View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14739_low_20 (Length: 345)
Name: NF14739_low_20
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14739_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 16230587 - 16230908
Alignment:
| Q |
1 |
aaccaaagatgctattcctactgatggaaaagctatacaatacacaactaaattctggacaaatggcaaaaataaagtcgatgagctaacagatgatcaa |
100 |
Q |
| |
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|||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16230587 |
aaccaaagatgctattcctactgatgtgaaagatatacaatacacaactgaattctggacaaatggcaaaaataaagtcgatgagctaacagatgatcaa |
16230686 |
T |
|
| Q |
101 |
gggaagctaacaaagtcctcaattacaacagttggtaagaaaaggaactattccatttatgattttacttctaacagtaaaatgaatgattctctcgaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
16230687 |
aggaagctaacaaagtcctcaattacaacagtcggtgagaaaaggaactatgccatttatgattttacttctaacactaaaatgaatgattctctcgaaa |
16230786 |
T |
|
| Q |
201 |
ggcttagaagccggtcaaatatcataagagccagactccataatatatggcataatagacaacagaaactcggtggaaatcgacagcacacctactccca |
300 |
Q |
| |
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||| |||||||| ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16230787 |
ggc-tagaagccagtcaaatatcagatgagccagactccataatctatggcataatagacaacagaaactcggtggaaatcgacagcacacctactccca |
16230885 |
T |
|
| Q |
301 |
gtgagaaacttattattattatt |
323 |
Q |
| |
|
|||| ||||||||||||||||| |
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| T |
16230886 |
atgaggaacttattattattatt |
16230908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 34688354 - 34688675
Alignment:
| Q |
1 |
aaccaaagatgctattcctactgatggaaaagctatacaatacacaactaaattctggacaaatggcaaaaataaagtcgatgagc---taacagatgat |
97 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||| | ||||||| ||| ||||||||||| |||||| |||||| |||||| ||||||||||| |
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|
| T |
34688354 |
aaccaaagatgctattcctacttatggaaaagatatacgaaacacaaccgaatcctggacaaatgccaaaaagaaagtcaatgagctaataacagatgat |
34688453 |
T |
|
| Q |
98 |
caagggaagctaacaaagtcctcaattacaacagttggtaagaaaaggaactattccatttatgattttacttctaacagtaaaatgaatgattctctcg |
197 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||| | |||||| |||| | | |||||||||||||||||| | | ||| |||||||| |||| |
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| T |
34688454 |
caagggaagctaacgaagtcctcaattacaaaagttactgagaaaaagaaccacgcaatttatgattttacttctgagactaa----aatgattccctcg |
34688549 |
T |
|
| Q |
198 |
aaaggcttagaagccggtcaaatatcataagagccagactccataatatatggcataatagacaacagaaactcggtggaaatcgacagcacacctactc |
297 |
Q |
| |
|
|||||||||||||| |||||||||||| | ||| |||||||||||| |||||| | |||||||||||||||| |||||| |||||||| | ||||||| |
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|
| T |
34688550 |
aaaggcttagaagctggtcaaatatcagatgagaaagactccataatctatggcctgatagacaacagaaactaggtggacatcgacagtatgcctactc |
34688649 |
T |
|
| Q |
298 |
ccagtgagaaacttattattattatt |
323 |
Q |
| |
|
||| || ||||||||||||||||| |
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|
| T |
34688650 |
tcaggaaggaacttattattattatt |
34688675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 34710766 - 34711087
Alignment:
| Q |
1 |
aaccaaagatgctattcctactgatggaaaagctatacaatacacaactaaattctggacaaatggcaaaaataaagtcgatgagc---taacagatgat |
97 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||| | ||||||| ||| ||||||||||| |||||| |||||| |||||| ||||||||||| |
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|
| T |
34710766 |
aaccaaagatgctattcctacttatggaaaagatatacgaaacacaaccgaatcctggacaaatgccaaaaagaaagtcaatgagctaataacagatgat |
34710865 |
T |
|
| Q |
98 |
caagggaagctaacaaagtcctcaattacaacagttggtaagaaaaggaactattccatttatgattttacttctaacagtaaaatgaatgattctctcg |
