataagaaaaacaa 13417010  T
Q  176 aggcaatccatcaatacagaaagag------------ttggaacattatgtagctcttcatcacaacatcgagggagcaacaattgtgtatatgtctctg 263  Q
    || |||||  |||| | ||||||||            |||||  ||   |||||||||| |||||||||||||| |||||||| |||||||||||||| |    
T  13417011 agacaatcattcaacatagaaagagtaggaggaagtattggaggatcgcgtagctcttcctcacaacatcgaggtagcaacaactgtgtatatgtctcag 13417110  T
Q  264 tccccaaatcaagtgagatcatcacaaattgttcaa 299  Q
    ||||||| ||||  ||||| ||||||||||||||||    
T  13417111 tccccaactcaaccgagataatcacaaattgttcaa 13417146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 66 - 329
Target Start/End: Original strand, 15571885 - 15572163
Alignment:
Q  66 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcata 165  Q
    ||||||| | ||||||||||||| ||||||||  |||||| |||||||||||||| ||| |||||||||| || ||||||||||||  |||  |||||||    
T  15571885 gaagatttgaataactaattttatggaattgaacccaagactcttcaactccaaactccctcatttgccacatgacaaaatgggttcccttgaaatcata 15571984  T
Q  166 agaaaaatagaggcaatccatcaatacagaaag------agttgga----acatt-----atgtagctcttcatcacaacatcgagggagcaacaattgt 250  Q
    ||||||| | || |||||||| || ||||||||      |||| |     | |||     || ||  |||||||||||||||||||| |||| | |||||    
T  15571985 agaaaaacaaagacaatccataaacacagaaagataaagagtttgccaagaaatttgagaatataagtcttcatcacaacatcgaggtagcatcgattgt 15572084  T
Q  251 gtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatc 329  Q
     ||||||| ||||||||||||||||| ||||| ||||||||||||||||   ||||||| |||||||||||||||||||    
T  15572085 ctatatgtttctgtccccaaatcaagcgagattatcacaaattgttcaatcgtaagattcttcaaatgacaataatatc 15572163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 66 - 199
Target Start/End: Original strand, 18514777 - 18514910
Alignment:
Q  66 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcata 165  Q
    |||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| | ||||| ||| ||||  |||||| |||||||  |||||||    
T  18514777 gaagattcatataactaattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcata 18514876  T
Q  166 agaaaaatagaggcaatccatcaatacagaaaga 199  Q
    ||||||| | | ||||||||| || |||||||||    
T  18514877 agaaaaacacatgcaatccattaaaacagaaaga 18514910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 14076758 - 14076677
Alignment:
Q  66 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 147  Q
    ||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  14076758 gaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatg 14076677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 14386786 - 14386705
Alignment:
Q  66 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 147  Q
    ||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  14386786 gaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatg 14386705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 14076618 - 14076542
Alignment:
Q  223 atcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 299  Q
    |||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||    
T  14076618 atcacaacatggagggagtaacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaattgctcaa 14076542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 14386646 - 14386570
Alignment:
Q  223 atcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 299  Q
    |||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||    
T  14386646 atcacaacatggagggagtaacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaattgctcaa 14386570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 19344563 - 19344693
Alignment:
Q  64 tagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatca 163  Q
    ||||||||||  | ||||||||||||| |||||||||||||||| |||||||||||||||| |||| ||||| ||||||||||| || |||||   ||      
T  19344563 tagaagattctgaaaactaattttaagaaattgagtccaagattgttcaactccaaattccatcatctgccatataacaaaatgagtgttcttgagattg 19344662  T
Q  164 taagaaaaatagaggcaatccatcaatacag 194  Q
    | ||||||| | ||||| |||||||||||||    
T  19344663 tgagaaaaacaaaggcagtccatcaatacag 19344693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 660847 - 660916
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaa 145  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||||||    
T  660847 ataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaaa 660916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 19604464 - 19604559
Alignment:
Q  77 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaa 172  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| |||| ||| || ||||| | | |||||| |||||||    
T  19604464 taactaattttaaggaattgagtccaggagtcttcaactccaaattccttcatctgccatataataaagtgagttttatgaaaatcatgagaaaaa 19604559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 22021455 - 22021382
Alignment:
Q  83 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctt 156  Q
    |||||||| ||||||||||||||||||||||||||| | ||| |||| ||||| ||||| ||||||||||||||    
T  22021455 attttaagtaattgagtccaagattcttcaactccataatccatcatctgccatataaccaaatgggttttctt 22021382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 6864807 - 6864914
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 175  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||  ||| || || ||||| ||||  ||  |||||| ||||||||||    
T  6864807 ataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattac-aaatgagtttgtttgaaatcatgagaaaaatag 6864905  T
