View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14739_low_15 (Length: 356)
Name: NF14739_low_15
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14739_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 34866498 - 34866830
Alignment:
| Q |
18 |
aaatactacccgatgctagacttaggccctcccaaaatacccaagttcctgtcaatattttacttatttacttgcattaataaataagccacctataaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866498 |
aaatactacccgatgctagacttaggccctcccaaaatacccaagttcctgtcaatattttacttatttacttgcattaataaataagccacctataaat |
34866597 |
T |
|
| Q |
118 |
tgaattaagggagtgtttggaagagcttatttacaacttatttgaatttacctgatgacataagcccttgtcgaagtgttcagaacatgacagaacttat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866598 |
tgaattaagggagtgtttggaagagcttatttacaacttatttgaatttacctgatgacataagcccttgtcgaagtgttcagaacatgacagaacttat |
34866697 |
T |
|
| Q |
218 |
aaaaatagcttataacatgtttaaaagctgtcttaaaatttggattggctctaactcaaccctacaaaatcagttagtaatgtgaaggatatccaccccc |
317 |
Q |
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| T |
34866698 |
aaaaatagcttataacatgtttaaaagctgtcttaaaatttggattggctctaactcaaccctacaaaatcagttagtaatgtgaaggatatccaccccc |
34866797 |
T |
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| Q |
318 |
ttataagctctactctgaccatattaatatatt |
350 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34866798 |
ttataagctctactctgaccatattaatatatt |
34866830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 45 - 349
Target Start/End: Complemental strand, 51857530 - 51857227
Alignment:
| Q |
45 |
cctcccaaaatacccaagttcctgtcaatattttacttatttacttgcattaataaataagccacctataaattgaattaagggagtgtttggaagagct |
144 |
Q |
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| T |
51857530 |
cctcccaaaatacccaagtccctgtcaatattttactcatctacttgcattaataaataagccacatataaatagtattaagggagtgtttggaagatct |
51857431 |
T |
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| Q |
145 |
tatttacaacttatttgaatttacctgatgacataagcccttgtcgaagtgttcagaacatgacagaacttataaaaatagcttataacatgtttaaaag |
244 |
Q |
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|| | ||||||| |||||||||||||||||||| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51857430 |
tactaacaacttttttgaatttacctgatgacacatgcccctgtcgaagtgtttggaacatgacagaacttataaaaatagcttataacatgtttaaaag |
51857331 |
T |
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| Q |
245 |
ctgtcttaaaatttggattggctctaactcaaccctacaaaatcagttagtaatgtgaaggatatccacccccttataagctctactctgaccatattaa |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| ||| |||| ||||| ||||| || |||||||| |
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| T |
51857330 |
ctgtcttaaaatttggattggctctaactcaaccctacaaaatcaatttgtaaagtgaaggatatcgaccaccttctaagc-ctactttggccatattac |
51857232 |
T |
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| Q |
345 |
tatat |
349 |
Q |
| |
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||||| |
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|
| T |
51857231 |
tatat |
51857227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 11171478 - 11171515
Alignment:
| Q |
130 |
gtgtttggaagagcttatttacaacttatttgaattta |
167 |
Q |
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||||||||||||| |||||||||||||||||||||||| |
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| T |
11171478 |
gtgtttggaagagtttatttacaacttatttgaattta |
11171515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 37579900 - 37579956
Alignment:
| Q |
254 |
aatttggattggctctaactcaaccctacaaaatcagttagtaatgtgaaggatatc |
310 |
Q |
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||||| |||| | |||||||||||||||||||||||| | |||| ||||| |||||| |
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| T |
37579900 |
aatttagatttggtctaactcaaccctacaaaatcagcttgtaaggtgaaagatatc |
37579956 |
T |
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