View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14739_low_17 (Length: 355)

Name: NF14739_low_17
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14739_low_17
NF14739_low_17
[»] chr6 (58 HSPs)
chr6 (9-339)||(26811534-26811866)
chr6 (9-240)||(26617746-26617977)
chr6 (9-240)||(26723674-26723905)
chr6 (30-339)||(26949686-26949995)
chr6 (34-339)||(27214442-27214750)
chr6 (34-339)||(27234478-27234786)
chr6 (30-339)||(26848685-26848994)
chr6 (30-339)||(25071684-25071993)
chr6 (34-283)||(25579800-25580049)
chr6 (34-283)||(26142946-26143195)
chr6 (30-339)||(26635715-26636024)
chr6 (30-339)||(26741681-26741990)
chr6 (30-339)||(26975077-26975386)
chr6 (234-325)||(27665174-27665265)
chr6 (34-283)||(25538621-25538870)
chr6 (162-280)||(28181198-28181316)
chr6 (30-115)||(26959415-26959500)
chr6 (48-283)||(27337936-27338171)
chr6 (48-283)||(27398676-27398911)
chr6 (34-283)||(26056007-26056256)
chr6 (34-283)||(26075977-26076226)
chr6 (30-280)||(28185450-28185700)
chr6 (30-280)||(28297566-28297816)
chr6 (30-280)||(28514257-28514507)
chr6 (162-280)||(28227034-28227152)
chr6 (188-292)||(2184360-2184464)
chr6 (73-280)||(28242888-28243095)
chr6 (162-280)||(28234648-28234765)
chr6 (162-280)||(28325565-28325683)
chr6 (179-283)||(27677616-27677720)
chr6 (179-283)||(27679027-27679131)
chr6 (105-292)||(28098297-28098484)
chr6 (234-339)||(26959190-26959296)
chr6 (235-292)||(2184970-2185027)
chr6 (162-283)||(26048926-26049047)
chr6 (162-283)||(26070095-26070216)
chr6 (242-324)||(26617359-26617441)
chr6 (162-272)||(26623068-26623178)
chr6 (34-283)||(26656070-26656319)
chr6 (242-324)||(26723287-26723369)
chr6 (162-272)||(26729046-26729156)
chr6 (34-283)||(26762041-26762290)
chr6 (161-283)||(26823921-26824043)
chr6 (30-100)||(26937370-26937440)
chr6 (73-119)||(28234808-28234854)
chr6 (140-296)||(26937162-26937318)
chr6 (83-283)||(27718285-27718485)
chr6 (65-120)||(24715829-24715884)
chr6 (217-292)||(26341974-26342049)
chr6 (34-120)||(25481986-25482072)
chr6 (195-273)||(27706420-27706498)
chr6 (158-216)||(29826175-29826233)
chr6 (218-283)||(28150018-28150083)
chr6 (215-283)||(25481823-25481891)
chr6 (83-283)||(27610908-27611108)
chr6 (59-115)||(27664999-27665055)
chr6 (73-125)||(28181353-28181405)
chr6 (73-125)||(28227189-28227241)
[»] chr2 (2 HSPs)
chr2 (30-337)||(17993537-17993844)
chr2 (158-198)||(3279857-3279897)
[»] scaffold0038 (6 HSPs)
scaffold0038 (162-280)||(34809-34927)
scaffold0038 (162-280)||(27532-27650)
scaffold0038 (73-280)||(43050-43257)
scaffold0038 (162-280)||(116880-116998)
scaffold0038 (73-119)||(34970-35016)
scaffold0038 (73-125)||(27687-27739)
[»] chr4 (10 HSPs)
chr4 (122-282)||(5090899-5091059)
chr4 (162-283)||(18655449-18655570)
chr4 (162-283)||(18679539-18679660)
chr4 (33-118)||(18699243-18699328)
chr4 (74-118)||(18655361-18655405)
chr4 (74-118)||(18723969-18724013)
chr4 (74-118)||(18731388-18731432)
chr4 (33-118)||(18679410-18679495)
chr4 (162-283)||(18699372-18699493)
chr4 (162-283)||(18731476-18731597)
[»] scaffold0019 (1 HSPs)
scaffold0019 (65-283)||(58170-58388)
[»] chr1 (3 HSPs)
chr1 (74-283)||(268241-268450)
chr1 (34-121)||(28127523-28127610)
chr1 (34-121)||(28164207-28164294)
[»] chr8 (2 HSPs)
chr8 (74-283)||(29273667-29273876)
chr8 (245-322)||(31903893-31903970)
[»] scaffold0349 (1 HSPs)
scaffold0349 (179-273)||(3423-3517)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 58)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 9 - 339
Target Start/End: Complemental strand, 26811866 - 26811534
Alignment:
Q  9 gagtgaaatgaagaa--gcgtacttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttctt 106  Q
    |||||||||||||||  || |||||||||||| |||||||||||||  || |||||| ||||||| ||||||||||||||||||| |||||||||| |||    
T  26811866 gagtgaaatgaagaatagcttacttgaaatgaaagccagataagttaccaacttggttaagagctatcttccatttctgcaaccgatccatgttttcctt 26811767  T
Q  107 gttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaaga 206  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||||| | ||| | |||||||| |||||||||||||||||| ||||||||||||| |||    
T  26811766 gttattttggaacatttcttcaaactcagtaagtgcttcaccatacttgttattttgatgtcgcacgtgagaaggttccacaccatagaaaactggtaga 26811667  T
Q  207 acgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaa 306  Q
    || || ||||  |||||||||||||||| |||||| |||||||| ||||||| |||||| || ||||| ||||||||||  |||||||||||||  ||||    
T  26811666 acaaggcgacctttttccttgaagtagttaatgatgtggacaagctcatctaaacaaaacgacgaagttgcatagttctcagagaatacaataatggcaa 26811567  T
Q  307 tcctggagtcttcaatgcttttgaggagcgaag 339  Q
    |||| |||| ||||||||| |||||||||||||    
T  26811566 tcctagagtgttcaatgctcttgaggagcgaag 26811534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 26617977 - 26617746
Alignment:
Q  9 gagtgaaatgaagaagcgtacttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgt 108  Q
    |||||||||||||||| || ||||||||||||||||||||||||   |||||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  26617977 gagtgaaatgaagaagtgtgcttgaaatgatagccagataagttataagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgt 26617878  T
Q  109 tattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaac 208  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| ||| | | ||||||||| | |||||||||||||||||||||||||||||||||    
T  26617877 tattttggaacctttcttcaaactcagtaagtgcttcaccatacctgttattgtaatgtcgtacttcagaaggttccacatcatagaaaactggaagaac 26617778  T
Q  209 gagacgactcttttccttgaagtagtgaatga 240  Q
     || ||||| |||||||| |||||||||||||    
T  26617777 aaggcgactattttcctttaagtagtgaatga 26617746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 26723905 - 26723674
Alignment:
Q  9 gagtgaaatgaagaagcgtacttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgt 108  Q
    |||||||||||||||| || ||||||||||||||||||||||||   |||||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  26723905 gagtgaaatgaagaagtgtgcttgaaatgatagccagataagttataagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgt 26723806  T
Q  109 tattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaac 208  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| ||| | | ||||||||| | |||||||||||||||||||||||||||||||||    
T  26723805 tattttggaacctttcttcaaactcagtaagtgcttcaccatacctgttattgtaatgtcgtacttcagaaggttccacatcatagaaaactggaagaac 26723706  T
Q  209 gagacgactcttttccttgaagtagtgaatga 240  Q
     || ||||| |||||||| |||||||||||||    
T  26723705 aaggcgactattttcctttaagtagtgaatga 26723674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 30 - 339
Target Start/End: Complemental strand, 26949995 - 26949686
Alignment:
Q  30 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 129  Q
    |||||||| |||||||||||||  ||| ||| ||  |||||| ||||||||||| ||||||||||||||||||| ||| | ||||||||||| ||||||     
T  26949995 ttgaaatggtagccagataagtcagcaactttgttcagagctatcttccatttcagcaaccgctccatgttttttttgctcttttggaacctctcttcat 26949896  T
Q  130 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 229  Q