Q  176 aggcaatcc 184  Q
    || ||||||    
T  6864906 agacaatcc 6864914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 29867305 - 29867221
Alignment:
Q  77 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaat 161  Q
    ||||||||| ||||||||||||||||||| |||||||| || |||| |||||||||||| |||| |||||  |||| ||||||||    
T  29867305 taactaattctaaggaattgagtccaagaatcttcaaccccgaatttcttcatttgccatataataaaatcagtttccttagaat 29867221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 22028696 - 22028622
Alignment:
Q  78 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 152  Q
    ||||||| ||||| |||||||||||||| |||||||||||| | ||| |||||| ||| ||||||||||||||||    
T  22028696 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggttt 22028622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 29454103 - 29454173
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 146  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||| | ||||  |||| ||||||||||    
T  29454103 ataactaattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaaat 29454173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 29881325 - 29881267
Alignment:
Q  77 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 135  Q
    ||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||||    
T  29881325 taactaattctaaggaattgagtccaagaatcttcaaccccaaatttcttcatttgcca 29881267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 12819918 - 12819986
Alignment:
Q  78 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 146  Q
    |||| |||||||||||||||||||| |||| |||||||||||||||| |||| ||||| | ||||||||    
T  12819918 aactgattttaaggaattgagtccaggattgttcaactccaaattccgtcatctgccatacaacaaaat 12819986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 19351071 - 19351143
Alignment:
Q  78 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 150  Q
    |||||||||| |||||| |||||||||| || ||||||||||||||| |||| ||||| | ||||||||||||    
T  19351071 aactaattttgaggaatggagtccaagactcctcaactccaaattccatcatctgccataaaacaaaatgggt 19351143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 20058057 - 20058153
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaa 172  Q
    ||||||||||||||| ||||||  |||||| ||||||||||  ||||||| ||||| ||| |||||||||||  ||| |||| ||||||| ||||||    
T  20058057 ataactaattttaagaaattgacaccaagactcttcaactctgaattcctccattttccatataacaaaatgactttgcttaaaatcatacgaaaaa 20058153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 20352165 - 20352089
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 152  Q
    ||||||||||||||  | ||||||||| || ||||||||||||||||||||||||| ||| || |||||||| ||||    
T  20352165 ataactaattttaaaaagttgagtccatgaatcttcaactccaaattccttcatttcccatattacaaaatgagttt 20352089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 22063712 - 22063636
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 152  Q
    |||||||||||| |  || ||||||||||| |||| || ||||||||||||||||||||| ||||||||||| ||||    
T  22063712 ataactaattttgaataactgagtccaagactcttgaaatccaaattccttcatttgccatataacaaaatgagttt 22063636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 22100563 - 22100467
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaa 172  Q
    |||||||||||| |  || ||||||||||| |||| ||||||||||| |||||||||||| |||| |||||| ||||| ||  |||||| |||||||    
T  22100563 ataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaa 22100467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 29874581 - 29874517
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataa 140  Q
    ||||||||||||||| ||| |||||||||| |||||||| ||||||| |||||||||||| ||||    
T  29874581 ataactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatataa 29874517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 29921980 - 29922063
Alignment:
Q  63 ttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 146  Q
    ||||||||||   |||||||||| |||||||||||| |||||| |||||| | ||||||| |||||| ||||| ||||||||||    
T  29921980 ttagaagattttgataactaattctaaggaattgagaccaagaatcttcatccccaaatttcttcatctgccatataacaaaat 29922063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 299
Target Start/End: Original strand, 18514945 - 18515031
Alignment:
Q  213 gtagctcttcatcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 299  Q
    ||||||||| || |||| ||||||||||||| || ||||||||||||||||||  ||||||||| ||||  || ||| |||||||||    
T  18514945 gtagctctttattacaagatcgagggagcaagaactgtgtatatgtctctgtcttcaaatcaagcgagacaataacatattgttcaa 18515031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 9807871 - 9807814
Alignment:
Q  99 tccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctt 156  Q
    ||||||| ||||||||||||||||||||||| ||||| ||||| |||| |||||||||    
T  9807871 tccaagactcttcaactccaaattccttcatctgccatataacgaaatcggttttctt 9807814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 18952906 - 18952979
Alignment:
Q  77 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 150  Q
    ||||||||||||||||| |||||||| || |  |||||||||||||||||||| ||||| || | |||||||||    
T  18952906 taactaattttaaggaactgagtccatgacttgtcaactccaaattccttcatctgccatatgataaaatgggt 18952979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 18982953 - 18983026
Alignment:
Q  77 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 150  Q
