View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14739_low_19 (Length: 348)

Name: NF14739_low_19
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14739_low_19
NF14739_low_19
[»] chr4 (3 HSPs)
chr4 (18-333)||(43942624-43942939)
chr4 (18-183)||(2501056-2501223)
chr4 (219-304)||(22073958-22074043)
[»] chr3 (2 HSPs)
chr3 (18-333)||(5884998-5885313)
chr3 (33-224)||(54946124-54946315)
[»] chr6 (3 HSPs)
chr6 (18-333)||(16856384-16856713)
chr6 (224-333)||(26615895-26616004)
chr6 (224-333)||(26721823-26721932)
[»] scaffold0182 (2 HSPs)
scaffold0182 (82-333)||(10744-10995)
scaffold0182 (18-122)||(10995-11098)
[»] chr7 (1 HSPs)
chr7 (33-224)||(47933322-47933513)
[»] chr2 (3 HSPs)
chr2 (26-152)||(26230828-26230954)
chr2 (212-311)||(653324-653423)
chr2 (204-305)||(40072113-40072214)
[»] chr1 (1 HSPs)
chr1 (203-313)||(51167421-51167531)
[»] chr5 (1 HSPs)
chr5 (204-311)||(27280853-27280953)


Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 43942624 - 43942939
Alignment:
Q  18 ttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtttactattgatgtcaataacaccaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43942624 ttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtctactattgatgtcaataacaccaa 43942723  T
Q  118 accatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcatttagaaacattgtgtgtataaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43942724 accatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaaacattgtgtgtataaa 43942823  T
Q  218 tatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgttttttccacc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  43942824 tatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgttttttccact 43942923  T
Q  318 cattttaactcttcat 333  Q
    ||||||||||||||||    
T  43942924 cattttaactcttcat 43942939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 2501223 - 2501056
Alignment:
Q  18 ttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtttactattgatgtcaataacaccaa 117  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||| | |||| | ||||||| ||||| |||||  || | |||||||||| |    
T  2501223 ttttctgctcattctgtaacatttcatgatcaattttatcatttacctcattctctcttcatttttccatcatgtctactacagaggacaataacaccga 2501124  T
Q  118 ac--catctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgtttttta 183  Q
    ||  |||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||    
T  2501123 accacatctttctacatttttcctcaaccatgctatccaaatgttctaatcttatttcatgtttttta 2501056  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 22073958 - 22074043
Alignment:
Q  219 atgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattac 304  Q
    |||| |||||| ||||||||||||||||||||||||||||||| ||||| |||||||||  || |||||||||||| ||| |||||    
T  22073958 atgtaattttgcgcaccaaattttgggttttgttcatcaccactttcaaacaacaattgtataattcatcttcaattttgaattac 22074043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 5885313 - 5884998
Alignment:
Q  18 ttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtttactattgatgtcaataacaccaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5885313 ttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtctactattgatgtcaataacaccaa 5885214  T
Q  118 accatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcatttagaaacattgtgtgtataaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5885213 accatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaaacattgtgtgtataaa 5885114  T
Q  218 tatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgttttttccacc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5885113 tatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgttttttccact 5885014  T
Q  318 cattttaactcttcat 333  Q
    ||||||||||||||||    
T  5885013 cattttaactcttcat 5884998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 33 - 224
Target Start/End: Complemental strand, 54946315 - 54946124
Alignment:
Q  33 gtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtttactattgatgtcaataacaccaaaccatctttctacac 132  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  54946315 gtaatatttgatgatcaattttatcatttgcctcattttttcttgacttttccaccatgtctactattgatgtcaataacaccaaaccatctttctacac 54946216  T
Q  133 ttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcatttagaaacattgtgtgtataaatatgtga 224  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  54946215 ttttcctctaccatgctatctaaatgttataatcttatatcatgttttttactatcgtgtcattgagaaacattgtgtgtataaatatgtga 54946124  T