     || || ||||||| ||||||| |||| | |||||||||| |||||||||||||| ||||||||||||||||| ||||| || ||||  |||||||||||    
T  26949895 gcttagcaagtgcttcaccataactataattctgatgtcgcacgtgagaaggttctacatcatagaaaactggcagaacaaggcgacctttttccttgaa 26949796  T
Q  230 gtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgcttttg 329  Q
    |||||||||||||||||||||||| |||| |||||||||||||| |||||| | ||| || || || ||||  ||||| || || |||||||| || |||    
T  26949795 gtagtgaatgatatggacaagttcgtctaaacaaaatgaagaagaagcatattccttagaaaagacgataatggcaattctcgattcttcaattctcttg 26949696  T
Q  330 aggagcgaag 339  Q
    ||||| ||||    
T  26949695 aggagtgaag 26949686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 34 - 339
Target Start/End: Complemental strand, 27214750 - 27214442
Alignment:
Q  34 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 133  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||  ||     
T  27214750 aatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgctt 27214651  T
Q  134 agaaagtgctgcaccatacc---tattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaag 230  Q
    || ||| ||| ||||||| |   | ||  || ||||||| | |||||||||||| ||  |||||||||| || ||||| || ||||  ||||||||| ||    
T  27214650 agcaagcgcttcaccataactgttgttgttcagatgtcgcaagtgagaaggttcaacgccatagaaaacaggtagaacaaggcgacctttttccttggag 27214551  T
Q  231 tagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgcttttga 330  Q
     | ||| |||| ||||||||||| || | |||||||||||||||||||||||||| ||||||||||||||| | |||||| |||||||||||  | |||     
T  27214550 caatgagtgatgtggacaagttcgtccaaacaaaatgaagaagtagcatagttctctgagaatacaataacagaaatcctcgagtcttcaattttcttgt 27214451  T
Q  331 ggagcgaag 339  Q
    |||||||||    
T  27214450 ggagcgaag 27214442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 34 - 339
Target Start/End: Original strand, 27234478 - 27234786
Alignment:
Q  34 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 133  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||  ||     
T  27234478 aatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgctt 27234577  T
Q  134 agaaagtgctgcaccatacc---tattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaag 230  Q
    || ||| ||| ||||||| |   | ||  || ||||||| | |||||||||||| ||  |||||||||| || ||||| || ||||  ||||||||| ||    
T  27234578 agcaagcgcttcaccataactgttgttgttcagatgtcgcaagtgagaaggttcaacgccatagaaaacaggtagaacaaggcgacctttttccttggag 27234677  T
Q  231 tagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgcttttga 330  Q
     | ||| |||| ||||||||||| || | |||||||||||||||||||||||||| ||||||||||||||| | |||||| |||||||||||  | |||     
T  27234678 caatgagtgatgtggacaagttcgtccaaacaaaatgaagaagtagcatagttctctgagaatacaataacagaaatcctcgagtcttcaattttcttgt 27234777  T
Q  331 ggagcgaag 339  Q
    |||||||||    
T  27234778 ggagcgaag 27234786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 30 - 339
Target Start/End: Complemental strand, 26848994 - 26848685
Alignment:
Q  30 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 129  Q
    |||||||| | |||||||||||| ||||| |||| ||||||| ||||||||||  |||| ||||||||| ||| |||||||||||| |||   ||||||     
T  26848994 ttgaaatggtggccagataagttagcagcatggttaagagctttcttccatttacgcaaacgctccatgctttccttgttattttgaaacacctcttcat 26848895  T
Q  130 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 229  Q
     || || ||||||| ||||||| ||| || |||||||||| || ||||||||||| |   |||||||||| |||| ||| |  | || |||||||||| |    
T  26848894 gcttagcaagtgcttcaccataactactattctgatgtcgcacatgagaaggttctatgccatagaaaacaggaataaccatgctacccttttccttgga 26848795  T
Q  230 gtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgcttttg 329  Q
    | | |||||||| ||||||||||| || | |||||| |||||||| ||||||||||  |||||||||| ||  | |||||| |||||||||||| | |||    
T  26848794 gcaatgaatgatgtggacaagttcgtccaaacaaaacgaagaagtggcatagttctcagagaatacaagaatggaaatcctcgagtcttcaatgttcttg 26848695  T
Q  330 aggagcgaag 339  Q
    ||||||||||    
T  26848694 aggagcgaag 26848685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 339
Target Start/End: Complemental strand, 25071993 - 25071684
Alignment:
Q  30 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 129  Q
    ||||||||||  ||||||||||| ||||||| || ||||||| |||||||| || ||||||||||||||| || |||||||||||| ||||  ||||||     
T  25071993 ttgaaatgatgtccagataagttagcagcttcgttaagagctttcttccatgtcagcaaccgctccatgtgttccttgttattttgaaacccctcttcat 25071894  T
Q  130 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 229  Q
     || || || || | ||||||| || | | || | | ||| || || ||||||||     ||||||||| ||| ||||| || |||||||||||||||||    
T  25071893 gcttagcaaatgattcaccataactgtcattcagttttcgcacctgcgaaggttcggtgccatagaaaattggtagaacaaggcgactcttttccttgaa 25071794  T
Q  230 gtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgcttttg 329  Q
    |||||||||||| ||||||||||| |||| |||||||||||||| ||||||||  || ||||| || ||||  ||||| || || ||||||||||| |||    
T  25071793 gtagtgaatgatgtggacaagttcgtctaaacaaaatgaagaagaagcatagtctttagagaagacgataatggcaattctcgaatcttcaatgctcttg 25071694  T
Q  330 aggagcgaag 339  Q
     |||||||||    
T  25071693 cggagcgaag 25071684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 283
Target Start/End: Complemental strand, 25580049 - 25579800
Alignment:
Q  34 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 133  Q
    |||||||||| || ||||| |||||||||  ||||||| |||||||||   |||| |||||||||||||||| ||||||||| ||||| ||||||  ||     
T  25580049 aatgatagccggacaagttagcagcttgggtaagagctatcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctcttcatgctt 25579950  T
Q  134 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagta 232  Q
    || ||| | || ||||||| ||   | |||||||||||| ||||| ||||||||||||||||||||| || |  || |  | |||||||  |||| || |    
T  25579949 agtaagatact-caccataactcccactctgatgtcgtatgtgagtaggttccacatcatagaaaacgggcaatactaagcaactctttgtcttgtagca 25579851  T
Q  233 gtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagtt 283  Q
    ||||||||| ||||||||||| || | ||||||||||||||  ||||||||    
T  25579850 gtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagtt 25579800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 283
Target Start/End: Complemental strand, 26143195 - 26142946
Alignment:
Q  34 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 133  Q
    |||||||||| || ||||| |||||||||  ||||||| |||||||||   |||| |||||||||||||||| ||||||||| ||||| ||||||  ||     
T  26143195 aatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctcttcatgctt 26143096  T
Q  134 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagta 232  Q
    || ||| |||| |||||||  |   | |||||| ||||| ||||| ||||||||||||||||||||| ||||  || |  | |||||||  |||| || |    
T  26143095 agtaagatgct-caccataaatcccactctgatttcgtatgtgagtaggttccacatcatagaaaacgggaaatactaagcaactctttgtcttgtagca 26142997  T
Q  233 gtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagtt 283  Q
    ||||||||| ||||||||||| || | ||||||||||||||  ||||||||    
T  26142996 gtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagtt 26142946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 339