    ||||||||||||||||| |||||||| || |  |||||||||||||||||||| ||||| || | |||||||||    
T  18982953 taactaattttaaggaactgagtccaggacttgtcaactccaaattccttcatctgccatatgataaaatgggt 18983026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 18997599 - 18997672
Alignment:
Q  77 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 150  Q
    ||||||||||||||||| |||||||| || |  |||||||||||||||||||| ||||| || | |||||||||    
T  18997599 taactaattttaaggaactgagtccaggacttgtcaactccaaattccttcatctgccatatgataaaatgggt 18997672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 20338993 - 20338917
Alignment:
Q  77 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtttt 153  Q
    ||||| |||| || || |||||||||||| ||||||||||| ||||||||||||| ||| || |||||||| |||||    
T  20338993 taactgatttgaaagagttgagtccaagaatcttcaactcctaattccttcattttccatattacaaaatgagtttt 20338917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 24385119 - 24385051
Alignment:
Q  219 cttcatcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatca 287  Q
    |||||||| ||| | ||||| ||||||||||||| ||| ||||||||||||||| ||||||||| ||||    
T  24385119 cttcatcagaaccttgagggggcaacaattgtgtgtatttctctgtccccaaattaagtgagatgatca 24385051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 22070189 - 22070110
Alignment:
Q  68 agattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 147  Q
    |||||| ||||||||||||| |  ||  |||||||||| |||| ||||||||||| |||||||||||| |||| ||||||    
T  22070189 agattcttataactaattttgaataaccgagtccaagactcttgaactccaaattgcttcatttgccatataataaaatg 22070110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 24391316 - 24391269
Alignment:
Q  235 agggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagat 282  Q
    |||| ||||||||||||| ||||||||| |||||||||||||||||||    
T  24391316 agggggcaacaattgtgtgtatgtctctatccccaaatcaagtgagat 24391269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 36263119 - 36263028
Alignment:
Q  80 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaa 171  Q
    |||| ||||| || |||||||||||| ||||||||||||||||| | ||| | ||| ||||||||||  ||||||||| | |||| ||||||    
T  36263119 ctaactttaatgagttgagtccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttttcttatagtcattagaaaa 36263028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 19325987 - 19326065
Alignment:
Q  78 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctt 156  Q
    |||| ||||| | ||||||||||||||||| ||| ||||||||||||  ||| ||||| ||||||||||| ||| ||||    
T  19325987 aactgattttgatgaattgagtccaagattgttctactccaaattccgacatatgccatataacaaaatgagttctctt 19326065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 19637217 - 19637287
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 146  Q
    |||||||||||||||||   || |||| || |||| |||||||||||||||||||||||| |||| |||||    
T  19637217 ataactaattttaaggagccgaatccacgactcttgaactccaaattccttcatttgccatataataaaat 19637287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 20374493 - 20374579
Alignment:
Q  66 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 152  Q
    |||||||  |||||||||||||||  | |||| |||| || ||| ||||||||||||||||||||| ||| || |||||||| ||||    
T  20374493 gaagattattataactaattttaaaaagttgaatccatgaatctccaactccaaattccttcatttcccatattacaaaatgagttt 20374579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 29859524 - 29859454
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 146  Q
    ||||||||||||||| ||| | |||||||| |||||||||||||||| |||||| | ||| ||||| ||||    
T  29859524 ataactaattttaagaaatggggtccaagaatcttcaactccaaatttcttcatctcccatataacgaaat 29859454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 29106883 - 29106814
Alignment:
Q  77 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 146  Q
    |||||||||||||  | |||||||||||| |||||||| ||||||| |||||| ||||| | ||||||||    
T  29106883 taactaattttaaaaagttgagtccaagactcttcaaccccaaatttcttcatctgccatacaacaaaat 29106814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 161
Target Start/End: Original strand, 29431001 - 29431086
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaat 161  Q
    ||||||||||||||||||||| |||||||| |||| | | ||||||| | ||||  |||| |||||||||| ||| | ||||||||    
T  29431001 ataactaattttaaggaattgggtccaagaatctttagccccaaatttcatcatccgccatataacaaaataggtgtccttagaat 29431086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 29445663 - 29445732
Alignment:
Q  83 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 152  Q
    ||||| || |||||||||||||| |||||||| || ||||||||||| ||||| |||| ||||| |||||    
T  29445663 atttttagaaattgagtccaagagtcttcaacccctaattccttcatctgccatataagaaaatcggttt 29445732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 15444018 - 15443922
Alignment:
Q  92 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatca 188  Q
    |||||||||||||| |||||||||||| | |||||||| ||||| | ||||||    ||| | || ||||||||||||||| | || ||||||||||    
T  15444018 aattgagtccaagactcttcaactccatactccttcatatgccataaaacaaatccagttgtattggaatcataagaaaaacaaagacaatccatca 15443922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 19357978 - 19357906
Alignment:
Q  78 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 150  Q
    |||||||||| | ||||||||||||||| |||| ||||||||||||| |||| | ||| | ||| ||||||||    
T  19357978 aactaatttttaagaattgagtccaagactcttgaactccaaattccatcatcttccataaaacgaaatgggt 19357906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 19722086 - 19722018
