View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14739_low_18 (Length: 351)
Name: NF14739_low_18
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14739_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 22 - 336
Target Start/End: Complemental strand, 13794960 - 13794648
Alignment:
| Q |
22 |
ttgaagtcaaaagaacatttcttagcaatcctcgtaatctttttcaataaatgaatcatctacaattttaaataatatttagtaaacaaaacatatttac |
121 |
Q |
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| T |
13794960 |
ttgaagtcaaaagaacatttcttagcaatcctcgtaatctttttcaataaatgaatcatctacaattttaaataataattagtaaacaaaacatatttac |
13794861 |
T |
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| Q |
122 |
atttcgtttccggtggtgacaagtgaaaaacatgtctaactttcctttttgttaaccctaacttttttcaacaagttgagtttctctcaatcttgtttta |
221 |
Q |
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| T |
13794860 |
atttcgtttccggtggtgacaagtgaaaaacatgtctaactttcctttttgttaaccctaacttttttcaacaagttgagtttctctcaatcttgtttta |
13794761 |
T |
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| Q |
222 |
ttttcaaaattacctttgctattgtcactaaatttgtttgnnnnnnnnnncttgtattggattaggttctctgtttgatgattttattggattttatcac |
321 |
Q |
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| T |
13794760 |
ttttcaaaattacctttgctattgtcactaaatttgtttg--ttttttttcttgtattggattaggttctctgtttgatgattttattggattttatcac |
13794663 |
T |
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| Q |
322 |
tgattgagttctctg |
336 |
Q |
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| T |
13794662 |
tgattgagttctctg |
13794648 |
T |
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