Target Start/End: Complemental strand, 26636024 - 26635715
Alignment:
Q  30 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 129  Q
    |||||||| | |||||||||||| |||||||||| ||||||| ||||||||||| |||||| ||||||||||| |||| ||||||| |||   ||||||     
T  26636024 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccatgttttccttgctattttgaaactgatcttcat 26635925  T
Q  130 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 229  Q
     || || ||| ||| ||||||| || | | |  | | ||| || |||||||||||     |||||||||| |||| |||    | || |||||| ||| |    
T  26635924 gcttagcaagcgcttcaccataactgtcatttagttttcgcacatgagaaggttcggtgccatagaaaacaggaataaccttgctacccttttcattgga 26635825  T
Q  230 gtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgcttttg 329  Q
    | | |||||||| |||||||||||||| | ||||||  |||||| |||||| | ||| ||||| || ||||  |||||||| || ||||||||||| |||    
T  26635824 gcaatgaatgatgtggacaagttcatccaaacaaaacaaagaagaagcatattccttagagaaaacgataatggcaatcctcgactcttcaatgctcttg 26635725  T
Q  330 aggagcgaag 339  Q
    ||||||||||    
T  26635724 aggagcgaag 26635715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 339
Target Start/End: Complemental strand, 26741990 - 26741681
Alignment:
Q  30 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 129  Q
    |||||||| | |||||||||||| |||||||||| ||||||| ||||||||||| |||||| ||||||||||| |||| ||||||| |||   ||||||     
T  26741990 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccatgttttccttgctattttgaaactgatcttcat 26741891  T
Q  130 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 229  Q
     || || ||| ||| ||||||| || | | |  | | ||| || |||||||||||     |||||||||| |||| |||    | || |||||| ||| |    
T  26741890 gcttagcaagcgcttcaccataactgtcatttagttttcgcacatgagaaggttcggtgccatagaaaacaggaataaccttgctacccttttcattgga 26741791  T
Q  230 gtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgcttttg 329  Q
    | | |||||||| |||||||||||||| | ||||||  |||||| |||||| | ||| ||||| || ||||  |||||||| || ||||||||||| |||    
T  26741790 gcaatgaatgatgtggacaagttcatccaaacaaaacaaagaagaagcatattccttagagaaaacgataatggcaatcctcgactcttcaatgctcttg 26741691  T
Q  330 aggagcgaag 339  Q
    ||||||||||    
T  26741690 aggagcgaag 26741681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 339
Target Start/End: Complemental strand, 26975386 - 26975077
Alignment:
Q  30 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 129  Q
    |||||||| | |||||||||||| |||||||||| ||||||| ||||||||||  |||||||||||| |||||  || |||||||| ||||  ||||||     
T  26975386 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttaagcaaccgctccaagttttcatttttattttgaaacccctcttcat 26975287  T
Q  130 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 229  Q
     || || |||| || ||||||| || | | || | |  || || |||||||||||     |||||||||| |||| ||| |  | || |||||| ||| |    
T  26975286 gcttagcaagtacttcaccataactgtcattcagtttacgcacatgagaaggttctgtgccatagaaaacaggaataactatgctacccttttcattgga 26975187  T
Q  230 gtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgcttttg 329  Q
      | |||||||| ||||||||||| || | |||||||||||||| ||||||||  || ||||| || ||||  | |||||| |||||||||||||| |||    
T  26975186 acaatgaatgatgtggacaagttcgtccaaacaaaatgaagaagaagcatagtctttagagaagacgataatggtaatcctcgagtcttcaatgctcttg 26975087  T
Q  330 aggagcgaag 339  Q
    ||||||||||    
T  26975086 aggagcgaag 26975077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 234 - 325
Target Start/End: Original strand, 27665174 - 27665265
Alignment:
Q  234 tgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgct 325  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||  |||||||| || |||||||||||    
T  27665174 tgaatgatgtggacaagttcatctaaacaaaatgaagaagtagcatagttcttagagaatataataatggcaatcctcgattcttcaatgct 27665265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 34 - 283
Target Start/End: Complemental strand, 25538870 - 25538621
Alignment:
Q  34 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 133  Q
    |||||||||| || ||||| |||||||||  ||||||| |||||||||   |||| ||||||||||||||||  |||||||| ||||| ||||||  ||     
T  25538870 aatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgtttttctcattattttgaaacctctcttcatgctt 25538771  T
Q  134 ag-aaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagta 232  Q
    || ||| |||| ||||||| ||   | ||||||||||||  |||| ||||||||||||||||||||| || |  || |  | |||||||  |||| || |    
T  25538770 agtaaaatgct-caccataactcccactctgatgtcgtaactgagtaggttccacatcatagaaaacgggcaatactaagcaactctttgtcttgtagca 25538672  T
Q  233 gtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagtt 283  Q
    ||||||||| ||||||||||| || | ||||||||||||||  ||||||||    
T  25538671 gtgaatgatctggacaagttcgtccaaacaaaatgaagaagatgcatagtt 25538621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 280
Target Start/End: Complemental strand, 28181316 - 28181198
Alignment:
Q  162 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 261  Q
    |||||||| |||||||||||||||||||||||||||| ||| | ||| ||||| |   ||||||||||| |||||||||| ||||||||||| || |  |    
T  28181316 tgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaagcagtgaatgatgtggacaagttcgtccaagc 28181217  T
Q  262 aaaatgaagaagtagcata 280  Q
    |||||||||||| ||||||    
T  28181216 aaaatgaagaagaagcata 28181198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 26959500 - 26959415
Alignment:
Q  30 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttg 115  Q
    |||||||| | |||||||||||| |||||||||| ||||||| ||||||||||| |||||||||||||||||| |||| |||||||    
T  26959500 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccgctccatgttttccttgctattttg 26959415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 283
Target Start/End: Original strand, 27337936 - 27338171
Alignment:
Q  48 aagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaag-tgctgca 146  Q
    ||||| |||||||||  ||||||  |||||||||||| ||||| ||||||||||| |||||||||||||||| | ||||||  || || ||| |||| ||    
T  27337936 aagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgcttagtaagatgct-ca 27338034  T
Q  147 ccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatgga 246  Q
    ||||| ||   |||||||||||||||||||| ||| ||| || |||||||||| || | |||   || || | ||  |||| || |||||||||| ||||    
T  27338035 ccataactcccagtctgatgtcgtacgtgagtaggatccgcaccatagaaaacaggcaaaaccgaacaaccccttgtcttgtagcagtgaatgatgtgga 27338134  T
Q  247 caagttcatctagacaaaatgaagaagtagcatagtt 283  Q
    ||||||| || |  |||||||||||||  ||||||||    
T  27338135 caagttcgtccaagcaaaatgaagaagatgcatagtt 27338171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 283
Target Start/End: Original strand, 27398676 - 27398911
Alignment:
Q  48 aagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaag-tgctgca 146  Q
    ||||| |||||||||  ||||||  |||||||||||| ||||| ||||||||||| |||||||||||||||| | ||||||  || || ||| |||| ||    
T  27398676 aagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgcttagtaagatgct-ca 27398774  T
Q  147 ccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatgga 246  Q