Alignment:
Q  78 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 146  Q
    |||| ||||| ||||||||||||||||| |||| ||||||||||||| |||| | ||| | ||||||||    
T  19722086 aactgattttgaggaattgagtccaagaatcttgaactccaaattccatcatcttccataaaacaaaat 19722018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 22080918 - 22080862
Alignment:
Q  96 gagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 152  Q
    |||||||||| |||| ||||||||||| |||||||||||| |||| |||||| ||||    
T  22080918 gagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagttt 22080862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 29899442 - 29899374
Alignment:
Q  78 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 146  Q
    |||||||||| |  ||||||||||| || |||||||| ||||||| |||||| ||||| ||||||||||    
T  29899442 aactaatttttaaaaattgagtccaggactcttcaaccccaaatttcttcatctgccatataacaaaat 29899374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 19645630 - 19645689
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 135  Q
    ||||||||||||||| ||  ||||||| || ||||||| ||||||||||||||| |||||    
T  19645630 ataactaattttaagtaacagagtccatgactcttcaattccaaattccttcatctgcca 19645689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 36260319 - 36260228
Alignment:
Q  80 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaa 171  Q
    ||||||||||  | |||| ||||||| ||||||||||||||||| | ||| | ||| ||||||||||  ||||||||  |||||| ||||||    
T  36260319 ctaattttaataagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttttcttgtaatcattagaaaa 36260228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 13888098 - 13888172
Alignment:
Q  80 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttc 154  Q
    |||| ||||||||||||||||||||| | |||  |||||||||   |||||| ||| |||||||||| |||||||    
T  13888098 ctaaatttaaggaattgagtccaagacttttcgtctccaaattttgtcattttccatataacaaaattggttttc 13888172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 16839559 - 16839613
Alignment:
Q  254 tatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagat 308  Q
    |||||||| || |||||||||||||| || ||||||||||| |||||| ||||||    
T  16839559 tatgtctccgtgcccaaatcaagtgaaataatcacaaattgctcaacagtaagat 16839613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 19374824 - 19374778
Alignment:
Q  78 aactaattttaaggaattgagtccaagattcttcaactccaaattcc 124  Q
    ||||||||||||| ||||||||||||||   ||||||||||||||||    
T  19374824 aactaattttaagaaattgagtccaagaccgttcaactccaaattcc 19374778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 21218712 - 21218778
Alignment:
Q  80 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 146  Q
    |||| ||| ||||||||||||||||| |  ||| ||||||||||| |||||||||| ||||| ||||    
T  21218712 ctaaatttgaggaattgagtccaagacttatcatctccaaattccgtcatttgccatataaccaaat 21218778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #54
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 24002279 - 24002201
Alignment:
Q  66 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 144  Q
    ||||||||  ||||||||| ||||| |||||||||||||| |||| ||||||  | |||||||| ||||| | ||||||    
T  24002279 gaagattctgataactaatcttaagtaattgagtccaagactcttgaactccgtactccttcatatgccataaaacaaa 24002201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 26256829 - 26256732
Alignment:
Q  92 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaa 189  Q
    |||||||||||||| |||| ||||||| | |||||||| ||||| | ||||||||   ||| ||| | ||||| ||||||| | ||||| ||||||||    
T  26256829 aattgagtccaagactcttgaactccatactccttcatctgccataaaacaaaatcattttccttggtatcatgagaaaaacaaaggcattccatcaa 26256732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #56
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 15508800 - 15508704
Alignment:
Q  92 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatca 188  Q
    |||||||||| ||| | |||||||||| | |||||||| ||||| | ||||||    ||||| || ||||||||||||||| | || ||||||||||    
T  15508800 aattgagtcctagactattcaactccatactccttcatatgccaaaaaacaaatccagttttattggaatcataagaaaaacaaagacaatccatca 15508704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #57
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 20133340 - 20133376
Alignment:
Q  99 tccaagattcttcaactccaaattccttcatttgcca 135  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  20133340 tccaagaatcttcaactccaaattctttcatttgcca 20133376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 20140841 - 20140877
Alignment:
Q  99 tccaagattcttcaactccaaattccttcatttgcca 135  Q
    ||||||| | |||||||||||||||||||||||||||    
T  20140841 tccaagaattttcaactccaaattccttcatttgcca 20140877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 67 - 189
Target Start/End: Complemental strand, 53774919 - 53774797
Alignment:
Q  67 aagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataa 166  Q
    |||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||  ||| ||||||||    
T  53774919 aagattctgataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatgagtttctttaaaatcataa 53774820  T
Q  167 gaaaaatagaggcaatccatcaa 189  Q
    |||||| | |  |||||||||||    
T  53774819 gaaaaacaaatacaatccatcaa 53774797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 189
Target Start/End: Complemental strand, 3565814 - 3565701