197 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||| | |||||| |||| | | |||||||||||||||||| | | ||| |||||||| |||| |
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|
| T |
34710866 |
caagggaagctaacgaagtcctcaattacaaaagttactgagaaaaagaaccacgcaatttatgattttacttctgagactaa----aatgattccctcg |
34710961 |
T |
|
| Q |
198 |
aaaggcttagaagccggtcaaatatcataagagccagactccataatatatggcataatagacaacagaaactcggtggaaatcgacagcacacctactc |
297 |
Q |
| |
|
|||||||||||||| |||||||||||| | ||| |||||||||||| |||||| | |||||||||||||||| |||||| |||||||| | ||||||| |
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|
| T |
34710962 |
aaaggcttagaagctggtcaaatatcagatgagaaagactccataatctatggcctgatagacaacagaaactaggtggacatcgacagtatgcctactc |
34711061 |
T |
|
| Q |
298 |
ccagtgagaaacttattattattatt |
323 |
Q |
| |
|
||| || ||||||||||||||||| |
|
|
| T |
34711062 |
tcaggaaggaacttattattattatt |
34711087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 297
Target Start/End: Complemental strand, 35565035 - 35564848
Alignment:
| Q |
110 |
acaaagtcctcaattacaacagttggtaagaaaaggaactatt----ccatttatgattttacttctaacagtaaaatgaatgattctctcgaaaggctt |
205 |
Q |
| |
|
|||||||||||| ||||| ||||| || |||||| ||||||| | ||||||||||| |||||||| | |||||||| ||||| |||||||| |
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|
| T |
35565035 |
acaaagtcctcatttacagcagttagtgagaaaaagaactatatatgcgatttatgatttgacttctaagactaaaatga----ttctcatgaaaggcta |
35564940 |
T |
|
| Q |
206 |
agaagccggtcaaatatcataagagccagactccataatatatggcataatagacaacagaaactcggtggaaatcgacagcacacctactc |
297 |
Q |
| |
|
|| ||| |||||||||||| | |||||||||||||| || ||| |||| |||||| |||||||| | ||||||| ||||| ||| |||||| |
|
|
| T |
35564939 |
aggagctggtcaaatatcagatgagccagactccatcatctattgcatgatagacgacagaaacacattggaaattgacagtacatctactc |
35564848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 241
Target Start/End: Complemental strand, 35547075 - 35546948
Alignment:
| Q |
110 |
acaaagtcctcaattacaacagttggtaagaaaaggaactattccatttatgattttacttctaacagtaaaatgaatgattctctcgaaaggcttagaa |
209 |
Q |
| |
|
||||||||||||||||||| |||| | |||||| ||||||| ||||||||||| |||||||| | ||| |||||||||| |||||||| || | |
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|
| T |
35547075 |
acaaagtcctcaattacaaaagttactgagaaaaagaactatatgatttatgatttgacttctaagactaa----aatgattctcatgaaaggctaagga |
35546980 |
T |
|
| Q |
210 |
gccggtcaaatatcataagagccagactccat |
241 |
Q |
| |
|
|| |||||||||||| | |||||||||||||| |
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|
| T |
35546979 |
gctggtcaaatatcagatgagccagactccat |
35546948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 52 - 260
Target Start/End: Original strand, 46519911 - 46520115
Alignment:
| Q |
52 |
attctggacaaatggcaaaaataaagtcgatgagctaacagatgatcaagggaagctaacaaagtcctcaattacaacagttggtaagaaaaggaactat |
151 |
Q |
| |
|
|||||||||||||| |||||| |||| ||||||| ||||| |||||||| ||||||||||||||||||| ||||||| ||| || ||||| |||||| |
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|
| T |
46519911 |
attctggacaaatgccaaaaagaaagccgatgaggtaacatttgatcaagagaagctaacaaagtcctcagttacaactgttagtgggaaaacgaactac |
46520010 |
T |
|
| Q |
152 |
tccatttatgattttacttctaacagtaaaatgaatgattctctcgaaaggcttagaagccggtcaaatatcataagagccagactccataatatatggc |
251 |
Q |
| |
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||||||||||| |||||| | ||| |||||||| |||||||||||||||||| |||| ||||||||| |||||||| ||| |||| |||||| |
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| T |
46520011 |
gtgatttatgatttgacttctgagcctaa----aatgattccctcgaaaggcttagaagctggtcgaatatcatatgagccagattccctaatctatggc |
46520106 |
T |
|
| Q |
252 |
ataatagac |
260 |
Q |
| |
|
|| |||||| |
|
|
| T |
46520107 |
atgatagac |
46520115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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