    ||||| ||   |||||||||||||||||||| ||| ||| || |||||||||| || | |||   || || | ||  |||| || |||||||||| ||||    
T  27398775 ccataactcccagtctgatgtcgtacgtgagtaggatccgcaccatagaaaacaggcaaaaccgaacaaccccttgtcttgtagcagtgaatgatgtgga 27398874  T
Q  247 caagttcatctagacaaaatgaagaagtagcatagtt 283  Q
    ||||||| || |  |||||||||||||  ||||||||    
T  27398875 caagttcgtccaagcaaaatgaagaagatgcatagtt 27398911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 34 - 283
Target Start/End: Complemental strand, 26056256 - 26056007
Alignment:
Q  34 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 133  Q
    |||||||||| || ||||| ||||||||   ||||||  |||||||||   |||| |||||||||||||||| ||||||||||||||  |||| |  ||     
T  26056256 aatgatagccggacaagttagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacccctctttatgctt 26056157  T
Q  134 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagta 232  Q
    || ||| |||| ||||||| ||   | |||||||||||| ||||| ||||||||||||||||||||| || |  || |  | |||||||   ||| || |    
T  26056156 agtaagatgct-caccataactcccactctgatgtcgtatgtgagtaggttccacatcatagaaaacgggcaatactaagcaactctttgtgttgtagca 26056058  T
Q  233 gtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagtt 283  Q
    ||||||||| ||||||||||| || | ||||||||||||||  ||||||||    
T  26056057 gtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagtt 26056007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 34 - 283
Target Start/End: Complemental strand, 26076226 - 26075977
Alignment:
Q  34 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 133  Q
    |||||||||| || ||||| ||||||||   ||||||  |||||||||   |||| |||||||||||||||| ||||||||||||||  |||| |  ||     
T  26076226 aatgatagccggacaagttagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacccctctttatgctt 26076127  T
Q  134 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagta 232  Q
    || ||| |||| ||||||| ||   | |||||||||||| ||||| ||||||||||||||||||||| || |  || |  | |||||||   ||| || |    
T  26076126 agtaagatgct-caccataactcccactctgatgtcgtatgtgagtaggttccacatcatagaaaacgggcaatactaagcaactctttgtgttgtagca 26076028  T
Q  233 gtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagtt 283  Q
    ||||||||| ||||||||||| || | ||||||||||||||  ||||||||    
T  26076027 gtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagtt 26075977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 280
Target Start/End: Complemental strand, 28185700 - 28185450
Alignment:
Q  30 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 129  Q
    |||||||| | |||||| ||||| |||| |||   ||||||  |||||||||||||||||| ||||||| | | |||||||||||||||| | | |  |     
T  28185700 ttgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgctatccttgttattttggaacttctttatat 28185601  T
Q  130 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 229  Q
      |||   ||||||  |||||| ||    || |||||||| |||||||||||||||||||||||||||| ||| | ||| ||||| |   ||||||||||    
T  28185600 gatcatccagtgctttaccataactgcccgtgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaa 28185501  T
Q  230 gtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcata 280  Q
    | ||| |||||| ||||||||||| || |  ||||||||||||| ||||||    
T  28185500 gcagttaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcata 28185450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 280
Target Start/End: Original strand, 28297566 - 28297816
Alignment:
Q  30 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 129  Q
    |||||||| | |||||| ||||| |||| |||   ||||||  |||||||||||||||||| ||||||||| |||||||||||||||||| | |||  |     
T  28297566 ttgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgttattcttgttattttggaacttctctatat 28297665  T
Q  130 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 229  Q
      |||   ||||||  | |||| ||   |   |||||||| || |||||||||||||||||||| ||||  || | ||| ||||| ||  ||||||||||    
T  28297666 gatcatccagtgctttagcataacttccatgttgatgtcgcacatgagaaggttccacatcataaaaaatcggcaaaactagacggctactttccttgaa 28297765  T
Q  230 gtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcata 280  Q
    | |||||||||| ||||||||||| || |  ||||||||||||| ||||||    
T  28297766 gcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcata 28297816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 280
Target Start/End: Complemental strand, 28514507 - 28514257
Alignment:
Q  30 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 129  Q
    |||||||| | |||||| ||||| |||| |||   ||||||  |||||||||||||||||| ||||||||| |||||||||||||||||| | |||  |     
T  28514507 ttgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgttattcttgttattttggaacttctctatat 28514408  T
Q  130 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 229  Q
      |||   ||||||  | |||| ||   |   |||||||| || |||||||||||||||||||| ||||  || | ||| ||||| ||  ||||||||||    
T  28514407 gatcatccagtgctttagcataacttccatgttgatgtcgcacatgagaaggttccacatcataaaaaatcggcaaaactagacggctactttccttgaa 28514308  T
Q  230 gtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcata 280  Q
    | |||||||||| ||||||||||| || |  ||||||||||||| ||||||    
T  28514307 gcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcata 28514257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 162 - 280
Target Start/End: Complemental strand, 28227152 - 28227034
Alignment:
Q  162 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 261  Q
    |||||||| || ||||||||||||||||||||||||| ||| | ||| || || |  |||||||||||| | |||||||| ||||||||||| || |  |    
T  28227152 tgatgtcgcacatgagaaggttccacatcatagaaaattggcaaaacaaggcgccgattttccttgaagcaatgaatgatgtggacaagttcgtccaagc 28227053  T
Q  262 aaaatgaagaagtagcata 280  Q
    |||||||||||| ||||||    
T  28227052 aaaatgaagaagaagcata 28227034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 292
Target Start/End: Complemental strand, 2184464 - 2184360
Alignment:
Q  188 atcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttcttt 287  Q
    ||||||||||||||| ||||| || || | ||||  |||| ||||  ||||||| ||||||||||| || | |||||||||||||| |||||||||||||    
T  2184464 atcatagaaaactggtagaaccaggcgtccctttgacttggagtaacgaatgatgtggacaagttcgtccaaacaaaatgaagaagaagcatagttcttt 2184365  T
Q  288 gagaa 292  Q
    |||||    
T  2184364 gagaa 2184360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 73 - 280
Target Start/End: Complemental strand, 28243095 - 28242888
Alignment:
Q  73 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtac 172  Q
    |||||||||||||||||| ||||||||| | | || ||||||||||| | ||   |  |||||  ||||||  |||||| ||   | |||||||||  ||    
T  28243095 tcttccatttctgcaacctctccatgttatccgtgctattttggaacttctcaatatgctcagccagtgctttaccataactgccaatctgatgtctcac 28242996  T
Q  173 gtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaa 272  Q
    || ||||||||||||||||||||||| ||| | ||| || || |  |||| |||| || |||||||||| ||||||||||| || |  ||||||||||||    
T  28242995 gttagaaggttccacatcatagaaaattggcaaaactaggcgtccatttttcttgcagcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaa 28242896  T