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 175  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||| |||| ||||| |||||||||| ||  |||||||||| |     
T  3565814 ataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggttttcttataacaataagaaaaacaa 3565715  T
Q  176 aggcaatccatcaa 189  Q
    ||||| ||| ||||    
T  3565714 aggcagtccctcaa 3565701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 11970982 - 11971058
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 152  Q
    |||||||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  11970982 ataactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaaatgagttt 11971058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 3557796 - 3557720
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 152  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||| |||| ||||| |||||    
T  3557796 ataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatatgccatataataaaatcggttt 3557720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 11981683 - 11981759
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 152  Q
    ||||||||||||||| ||| ||||||| || ||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  11981683 ataactaattttaagaaatcgagtccaggactcttccactccaaattccttcatttgccatataacaaaatgagttt 11981759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 3560958 - 3561066
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 175  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||  ||||| ||||| |||| ||||| ||||| |||  ||  |||||||||| |     
T  3560958 ataactaattttaagaaattgagtccaagactcttcaaccccaaattttttcatctgccaaataataaaatcggtttccttgtaagaataagaaaaacaa 3561057  T
Q  176 aggcaatcc 184  Q
    |||||||||    
T  3561058 aggcaatcc 3561066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 76 - 189
Target Start/End: Original strand, 8443454 - 8443567
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 175  Q
    ||||||||||||||  |||||| ||||||| || | ||||||||| |||||||| ||||| |||||| |||| ||| ||||  |||||||||||||| |     
T  8443454 ataactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatctgccaaataacataatgagttctcttgaaatcataagaaaaacaa 8443553  T
Q  176 aggcaatccatcaa 189  Q
    || || ||||||||    
T  8443554 agacagtccatcaa 8443567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 153
Target Start/End: Complemental strand, 837842 - 837769
Alignment:
Q  80 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtttt 153  Q
    ||||||||||  |||||| ||||||| |||| ||| ||||| | |||||||||||| |||||||||||||||||    
T  837842 ctaattttaaataattgaatccaagactcttgaacaccaaaattcttcatttgccatataacaaaatgggtttt 837769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 35767083 - 35767017
Alignment:
Q  81 taattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 147  Q
    |||||||||||| |||| ||||||| ||||||||||||||||| | ||| | ||| |||||||||||    
T  35767083 taattttaaggagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaatg 35767017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 6372516 - 6372439
Alignment:
Q  75 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 152  Q
    ||||||||||||||   |||||| || |||| |||| ||||||| | |||||||||||||| |||| |||||||||||    
T  6372516 tataactaattttatataattgaatctaagactcttgaactccagaatccttcatttgccatataataaaatgggttt 6372439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 53430100 - 53430169
Alignment:
Q  77 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 146  Q
    ||||||||||||||||||||||||||||| |||||  | ||| ||| |||||| ||||| || |||||||    
T  53430100 taactaattttaaggaattgagtccaagaatcttcggccccatatttcttcatctgccatatgacaaaat 53430169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 53774750 - 53774701
Alignment:
Q  248 tgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttc 297  Q
    |||||||||||||||||| |||||||||| || || ||||||||||||||    
T  53774750 tgtgtatatgtctctgtctccaaatcaagcgaaataatcacaaattgttc 53774701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 1686285 - 1686349
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataa 140  Q
    |||||||  |||||| |||||||||||||| || ||||| |||||||||||||| ||||| ||||    
T  1686285 ataactatatttaagaaattgagtccaagactcgtcaacgccaaattccttcatctgccatataa 1686349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 6392893 - 6392815
Alignment:
Q  77 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca---gataacaaaatgggttt 152  Q
    |||||||||||||  |||||| ||||||| || | ||||||||| ||||||||||||||   ||| |||||||||||||    
T  6392893 taactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatttgccatatgatgacaaaatgggttt 6392815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 53790621 - 53790577
Alignment:
Q  78 aactaattttaaggaattgagtccaagattcttcaactccaaatt 122  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||    
T  53790621 aactaattttaagaaattgagtccaagattgttcaaatccaaatt 53790577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 6113149 - 6113090
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 135  Q
    ||||||||||  |||||| ||||||||||| |||| ||||||||||||| ||||| ||||    
T  6113149 ataactaattcgaaggaactgagtccaagactctttaactccaaattccatcattcgcca 6113090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 10475239 - 10475164
Alignment:
Q  114 ctccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaa 189  Q