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Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 16856384 - 16856713
Alignment:
Q  18 ttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtttactattgatgtcaataacaccaa 117  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16856384 ttttctgctcattctgtagtatttgttgatcaattttatcatttacctcattttttcttgacttttccaccatgtctactattgatgtcaataacaccaa 16856483  T
Q  118 accatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcatttagaaacattgtgtgtataaa 217  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||| ||||||||||||||||||||    
T  16856484 accaactttctacacttttcctctaccatgctatctaaatgttctaatctcatatcatgttttttactatcacatcattgagaaacattgtgtgtataaa 16856583  T
Q  218 tatgtgattttgt--------------gcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtatta 303  Q
    |||||||||||||              ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16856584 tatgtgattttgtgcaccaaattttgggcaccaaattttgggttttgttcatcaccgcattcaagcaacaattggttagttcatcttcaatattgtatta 16856683  T
Q  304 ctgttttttccacccattttaactcttcat 333  Q
    || |||||||||| ||||||||||||||||    
T  16856684 cttttttttccactcattttaactcttcat 16856713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 224 - 333
Target Start/End: Complemental strand, 26616004 - 26615895
Alignment:
Q  224 attttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgttttttccacccatttt 323  Q
    |||||| ||||||||||||||||||||||| |||||||||||||  ||||||||||||| ||||||||||| |||||||| |||| ||| ||| ||||||    
T  26616004 attttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattggttagatcatcttcaattttgtattattgttcttttcactcatttt 26615905  T
Q  324 aactcttcat 333  Q
    ||||||||||    
T  26615904 aactcttcat 26615895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 224 - 333
Target Start/End: Complemental strand, 26721932 - 26721823
Alignment:
Q  224 attttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgttttttccacccatttt 323  Q
    |||||| ||||||||||||||||||||||| |||||||||||||  ||||||||||||| ||||||||||| |||||||| |||| ||| ||| ||||||    
T  26721932 attttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattggttagatcatcttcaattttgtattattgttcttttcactcatttt 26721833  T
Q  324 aactcttcat 333  Q
    ||||||||||    
T  26721832 aactcttcat 26721823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 82 - 333
Target Start/End: Complemental strand, 10995 - 10744
Alignment:
Q  82 ttccaccatgtttactattgatgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttt 181  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10995 ttccaccatgtctactattgatgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttt 10896  T
Q  182 tactatcatgtcatttagaaacattgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggtta 281  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10895 tactatcatgtcattgagaaacattgtgtatataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggtta 10796  T
Q  282 gttcatcttcaatattgtattactgttttttccacccattttaactcttcat 333  Q
    |||||||||||||||||| |||||||||||||||| |||||||||| |||||    
T  10795 gttcatcttcaatattgtcttactgttttttccactcattttaacttttcat 10744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 11098 - 10995
Alignment:
Q  18 ttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtttactattgatgtcaataacaccaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  11098 ttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttctt-acttttccaccatgtctactattgatgtcaataacaccaa 11000  T
Q  118 accat 122  Q
    |||||    
T  10999 accat 10995  T

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Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 33 - 224
Target Start/End: Complemental strand, 47933513 - 47933322
Alignment:
Q  33 gtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtttactattgatgtcaataacaccaaaccatctttctacac 132  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47933513 gtaatatttgatgatcaattttatcatttgcctcattttttcttgacttttccaccatgtctactattgatgtcaataacaccaaaccatctttctacac 47933414  T
Q  133 ttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcatttagaaacattgtgtgtataaatatgtga 224  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  47933413 ttttcctctaccatgctatctaaatgttataatcttatatcatgttttttactatcgtgtcattgagaaacattgtgtgtataaatatgtga 47933322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 26 - 152
Target Start/End: Complemental strand, 26230954 - 26230828
Alignment:
Q  26 tcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtttactattgatgtcaataacaccaaaccatctt 125  Q
    |||||||||||||||||||||| || |||||||||||||||||| | ||||||||||||||| |||| |||| |||||||||||||||||||||||| ||    
T  26230954 tcattctgtaatatttgatgatgaagtttatcatttacctcattctctcttgacttttccactatgtctactgttgatgtcaataacaccaaaccatgtt 26230855  T
Q  126 tctacacttttcctctaccatgctatc 152  Q
    |||||||||||| |||| |||||||||    
T  26230854 tctacacttttcgtctatcatgctatc 26230828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 311
Target Start/End: Complemental strand, 653423 - 653324
Alignment:
Q  212 tataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgttttt 311  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||||||| || ||||||||| |||||| | |  ||||||| || |||||||| |||||||    
T  653423 tataaatatgttattttttgcaccaaagtttgggttttgttcatcacaactttcaagcaataattggatggaacatcttcgattttgtattattgttttt 653324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 204 - 305
Target Start/End: Complemental strand, 40072214 - 40072113
Alignment:
Q  204 attgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtatta 303  Q
    ||||||||||||| |||||  |||  | |||||||||||||||||||||  ||| | | ||||||||| |||||| || |||||||||||| ||||||||    
T  40072214 attgtgtgtataagtatgtagtttctttcaccaaattttgggttttgttgttcatccctttcaagcaataattggataattcatcttcaattttgtatta 40072115  T
Q  304 ct 305  Q
    ||    
T  40072114 ct 40072113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 313
Target Start/End: Complemental strand, 51167531 - 51167421
Alignment:
Q  203 cattgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtatt 302  Q
    ||||||||||||||||  |||| |||||||| |||||||||| |||||||||||||||| | |||||||| ||||  | |||| |||||||| || ||||    
T  51167531 cattgtgtgtataaattcgtgaatttgtgcagcaaattttggattttgttcatcaccacttccaagcaactattgaattgttcctcttcaattttctatt 51167432  T
Q  303 actgttttttc 313  Q
    | |||||||||    
T  51167431 attgttttttc 51167421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 27280953 - 27280853
Alignment:
Q  204 attgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtatta 303  Q
    |||||| ||||||||||||||||||||| ||       || ||||||| ||||||||| ||||||||| |||||| ||||||||||||||| || ||||     
T  27280953 attgtgcgtataaatatgtgattttgtgtac-------tgagttttgtccatcaccactttcaagcaataattggatagttcatcttcaattttatattg 27280861  T
Q  304 ctgttttt 311  Q
     |||||||    
T  27280860 atgttttt 27280853  T

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