Q  273 gtagcata 280  Q
    | ||||||    
T  28242895 gaagcata 28242888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 280
Target Start/End: Complemental strand, 28234765 - 28234648
Alignment:
Q  162 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 261  Q
    |||||||| |||||||||||||||||||||||||||| ||| | ||| || || || ||||||| |||| | | |||||| ||||||||||| || |  |    
T  28234765 tgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactaggcgtctattttcctcgaagca-taaatgatgtggacaagttcgtccaagc 28234667  T
Q  262 aaaatgaagaagtagcata 280  Q
    |||||||||||| ||||||    
T  28234666 aaaatgaagaagaagcata 28234648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 280
Target Start/End: Complemental strand, 28325683 - 28325565
Alignment:
Q  162 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 261  Q
    |||||||| |||||||||||||||||||| |||||||||||   ||| || || |  ||||| |||||| ||||||| || |||||||||||||| |  |    
T  28325683 tgatgtcgcacgtgagaaggttccacatcgtagaaaactggctaaactaggcgcccattttctttgaagcagtgaataatgtggacaagttcatccaagc 28325584  T
Q  262 aaaatgaagaagtagcata 280  Q
    |||| ||||||| ||||||    
T  28325583 aaaaggaagaagaagcata 28325565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 27677616 - 27677720
Alignment:
Q  179 aggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagca 278  Q
    |||||||||| || ||||||| || |||||||| |||| ||||  |||| || |||||||||| ||||||||||| || | ||||||||||||||  |||    
T  27677616 aggttccacagcaaagaaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggca 27677715  T
Q  279 tagtt 283  Q
    |||||    
T  27677716 tagtt 27677720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 283
Target Start/End: Complemental strand, 27679131 - 27679027
Alignment:
Q  179 aggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagca 278  Q
    |||||||||| || ||||||| || |||||||| |||| ||||  |||| || |||||||||| ||||||||||| || | ||||||||||||||  |||    
T  27679131 aggttccacaccaaagaaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggca 27679032  T
Q  279 tagtt 283  Q
    |||||    
T  27679031 tagtt 27679027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 292
Target Start/End: Original strand, 28098297 - 28098484
Alignment:
Q  105 ttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaa 204  Q
    ||||||||||||||||| ||||||  || ||  | |||| ||||||| ||    ||||||||||| ||||||||||||||||| ||| | ||||  ||||    
T  28098297 ttgttattttggaacctctcttcatgcttagctaatgcttcaccataactccccgtctgatgtcgcacgtgagaaggttccacgtcacaaaaaataggaa 28098396  T
Q  205 gaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaa 292  Q
     |||||  | || |||||| | | |   ||||||||| |||||||||||||| | ||||||  |||||| |||||||||||| |||||    
T  28098397 aaacgaagcaacccttttcttcgtaacggtgaatgatgtggacaagttcatccaaacaaaacaaagaagaagcatagttcttagagaa 28098484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 339
Target Start/End: Complemental strand, 26959296 - 26959190
Alignment:
Q  234 tgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgct-tttgagg 332  Q
    |||||||| |||||||||||||| | | |||| ||||||| |||||| | ||| ||||| || ||||  |||||||| |||||||||||||| ||||||     
T  26959296 tgaatgatgtggacaagttcatccaaataaaacgaagaagaagcatattccttagagaaaacgataatggcaatcctcgagtcttcaatgctctttgaga 26959197  T
Q  333 agcgaag 339  Q
    |||||||    
T  26959196 agcgaag 26959190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 2185027 - 2184970
Alignment:
Q  235 gaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaa 292  Q
    ||||||||||||||||||| || | |||||||||||||| |||||||| |||||||||    
T  2185027 gaatgatatggacaagttcgtccaaacaaaatgaagaagaagcatagtcctttgagaa 2184970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 283
Target Start/End: Complemental strand, 26049047 - 26048926
Alignment:
Q  162 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 261  Q
    |||||||||| ||||| ||||||||||||||| ||||| || |  || |  | |||||||  |||| || |||||||||| ||||||||||| || | ||    
T  26049047 tgatgtcgtatgtgagtaggttccacatcataaaaaacgggcaatactaagcaactctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaac 26048948  T
Q  262 aaaatgaagaagtagcatagtt 283  Q
    ||||||||||||  ||||||||    
T  26048947 aaaatgaagaagatgcatagtt 26048926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 283
Target Start/End: Complemental strand, 26070216 - 26070095
Alignment:
Q  162 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 261  Q
    |||||||||| ||||| ||||||||||||||| ||||| || |  || |  | |||||||  |||| || |||||||||| ||||||||||| || | ||    
T  26070216 tgatgtcgtatgtgagtaggttccacatcataaaaaacgggcaatactaagcaactctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaac 26070117  T
Q  262 aaaatgaagaagtagcatagtt 283  Q
    ||||||||||||  ||||||||    
T  26070116 aaaatgaagaagatgcatagtt 26070095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 26617441 - 26617359
Alignment:
Q  242 atggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgc 324  Q
    ||||||||||||||||| |||||||||||||| ||||||||  || ||||| |||| ||  ||||| || |||| ||||||||    
T  26617441 atggacaagttcatctaaacaaaatgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgc 26617359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 272
Target Start/End: Complemental strand, 26623178 - 26623068
Alignment:
Q  162 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 261  Q
    ||||| |||| ||||| ||| |||||  ||||||| || || | ||||||||||| ||||   ||| || |||||||||| |||||||||||||| | ||    
T  26623178 tgatgccgtatgtgagtaggatccacgccatagaagacgggcaaaacgagacgaccctttgttttgtagcagtgaatgatgtggacaagttcatccaaac 26623079  T
Q  262 aaaatgaagaa 272  Q
    |||||||||||    
T  26623078 aaaatgaagaa 26623068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 283
Target Start/End: Complemental strand, 26656319 - 26656070
Alignment:
Q  34 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 133  Q
    |||| |||||||| ||||| ||||||| |   |||||  ||||||||| || ||||| || |||||||| |||||||||||||||| | | ||||  ||     
T  26656319 aatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttcttttcatgctt 26656220  T
Q  134 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagta 232  Q
    || ||| |||| |||| || ||   |||||||||||||| ||||| ||| |||||| |||||||||| || | |||   || || ||||  |||  || |    
T  26656219 agtaagatgct-caccgtaacttccagtctgatgtcgtatgtgagtaggatccacaccatagaaaacaggcaaaaccgaacaaccctttgtcttatagca 26656121  T
Q  233 gtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagtt 283  Q
     |||||||| ||||||||||| || | ||||||||||||||  ||||||||    
T  26656120 atgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagtt 26656070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 26723369 - 26723287
Alignment:
Q  242 atggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgc 324  Q
    ||||||||||||||||| |||||||||||||| ||||||||  || ||||| |||| ||  ||||| || |||| ||||||||    
T  26723369 atggacaagttcatctaaacaaaatgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgc 26723287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 272