    ||||||| |||||||||||||| |||||||||||||| || |   |||||||| ||||| | || |||||||||||    
T  10475239 ctccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaa 10475164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 10464299 - 10464226
Alignment:
Q  116 ccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaa 189  Q
    ||||| |||||||||||||| |||||||||||||| || |   |||||||| ||||| | || |||||||||||    
T  10464299 ccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaa 10464226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 10468118 - 10468042
Alignment:
Q  70 attcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 146  Q
    |||| ||||| |||||||||  |||||| |||||||    | ||||||||| |||||||||||||| ||||||||||    
T  10468118 attcttataagtaattttaaataattgaatccaagacgactgaactccaaaatccttcatttgccatataacaaaat 10468042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 66 - 299
Target Start/End: Original strand, 18964820 - 18965056
Alignment:
Q  66 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcata 165  Q
    ||||||||  ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||  ||||| ||||| | |  |||||     
T  18964820 gaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaagatcatg 18964919  T
Q  166 agaaaaatagaggcaatccatcaatacagaaagagttggaacatta---tgtagctcttcatcacaacatcgagggagcaacaattgtgtatatgtctct 262  Q
    || |||| | ||||||| |||||||||| |||| || |||  || |    || ||   |||||||||||| ||||||| ||||| |||||| |||||||     
T  18964920 agtaaaacaaaggcaattcatcaatacacaaagggtcggagtatcaagcggttgcaactcatcacaacatggagggagtaacaactgtgtaaatgtctcc 18965019  T
Q  263 gtccccaaatcaagtgagatcatcacaaattgttcaa 299  Q
     |||||| |||||||||||| ||||||||||| ||||    
T  18965020 atccccagatcaagtgagataatcacaaattgctcaa 18965056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 29647744 - 29647633
Alignment:
Q  78 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagag 177  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||  |||||||||| ||||||||||| |||||||||  ||  | ||||||| | ||    
T  29647744 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacaaaatgagttttcttaagatggtgagaaaaacaaag 29647645  T
Q  178 gcaatccatcaa 189  Q
    ||||||||||||    
T  29647644 gcaatccatcaa 29647633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 29597554 - 29597628
Alignment:
Q  78 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 152  Q
    |||||||||||||||||||||||||||||| |||||||||||||||  |||||||||| ||||||||||| ||||    
T  29597554 aactaattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagttt 29597628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 29642427 - 29642348
Alignment:
Q  78 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctta 157  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||  |||||||||| ||||| ||||| |||||||||    
T  29642427 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttctta 29642348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 24330900 - 24330975
Alignment:
Q  77 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 152  Q
    ||||||| |||||||| |||||||||||| |||||||| |||||||||||||| | ||| |||||||||| |||||    
T  24330900 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggttt 24330975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 23086833 - 23086784
Alignment:
Q  95 tgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 144  Q
    ||||||||||| |||| ||||||||| |||||||| ||||| ||||||||    
T  23086833 tgagtccaagactcttgaactccaaactccttcatctgccatataacaaa 23086784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 28763912 - 28763980
Alignment:
Q  83 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 151  Q
    ||||| |||||| || ||||||| | |||||||||||||| | |||| | ||| |||||||||||||||    
T  28763912 attttgaggaatcgactccaagacttttcaactccaaattgcgtcatcttccatataacaaaatgggtt 28763980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 66 - 172
Target Start/End: Complemental strand, 14514980 - 14514874
Alignment:
Q  66 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcata 165  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| ||| ||||||| ||||||||||||  |||||||    
T  14514980 gaagattcatataactaattttaaggaattgagtccaagaatcttcaactccaaattcatccattttccatataacaagatgggttttcttgaaatcata 14514881  T
Q  166 agaaaaa 172  Q
    |||||||    
T  14514880 agaaaaa 14514874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 18908811 - 18908885
Alignment:
Q  78 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 152  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||| |||| | ||| ||||||||||||||||    
T  18908811 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggttt 18908885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 18920767 - 18920841
Alignment:
Q  78 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 152  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||| |||| | ||| ||||||||||||||||    
T  18920767 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggttt 18920841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 18913559 - 18913632
Alignment:
Q  78 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 151  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||| |||| | ||| |||||||||||||||    
T  18913559 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggtt 18913632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 554546 - 554471
