View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14739_low_2 (Length: 603)
Name: NF14739_low_2
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14739_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Original strand, 48672255 - 48672840
Alignment:
| Q |
1 |
cttctagaatgacgctgcaccgattcggcaacacttctagtagcagcatttggtatgagcttgcttatatggaagctaaggaaaaagttaaaagaggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48672255 |
cttctagaatgacgctgcaccgattcggcaacacttctagtagcagcatttggtatgagcttgcttatatggaagctaaggaaaaagttaaaagaggaga |
48672354 |
T |
|
| Q |
101 |
ccgtgtttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttggcgttcgatgcgtcgtgttacaaaaccttcttctaggaacccttgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48672355 |
ccgtgtttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttggcgttcgatgcgtcgtgttacaaaaccttcttctaggaacccttgg |
48672454 |
T |
|
| Q |
201 |
cttgactgcattgatgcataccctgcttctctcaattaaaaagcacttttattattatgatcaatctatgatattgatcagtgatgatgattatgaaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48672455 |
cttgactgcattgatgcataccctgcttctctcaattaaaaagcacttttattattatgatcaatctatgatattgatcagtgatgatgattatgaaatt |
48672554 |
T |
|
| Q |
301 |
aagacttatttaggatatgaaataatggtagttttagttaagttggtgttttaaattttaattcctggcttgtgatattgcatactgttacactgaggca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48672555 |
aagacttatttaggatatgaaataatggtagttttagttaagttggtgttttaaattttaattcctggcttgtgatattgcatactgttacactgaggca |
48672654 |
T |
|
| Q |
401 |
tatataacatcatgtgcctttgttttctcagtactcttttaaatttttaagctactttttctttctcattgattacttggctttaaattgtaatatgtta |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48672655 |
tatataacatcatgtgcctttgttttctcagtactc-tttaaatttttaagctactttttctttctcattgattacttggctttaaattgtaatctgtta |
48672753 |
T |
|
| Q |
501 |
ctgatgcctaatgtttctatgtctctttaaaaataataggaccatgtttgatcaagaaaaataataggaccatatcaaattatgaat |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48672754 |
ctgatgcctaatgtttctatgtctctttaaaaataataggaccatgtttgatcaagaaaaataataggaccatatcaaattatgaat |
48672840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 15239657 - 15239705
Alignment:
| Q |
107 |
ttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttgg |
155 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15239657 |
ttggcaaattgcatttggttctggttttaagtgtaatagtgctgtttgg |
15239705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 34053356 - 34053407
Alignment:
| Q |
107 |
ttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttggcgt |
158 |
Q |
| |
|
||||||| |||| ||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
34053356 |
ttggcaaattgcatttggttctggatttaaatgtaacagtgctgtgtggcgt |
34053407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 19742853 - 19742804
Alignment:
| Q |
106 |
tttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttgg |
155 |
Q |
| |
|
|||||||| |||| ||||| ||||| ||||||||||||| |||||||||| |
|
|
| T |
19742853 |
tttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttgg |
19742804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 19797235 - 19797284
Alignment:
| Q |
106 |
tttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttgg |
155 |
Q |
| |
|
|||||||| |||| ||||| ||||| ||||||||||||| |||||||||| |
|
|
| T |
19797235 |
tttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttgg |
19797284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University