Target Start/End: Complemental strand, 26729156 - 26729046
Alignment:
Q  162 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 261  Q
    ||||| |||| ||||| ||| |||||  ||||||| || || | ||||||||||| ||||   ||| || |||||||||| |||||||||||||| | ||    
T  26729156 tgatgccgtatgtgagtaggatccacgccatagaagacgggcaaaacgagacgaccctttgttttgtagcagtgaatgatgtggacaagttcatccaaac 26729057  T
Q  262 aaaatgaagaa 272  Q
    |||||||||||    
T  26729056 aaaatgaagaa 26729046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 283
Target Start/End: Complemental strand, 26762290 - 26762041
Alignment:
Q  34 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 133  Q
    |||| |||||||| ||||| ||||||| |   |||||  ||||||||| || ||||| || |||||||| |||||||||||||||| | | ||||  ||     
T  26762290 aatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttcttttcatgctt 26762191  T
Q  134 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagta 232  Q
    || ||| |||| |||| || ||   |||||||||||||| ||||| ||| |||||| |||||||||| || | |||   || || ||||  |||  || |    
T  26762190 agtaagatgct-caccgtaacttccagtctgatgtcgtatgtgagtaggatccacaccatagaaaacaggcaaaaccgaacaaccctttgtcttatagca 26762092  T
Q  233 gtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagtt 283  Q
     |||||||| ||||||||||| || | ||||||||||||||  ||||||||    
T  26762091 atgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagtt 26762041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 283
Target Start/End: Complemental strand, 26824043 - 26823921
Alignment:
Q  161 ctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctaga 260  Q
    ||||||||||| || |  ||| |||||| |||||||||| || | |||||| || | |||||||||| ||  | ||||||| ||||||||||| || | |    
T  26824043 ctgatgtcgtatgtcaccaggatccacaccatagaaaacaggcaaaacgaggcgccccttttccttgtagacgcgaatgatgtggacaagttcgtccaaa 26823944  T
Q  261 caaaatgaagaagtagcatagtt 283  Q
    |||||||||||||  ||||||||    
T  26823943 caaaatgaagaagaggcatagtt 26823921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 26937440 - 26937370
Alignment:
Q  30 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtt 100  Q
    |||||||| | |||||| ||||| || ||||||| ||||||| ||||||||||| |||||| |||||||||    
T  26937440 ttgaaatggtggccagacaagtttgccgcttggttaagagctatcttccatttccgcaacctctccatgtt 26937370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 28234854 - 28234808
Alignment:
Q  73 tcttccatttctgcaaccgctccatgtttttcttgttattttggaac 119  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||    
T  28234854 tcttccatttctgcaacctctccatgttatccttgttattttggaac 28234808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 296
Target Start/End: Complemental strand, 26937318 - 26937162
Alignment:
Q  140 tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatg 239  Q
    |||||||||||| ||   ||| || ||||| ||||||||||| ||||| ||||||||||  || | ||  ||| |||  |||  ||||||| ||| || |    
T  26937318 tgctgcaccataactcccagtttggtgtcgaacgtgagaaggatccacttcatagaaaataggcaaaattagatgaccttttgtcttgaagcagtcaacg 26937219  T
Q  240 atatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaataca 296  Q
    || ||||||||||| || | ||||||||||||||| ||||||||  | |||||||||    
T  26937218 atgtggacaagttcgtccaaacaaaatgaagaagtggcatagttgatagagaataca 26937162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 283
Target Start/End: Original strand, 27718285 - 27718485
Alignment:
Q  83 ctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggt 182  Q
    |||||||| ||||||||| ||||| | |||||| ||||| | ||||  |||||  | |||| ||||||| |||    |||||||||| |||| || ||||    
T  27718285 ctgcaacctctccatgttattcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcacgttagtaggt 27718384  T
Q  183 tccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagt 282  Q
    |||||  |  ||||||| || | |||||| |||| ||||  |||| || ||||||| || ||||||||||| || | |||||| |||||||  |||||||    
T  27718385 tccacgccgaagaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaagaggcatagt 27718484  T
Q  283 t 283  Q
    |    
T  27718485 t 27718485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 24715884 - 24715829
Alignment:
Q  65 aagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacc 120  Q
    ||||||||||||| ||||| ||||||| ||||||| || |||||||||||| ||||    
T  24715884 aagagctgtcttctatttcagcaaccggtccatgtgttccttgttattttgaaacc 24715829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 292
Target Start/End: Original strand, 26341974 - 26342049
Alignment:
Q  217 tcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaa 292  Q
    ||||| |||||||| | |||||||| ||||||||||| || | |||||| ||||||| |||||||||  |||||||    
T  26341974 tctttgccttgaagcaatgaatgatgtggacaagttcgtccaaacaaaacgaagaagaagcatagttgattgagaa 26342049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 25482072 - 25481986
Alignment:
Q  34 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacc 120  Q
    |||||||||| || || || ||||||||   ||||||  |||||||||   |||| |||||||||||||||| ||||||||||||||    
T  25482072 aatgatagccggacaaattagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacc 25481986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 273
Target Start/End: Original strand, 27706420 - 27706498
Alignment:
Q  195 aaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaag 273  Q
    ||||| || |||||||| |||| ||||  |||| || |||||||||| ||||||||||| || | ||||||||||||||    
T  27706420 aaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaag 27706498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 29826233 - 29826175
Alignment:
Q  158 agtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgac 216  Q
    |||||||||||| || |||||||| ||||||||||||||||  || | |||||||||||    
T  29826233 agtctgatgtcgcacatgagaaggatccacatcatagaaaataggcaaaacgagacgac 29826175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 28150083 - 28150018
Alignment:
Q  218 cttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagtt 283  Q
    |||| |||||||| ||||||| || ||||||||||| || | |||||||||||||| || ||||||    
T  28150083 ctttgccttgaagcagtgaataatgtggacaagttcgtccaaacaaaatgaagaagaagtatagtt 28150018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 25481891 - 25481823
Alignment:
Q  215 actcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagtt 283  Q
    |||||||  |||| || |||||||||| ||||||||||| || | ||||||||||||||  ||||||||    
T  25481891 actctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagtt 25481823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 283
Target Start/End: Original strand, 27610908 - 27611108
Alignment:
Q  83 ctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggt 182  Q
    |||||||| ||||||||| ||||| | |||||| ||||| | ||||  |||||  | |||| ||||||| |||    |||||||||| || | || ||||    
T  27610908 ctgcaacctctccatgttattcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcactttagtaggt 27611007  T
Q  183 tccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagt 282  Q