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 151  Q
    ||||||||||||||| |||||||||||||| |||| ||||||| ||||  |||||||||| |||| || |||||||    
T  554546 ataactaattttaagtaattgagtccaagactctttaactccatattctatcatttgccatataataagatgggtt 554471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 20975612 - 20975557
Alignment:
Q  92 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 147  Q
    |||||| ||||||| |||||||||||||||||| |||||||||| |||||||||||    
T  20975612 aattgaatccaagaatcttcaactccaaattccctcatttgccatataacaaaatg 20975557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 20712691 - 20712756
Alignment:
Q  234 gagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 299  Q
    |||||||||||| |||||| ||||||||  |||||||||| || ||||| ||||||||||||||||    
T  20712691 gagggagcaacatttgtgtgtatgtctccatccccaaatcgagggagatgatcacaaattgttcaa 20712756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 25698561 - 25698507
Alignment:
Q  92 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 146  Q
    |||| ||||||||| |||||||||||||||||  |||||||||| ||||||||||    
T  25698561 aatttagtccaagagtcttcaactccaaattctctcatttgccatataacaaaat 25698507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 14514795 - 14514730
Alignment:
Q  234 gagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 299  Q
    |||||||||| || ||||||||||||||||||| ||||||||| ||||  |  |||||||||||||    
T  14514795 gagggagcaagaactgtgtatatgtctctgtcctcaaatcaagcgagacaaaaacaaattgttcaa 14514730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 20967602 - 20967545
Alignment:
Q  244 caattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaaca 301  Q
    ||||||||| || |||||||||||||||||||| || || ||||||||||| ||||||    
T  20967602 caattgtgtgtaggtctctgtccccaaatcaagggaaatgatcacaaattgctcaaca 20967545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 25377144 - 25377072
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgg 148  Q
    ||||||||||||||  |||||| ||||||| |||| ||||||||| ||||||||   ||| ||||||||||||    
T  25377144 ataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatcatccatataacaaaatgg 25377072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 299
Target Start/End: Original strand, 20699621 - 20699663
Alignment:
Q  257 gtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 299  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||    
T  20699621 gtctctgttcccaaatcaagtgagataatcacaaattgatcaa 20699663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 4570998 - 4570927
Alignment:
Q  75 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 146  Q
    |||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||| ||||||||||    
T  4570998 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 4570927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 50645484 - 50645556
Alignment:
Q  75 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 147  Q
    |||||||||||||||  |||||| ||||||| |||| ||||||||| |||||||||||||| |||||||||||    
T  50645484 tataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatttgccacataacaaaatg 50645556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 21855384 - 21855459
Alignment:
Q  77 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 152  Q
    ||||||| |||||||| |||||||||||| |||||||| |||||||||||||| | ||| |||||||||| |||||    
T  21855384 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggttt 21855459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 4014966 - 4015032
Alignment:
Q  77 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaa 143  Q
    ||||||| ||||||||||||||||||||| |||||||| ||||||| |||||| ||||| |||||||    
T  4014966 taactaactttaaggaattgagtccaagaatcttcaaccccaaatttcttcatctgccatataacaa 4015032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 39379061 - 39379131
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 146  Q
    |||||| |||||||| |||||||||||||| |||||||| |||||||||||||| ||||| |||| |||||    
T  39379061 ataactgattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaat 39379131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 10219054 - 10218985
Alignment:
Q  77 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 146  Q
    |||||||||||||| |||||||||||||| |||||||  ||||||| |||||||||||| | ||||||||    
T  10219054 taactaattttaagtaattgagtccaagaatcttcaatcccaaatttcttcatttgccatacaacaaaat 10218985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 15961298 - 15961233
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataac 141  Q
    |||| ||| ||||| |||||||||||||||||||||| ||||||||| |||||||| ||| |||||    
T  15961298 ataattaactttaaagaattgagtccaagattcttcagctccaaatttcttcattttccatataac 15961233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 17560772 - 17560843
Alignment:
Q  75 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 146  Q
    ||||||||||| |||||||| | |||||||| |||||||| ||||||| |||||| ||||| ||||| ||||    
T  17560772 tataactaattataaggaatggtgtccaagaatcttcaaccccaaatttcttcatgtgccatataaccaaat 17560843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 4016773 - 4016835
Alignment:
Q  77 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagata 139  Q
    ||||||| |||||  || |||||||| || |||||||||||||||| |||||| |||||||||    
T  4016773 taactaaatttaaacaactgagtccaggaatcttcaactccaaatttcttcatctgccagata 4016835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 3625804 - 3625740
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataa 140  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||| ||||    
T  3625804 ataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataa 3625740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 25901279 - 25901351
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgg 148  Q
    |||||||||||| |  |||||| ||||||| |||| ||||| ||| |||||||||| ||| ||||||||||||    
T  25901279 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 25901351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 25915297 - 25915369
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgg 148  Q
    |||||||||||| |  |||||| ||||||| |||| ||||| ||| |||||||||| ||| ||||||||||||    
T  25915297 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 25915369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 3837960 - 3837904
Alignment:
Q  95 tgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 151  Q
    ||||||||||| |||| ||||||||| || ||||||| ||| | |||||||||||||    
T  3837960 tgagtccaagactcttgaactccaaactctttcatttcccacaaaacaaaatgggtt 3837904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 7543 - 7474
Alignment:
Q  66 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 135  Q
    ||||||||  ||| ||||||||||||||||||  |||||| || ||||||||||||||||||||||||||    
T  7543 gaagattccgatagctaattttaaggaattgaacccaagactcatcaactccaaattccttcatttgcca 7474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 4669 - 4765
Alignment:
Q  76 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaa 172  Q
    |||||||||||| |  || ||||||||||| |||| ||||||||||| |||||||||||| |||| |||||| ||||| ||  |||||| |||||||    
T  4669 ataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaa 4765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 27618571 - 27618473
Alignment:
Q  66 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcat 164  Q
    ||||||||  |||||||| |||||| || ||||||||||| ||||||||||| | ||| | ||||| ||| ||||||||||| |||| |||| ||||||    
T  27618571 gaagattctgataactaactttaagcaactgagtccaagactcttcaactccgagttcttccattttccatataacaaaatgagtttgcttaaaatcat 27618473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 29390340 - 29390288
Alignment:
Q  92 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 144  Q
    |||| ||| |||||||||||||||||||||||| |||| ||||| ||||||||    
T  29390340 aatttagttcaagattcttcaactccaaattccctcatctgccatataacaaa 29390288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 42846461 - 42846501
Alignment:
Q  112 aactccaaattccttcatttgccagataacaaaatgggttt 152  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  42846461 aactccaaaatccttcatttgccaaataacaaaatgggttt 42846501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 11338592 - 11338644
Alignment:
Q  92 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 144  Q
    ||||||| ||||||||||| || |||||| || ||||||||||| ||||||||    
T  11338592 aattgagaccaagattcttgaaatccaaactctttcatttgccatataacaaa 11338644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 11339435 - 11339487
Alignment:
Q  92 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 144  Q
    ||||||||||||||||||| || |||||| ||  |||||||||| ||||||||    
T  11339435 aattgagtccaagattcttgaaatccaaactcgctcatttgccatataacaaa 11339487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 11345117 - 11345169
Alignment:
Q  92 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 144  Q
    ||||||||||||||||||| || |||||| || | ||||||||| ||||||||    
T  11345117 aattgagtccaagattcttgaaatccaaactcttccatttgccatataacaaa 11345169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 29157117 - 29157073
Alignment:
Q  77 taactaattttaaggaattgagtccaagattcttcaactccaaat 121  Q
    |||||||||||||||| ||||||||| |  |||||||||||||||    
T  29157117 taactaattttaaggagttgagtccatggctcttcaactccaaat 29157073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 16530 - 16595
Alignment:
Q  234 gagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 299  Q
    |||||||||||| |||||| ||||||||  |||||||||| || ||||| ||||||||||||||||    
T  16530 gagggagcaacatttgtgtgtatgtctccatccccaaatcgagggagatgatcacaaattgttcaa 16595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 13737 - 13806
Alignment:
Q  83 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 152  Q
    |||||||| || |||||||||||||| |||  ||| ||||||||||| ||||| |||| ||||| |||||    
T  13737 attttaagaaactgagtccaagattcatcatttcctaattccttcatctgccatataagaaaatcggttt 13806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 22572 - 22641
Alignment:
Q  83 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 152  Q
    |||||||| || |||||||||||||| |||  ||| ||||||||||| ||||| |||| ||||| |||||    
T  22572 attttaagaaactgagtccaagattcatcatttcctaattccttcatctgccatataagaaaatcggttt 22641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 13441 - 13385
Alignment:
Q  95 tgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 151  Q
    ||||||||||| |||| ||||||||| || ||||||| ||| | |||||||||||||    
T  13441 tgagtccaagactcttgaactccaaactctttcatttcccacaaaacaaaatgggtt 13385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University