    |||||  |  ||||||| || | |||||| |||| ||||  |||| || ||||||| || ||||||||||| || | |||||| |||||||  |||||||    
T  27611008 tccacgccgaagaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaagaggcatagt 27611107  T
Q  283 t 283  Q
    |    
T  27611108 t 27611108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 27664999 - 27665055
Alignment:
Q  59 ttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttg 115  Q
    ||||| |||||||  |||||||||| |||||||||||||||||| | ||| ||||||    
T  27664999 ttggtgaagagcttccttccatttcagcaaccgctccatgttttccatgtcattttg 27665055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 28181405 - 28181353
Alignment:
Q  73 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttct 125  Q
    ||||||||||||||||||  |||||| | | |||||||||||||||||| |||    
T  28181405 tcttccatttctgcaacctatccatgctatgcttgttattttggaacctctct 28181353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 28227241 - 28227189
Alignment:
Q  73 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttct 125  Q
    ||||||||||||||||||  |||||| | | |||||||||||||||||| |||    
T  28227241 tcttccatttctgcaacctatccatgctatgcttgttattttggaacctctct 28227189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 30 - 337
Target Start/End: Original strand, 17993537 - 17993844
Alignment:
Q  30 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 129  Q
    |||||||| | |||||||||||| |||||||||| ||||||| |||||||||||  ||||||||||||||||| |||| ||||||| || |  ||||||     
T  17993537 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcaacaaccgctccatgttttccttgctattttgaaaaccctcttcat 17993636  T
Q  130 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacg-actcttttccttga 228  Q
     || || ||||||| ||||||| |||| | |||||||||| || |||||||||||     |||||||||| ||||  ||  | || || |||||| |||     
T  17993637 gcttagcaagtgcttcaccataactatcattctgatgtcgcacctgagaaggttctgtgccatagaaaacaggaattac-cgtcgtacccttttcattgg 17993735  T
Q  229 agtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaatgctttt 328  Q
    || | |||||||| ||||||||||| |||| |||||||||||||| |||||||| ||||||||| || ||||  ||||| || |||||||||||||| ||    
T  17993736 agcattgaatgatgtggacaagttcgtctaaacaaaatgaagaagaagcatagtcctttgagaagacgataatcgcaattcttgagtcttcaatgctctt 17993835  T
Q  329 gaggagcga 337  Q
    |||||||||    
T  17993836 gaggagcga 17993844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 3279897 - 3279857
Alignment:
Q  158 agtctgatgtcgtacgtgagaaggttccacatcatagaaaa 198  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  3279897 agtctgatgtcgcacgtgggaaggttccacatcatagaaaa 3279857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 280
Target Start/End: Complemental strand, 34927 - 34809
Alignment:
Q  162 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 261  Q
    |||||||| |||||||||||||||||||||||||||| ||| | ||| ||||| |   ||||||||||| |||||||||| ||||||||||| || |  |    
T  34927 tgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaagcagtgaatgatgtggacaagttcgtccaagc 34828  T
Q  262 aaaatgaagaagtagcata 280  Q
    |||||||||||| ||||||    
T  34827 aaaatgaagaagaagcata 34809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 162 - 280
Target Start/End: Complemental strand, 27650 - 27532
Alignment:
Q  162 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 261  Q
    |||||||| || ||||||||||||||||||||||||| ||| | ||| || || |  |||||||||||| | |||||||| ||||||||||| || |  |    
T  27650 tgatgtcgcacatgagaaggttccacatcatagaaaattggcaaaacaaggcgccgattttccttgaagcaatgaatgatgtggacaagttcgtccaagc 27551  T
Q  262 aaaatgaagaagtagcata 280  Q
    |||||||||||| ||||||    
T  27550 aaaatgaagaagaagcata 27532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 73 - 280
Target Start/End: Complemental strand, 43257 - 43050
Alignment:
Q  73 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtac 172  Q
    |||||||||||||||||| ||||||||| | | || ||||||||||| | ||   |  |||||  ||||||  |||||| ||   | |||||||||  ||    
T  43257 tcttccatttctgcaacctctccatgttatccgtgctattttggaacttctcaatatgctcagccagtgctttaccataactgccaatctgatgtctcac 43158  T
Q  173 gtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaa 272  Q
    || ||||||||||||||||||||||| ||| | ||| || || |  |||| |||| || |||||||||| ||||||||||| || |  ||||||||||||    
T  43157 gttagaaggttccacatcatagaaaattggcaaaactaggcgtccatttttcttgcagcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaa 43058  T
Q  273 gtagcata 280  Q
    | ||||||    
T  43057 gaagcata 43050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 280
Target Start/End: Complemental strand, 116998 - 116880
Alignment:
Q  162 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 261  Q
    |||||||| |||||||||||||||||||| |||||||||||   ||| || || |  ||||| |||||| ||||||| || |||||||||||||| |  |    
T  116998 tgatgtcgcacgtgagaaggttccacatcgtagaaaactggctaaactaggcgcccattttctttgaagcagtgaataatgtggacaagttcatccaagc 116899  T
Q  262 aaaatgaagaagtagcata 280  Q
    |||| ||||||| ||||||    
T  116898 aaaaggaagaagaagcata 116880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 35016 - 34970
Alignment:
Q  73 tcttccatttctgcaaccgctccatgtttttcttgttattttggaac 119  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||    
T  35016 tcttccatttctgcaacctctccatgttatccttgttattttggaac 34970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 27739 - 27687
Alignment:
Q  73 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttct 125  Q
    ||||||||||||||||||  |||||| | | |||||||||||||||||| |||    
T  27739 tcttccatttctgcaacctatccatgctatgcttgttattttggaacctctct 27687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 282
Target Start/End: Original strand, 5090899 - 5091059
Alignment:
Q  122 ttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttt 221  Q
    |||||||  ||||| ||||||| ||||||| ||   |||||||| ||| || ||||||||||||||| |||||||||  || | ||| || | ||  |||    
T  5090899 ttcttcatgctcagcaagtgcttcaccataacttccagtctgatatcgcacatgagaaggttccacaccatagaaaataggcaaaaccaggcaaccattt 5090998  T
Q  222 tccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaagtagcatagt 282  Q
    |||||| || ||||||| ||||||||||||||||||| |||||| ||||||| ||||||||    
T  5090999 tccttggagcagtgaataatatggacaagttcatctaaacaaaacgaagaagaagcatagt 5091059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 283
Target Start/End: Original strand, 18655449 - 18655570
Alignment:
Q  162 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 261  Q
    |||||||||| ||||| ||| |||||  |||||||||| |||| ||||||||||| ||||  |||| || ||||||||||  |||||||||| || | ||    
T  18655449 tgatgtcgtatgtgagtaggatccacgccatagaaaacaggaaaaacgagacgaccctttgtcttgtagcagtgaatgatgcggacaagttcgtccaaac 18655548  T
Q  262 aaaatgaagaagtagcatagtt 283  Q
    ||||||||||||  ||||||||    
T  18655549 aaaatgaagaagaggcatagtt 18655570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 283
Target Start/End: Original strand, 18679539 - 18679660
Alignment:
Q  162 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 261  Q
    ||||||| || ||||| ||| |||||  |||||||||| || | ||| ||||||| ||||  |||| || |||||||||| ||||||||||| || | ||    
T  18679539 tgatgtcatatgtgagtaggatccacgacatagaaaacaggcaaaacaagacgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaac 18679638  T
Q  262 aaaatgaagaagtagcatagtt 283  Q
    ||||||||||||  ||||||||    
T  18679639 aaaatgaagaagaggcatagtt 18679660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 18699243 - 18699328
Alignment:
Q  33 aaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaa 118  Q
    ||||| ||||| || ||||| ||||||| |   ||||||  ||||||||  |||||||||||||||||||||||||||||||||||    
T  18699243 aaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttttcttgttattttggaa 18699328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 18655361 - 18655405
Alignment:
Q  74 cttccatttctgcaaccgctccatgtttttcttgttattttggaa 118  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  18655361 cttccattgatgcaaccgctccatgtttttcttgttattttggaa 18655405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 18723969 - 18724013
Alignment:
Q  74 cttccatttctgcaaccgctccatgtttttcttgttattttggaa 118  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  18723969 cttccattgatgcaaccgctccatgtttttcttgttattttggaa 18724013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 18731388 - 18731432
Alignment:
Q  74 cttccatttctgcaaccgctccatgtttttcttgttattttggaa 118  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  18731388 cttccattgatgcaaccgctccatgtttttcttgttattttggaa 18731432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 18679410 - 18679495
Alignment:
Q  33 aaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaa 118  Q
    ||||| ||||| || ||||| ||||||| |   ||||||  ||||||||  |||||||||||||||||||| ||||||||||||||    
T  18679410 aaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttttattgttattttggaa 18679495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 283
Target Start/End: Original strand, 18699372 - 18699493
Alignment:
Q  162 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 261  Q
    |||||||||| ||||| ||| || ||  |||||||||| || | |||||||||||  |||  |||| || |||||||||| || |||||||| || | ||    
T  18699372 tgatgtcgtatgtgagtaggatctacgccatagaaaacaggcaaaacgagacgaccttttgtcttgtagcagtgaatgatgtgaacaagttcgtccaaac 18699471  T
Q  262 aaaatgaagaagtagcatagtt 283  Q
    ||||||||||||  ||||||||    
T  18699472 aaaatgaagaagaggcatagtt 18699493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 283
Target Start/End: Original strand, 18731476 - 18731597
Alignment:
Q  162 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagac 261  Q
    |||||||||| ||||  ||| |||||  |||||||||| || | ||| ||||||| ||||  |||| || |||| ||||| ||||||||||| || | ||    
T  18731476 tgatgtcgtatgtgactaggatccacgccatagaaaacaggcaaaacaagacgaccctttgtcttgtagcagtgcatgatgtggacaagttcgtccaaac 18731575  T
Q  262 aaaatgaagaagtagcatagtt 283  Q
    ||||||||||||  ||||||||    
T  18731576 aaaatgaagaagaggcatagtt 18731597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 65 - 283
Target Start/End: Original strand, 58170 - 58388
Alignment:
Q  65 aagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctga 164  Q
    |||||||||||||||||||||||||| ||| ||| | | |||| ||||||||||||| ||   |  ||| | |||||||  |||||| ||   |   |||    
T  58170 aagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgctcggcaagtgctttaccataacttccatcttga 58269  T
Q  165 tgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaa 264  Q
    ||||| ||||||||||||||||| |||||||||| ||| | ||| || || |  | ||||| |||| |||||||||| ||||||||||| |  |  ||||    
T  58270 tgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattcctcgaagcagtgaatgatgtggacaagttcgttcaagcaaa 58369  T
Q  265 atgaagaagtagcatagtt 283  Q
    ||||||||| |||||||||    
T  58370 atgaagaagaagcatagtt 58388  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 283
Target Start/End: Original strand, 268241 - 268450
Alignment:
Q  74 cttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacg 173  Q
    ||||||||  |||||||||||||||||||||||| |||||||||| || |||||   || ||  ||   | ||||||| ||   | | |||||||||| |    
T  268241 cttccattgatgcaaccgctccatgtttttcttgctattttggaaactctcttcgtgcttagtgagatgttcaccataactcccactttgatgtcgtatg 268340  T
Q  174 tgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaag 273  Q
    |||| ||| |||||  ||||||| || || | || |||||||| ||||| |||| || |||||||||| ||||||||||| || | ||||||||||||||    
T  268341 tgagtaggatccacgccatagaagacgggcaaaatgagacgaccctttttcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaag 268440  T
Q  274 tagcatagtt 283  Q
      ||||||||    
T  268441 aggcatagtt 268450  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 28127523 - 28127610
Alignment:
Q  34 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacct 121  Q
    |||| ||||| || ||||| |||||||||   |||||| |||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  28127523 aatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacct 28127610  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 28164207 - 28164294
Alignment:
Q  34 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacct 121  Q
    |||| ||||| || ||||| |||||||||   |||||| |||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  28164207 aatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacct 28164294  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 283
Target Start/End: Original strand, 29273667 - 29273876
Alignment:
Q  74 cttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacg 173  Q
    ||||||||  |||||||| ||||||||||||||| |||||||||| || |||||  ||| ||  ||   | ||||||| ||   | | |||||||||| |    
T  29273667 cttccattgatgcaaccgatccatgtttttcttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatg 29273766  T
Q  174 tgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaag 273  Q
    |||| ||| |||||  ||||||| || || | || |||||||| ||||  |||| || |||||||||| ||||||||||| || | ||||||||||||||    
T  29273767 tgagtaggatccacgccatagaagacaggcaaaatgagacgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaag 29273866  T
Q  274 tagcatagtt 283  Q
      ||||||||    
T  29273867 aggcatagtt 29273876  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 322
Target Start/End: Complemental strand, 31903970 - 31903893
Alignment:
Q  245 gacaagttcatctagacaaaatgaagaagtagcatagttctttgagaatacaataactgcaatcctggagtcttcaat 322  Q
    ||||||||||| ||  ||||||||||||| ||||||||| || ||||  |||||||  |||||||| || ||||||||    
T  31903970 gacaagttcatgtaagcaaaatgaagaagaagcatagtttttagagagcacaataatggcaatcctagactcttcaat 31903893  T

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Target: scaffold0349 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 273
Target Start/End: Original strand, 3423 - 3517
Alignment:
Q  179 aggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcatctagacaaaatgaagaag 273  Q
    |||||||||| || | ||||| || |||||||| |||| ||||  |||| || |||||||||| ||||||||||| || | ||||||||||||||    
T  3423 aggttccacaccaaataaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaag 3517  T

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