View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14739_low_21 (Length: 343)

Name: NF14739_low_21
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14739_low_21
NF14739_low_21
[»] chr2 (5 HSPs)
chr2 (1-245)||(38043990-38044236)
chr2 (1-245)||(38068337-38068583)
chr2 (253-320)||(14360107-14360174)
chr2 (253-329)||(34024743-34024819)
chr2 (257-300)||(7000498-7000541)
[»] chr7 (1 HSPs)
chr7 (246-330)||(42010684-42010768)
[»] chr3 (3 HSPs)
chr3 (238-330)||(26251297-26251389)
chr3 (247-330)||(49015465-49015548)
chr3 (253-298)||(45525836-45525881)
[»] chr8 (5 HSPs)
chr8 (246-330)||(9232819-9232903)
chr8 (248-321)||(32039059-32039132)
chr8 (253-300)||(27562647-27562694)
chr8 (253-300)||(42146063-42146110)
chr8 (253-303)||(30152451-30152501)
[»] chr6 (5 HSPs)
chr6 (246-330)||(27335447-27335531)
chr6 (246-330)||(27396187-27396271)
chr6 (243-312)||(25049486-25049555)
chr6 (253-300)||(30452852-30452899)
chr6 (254-300)||(18058399-18058445)
[»] chr4 (9 HSPs)
chr4 (246-330)||(29820263-29820347)
chr4 (254-330)||(48513480-48513556)
chr4 (244-330)||(31416516-31416602)
chr4 (246-330)||(53409928-53410012)
chr4 (247-330)||(52488647-52488730)
chr4 (248-330)||(48473418-48473500)
chr4 (246-330)||(37385848-37385932)
chr4 (246-303)||(42478260-42478317)
chr4 (256-300)||(42057949-42057993)
[»] chr1 (8 HSPs)
chr1 (246-330)||(6850145-6850229)
chr1 (246-329)||(5056012-5056094)
chr1 (253-330)||(46879060-46879137)
chr1 (246-300)||(14998502-14998556)
chr1 (253-320)||(29922475-29922542)
chr1 (253-300)||(38863435-38863482)
chr1 (253-299)||(26733477-26733523)
chr1 (254-300)||(47215499-47215545)
[»] chr5 (6 HSPs)
chr5 (272-330)||(32772401-32772459)
chr5 (253-300)||(14136453-14136500)
chr5 (253-300)||(11782215-11782262)
chr5 (253-300)||(27514257-27514304)
chr5 (255-299)||(1463787-1463831)
chr5 (272-300)||(40323444-40323472)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 38043990 - 38044236
Alignment:
Q  1 ctatcactcaagtttgaatttcaaattttaatatgagtttacagaccaaacaaacgtttaagcgttaagcaactagcattgagatattttaatatgtgta 100  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38043990 ctatcactcaagtttgaatttaaaatttgaatatgagtttacagaccaaacaaacgtttaagcgttaagcaactagcattgagatattttaatatgtgta 38044089  T
Q  101 ttttataaggatttctctcacacggtcgcatttaaaaataaccaggacagggccatacaactgcttgaaatttacaccaaagattcacaaaatggcacat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  38044090 ttttataaggatttctctcacacggtcgcatttaaaaataacccggacagggccatacagctgcttgaaatttacaccaaacattcacaaaatgacacat 38044189  T
Q  201 acaaatgaacaagatgtaa--gtgtgtgtgacacttatgtgatatag 245  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||    
T  38044190 acaaatgaacaagatgtaagtgtgtgtgtgacacttatgtgatatag 38044236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 38068337 - 38068583
Alignment:
Q  1 ctatcactcaagtttgaatttcaaattttaatatgagtttacagaccaaacaaacgtttaagcgttaagcaactagcattgagatattttaatatgtgta 100  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38068337 ctatcactcaagtttgaatttaaaatttgaatatgagtttacagaccaaacaaacgtttaagcgttaagcaactagcattgagatattttaatatgtgta 38068436  T
Q  101 ttttataaggatttctctcacacggtcgcatttaaaaataaccaggacagggccatacaactgcttgaaatttacaccaaagattcacaaaatggcacat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  38068437 ttttataaggatttctctcacacggtcgcatttaaaaataacccggacagggccatacagctgcttgaaatttacaccaaacattcacaaaatgacacat 38068536  T
Q  201 acaaatgaacaagatgtaa--gtgtgtgtgacacttatgtgatatag 245  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||    
T  38068537 acaaatgaacaagatgtaagtgtgtgtgtgacacttatgtgatatag 38068583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 14360107 - 14360174
Alignment:
Q  253 tataaaatgaacccatgagaatattggtctatgatggaccaattttttcaacggttggattagatgaa 320  Q
    |||||||||||||||||| |||||||||| || || |||||||||||||||||||| ||||| |||||    
T  14360107 tataaaatgaacccatgaaaatattggtccatcatagaccaattttttcaacggttagattatatgaa 14360174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 34024743 - 34024819
Alignment:
Q  253 tataaaatgaacccatgagaatattggtctatgatggaccaattttttcaacggttggattagatgaatcccaaaat 329  Q
    |||||||||||||||||| |||||| |||||| |||||||||| |||||||  ||| ||||| ||||||||| ||||    
T  34024743 tataaaatgaacccatgaaaatatttgtctattatggaccaatattttcaatagttagattatatgaatccctaaat 34024819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 300
Target Start/End: Complemental strand, 7000541 - 7000498
Alignment:
Q  257 aaatgaacccatgagaatattggtctatgatggaccaatttttt 300  Q
    ||||||||  |||| |||||||||||||||||||||||||||||    
T  7000541 aaatgaacatatgaaaatattggtctatgatggaccaatttttt 7000498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 246 - 330
Target Start/End: Original strand, 42010684 - 42010768
Alignment:
Q  246 ggttccttataaaatgaacccatgagaatattggtctatgatggaccaattttttcaacggttggattagatgaatcccaaaatt 330  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |||||||||    
T  42010684 ggttccttataaaatgaacccatgagaatattggtccatgatggaccaattttttcaacggttagaatagatgaaccccaaaatt 42010768  T

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Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 238 - 330
Target Start/End: Complemental strand, 26251389 - 26251297
Alignment:
Q  238 tgatatagggttccttataaaatgaacccatgagaatattggtctatgatggaccaattttttcaacggttggattagatgaatcccaaaatt 330  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| |||||||||    
T  26251389 tgatatatggttccttataaaatgaacccatgagaatattggtccatgatggatcaattttttcaacggttagattaaatgaaccccaaaatt 26251297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 49015465 - 49015548
Alignment:
Q  247 gttccttataaaatgaacccatgagaatattggtctatgatggaccaattttttcaacggttggattagatgaatcccaaaatt 330  Q
    ||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |||||||    
T  49015465 gttccttataaaatgaatctctgagaatattggtctatgatggaccaattttttcaacggttagattaaatgaacctcaaaatt 49015548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 45525836 - 45525881
Alignment:
Q  253 tataaaatgaacccatgagaatattggtctatgatggaccaatttt 298  Q
    |||||||||||||||| | |||||||||| || |||||||||||||    
T  45525836 tataaaatgaacccataaaaatattggtccatcatggaccaatttt 45525881  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 246 - 330
Target Start/End: Original strand, 9232819 - 9232903
Alignment:
Q  246 ggttccttataaaatgaacccatgagaatattggtctatgatggaccaattttttcaacggttggattagatgaatcccaaaatt 330  Q
    ||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||| |||||||||    
T  9232819 ggttccttataaaatgaacccatgagaatattgatccatgatggatcaattttttcaacggttagattagatgaaccccaaaatt 9232903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 32039132 - 32039059
Alignment:
Q  248 ttccttataaaatgaacccatgagaatattggtctatgatggaccaattttttcaacggttggattagatgaat 321  Q
    ||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| |||| ||||| ||||||    
T  32039132 ttccttataaaatgaacccatgaaaatattggtttatgatggatcaattttttcaatggttagattatatgaat 32039059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 300
Target Start/End: Complemental strand, 27562694 - 27562647
Alignment:
Q  253 tataaaatgaacccatgagaatattggtctatgatggaccaatttttt 300  Q
    ||||||||||||| || | |||||||||||||||||||| ||||||||    
T  27562694 tataaaatgaacctataaaaatattggtctatgatggactaatttttt 27562647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 42146063 - 42146110
Alignment:
Q  253 tataaaatgaacccatgagaatattggtctatgatggaccaatttttt 300  Q
    ||||||||||||| || | |||||||||| ||||||||||||||||||    
T  42146063 tataaaatgaacctataaaaatattggtccatgatggaccaatttttt 42146110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 30152501 - 30152451
Alignment:
Q  253 tataaaatgaacccatgagaatattggtctatgatggaccaattttttcaa 303  Q
    |||||||||||||||| |  ||||||||| ||||||||||||| |||||||    
T  30152501 tataaaatgaacccatcaagatattggtccatgatggaccaatcttttcaa 30152451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 246 - 330
Target Start/End: Original strand, 27335447 - 27335531
Alignment:
Q  246 ggttccttataaaatgaacccatgagaatattggtctatgatggaccaattttttcaacggttggattagatgaatcccaaaatt 330  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||| ||||||||||| |||||||||    
T  27335447 ggttccttataaaatgaacccatgagaatattggtccatgatggaccaattttttcaatagttagattagatgaaccccaaaatt 27335531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 246 - 330
Target Start/End: Original strand, 27396187 - 27396271
Alignment:
Q  246 ggttccttataaaatgaacccatgagaatattggtctatgatggaccaattttttcaacggttggattagatgaatcccaaaatt 330  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||| ||||||||||| |||||||||    
T  27396187 ggttccttataaaatgaacccatgagaatattggtccatgatggaccaattttttcaatagttagattagatgaaccccaaaatt 27396271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 25049486 - 25049555
Alignment:
Q  243 tagggttccttataaaatgaacccatgagaatattggtctatgatggaccaattttttcaacggttggat 312  Q
    ||||||||  |||||||||||| || || ||||||||| |||||||||||||||||||| || |||||||    
T  25049486 tagggttctgtataaaatgaacgcacgaaaatattggtttatgatggaccaattttttctaccgttggat 25049555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 300
Target Start/End: Complemental strand, 30452899 - 30452852
Alignment:
Q  253 tataaaatgaacccatgagaatattggtctatgatggaccaatttttt 300  Q
    |||||||| |||| || | |||||||||||||||||||||||||||||    
T  30452899 tataaaataaacctataataatattggtctatgatggaccaatttttt 30452852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 18058399 - 18058445
Alignment:
Q  254 ataaaatgaacccatgagaatattggtctatgatggaccaatttttt 300  Q
    |||||||||||| || | |||||||||| ||||||||||||||||||    
T  18058399 ataaaatgaacctataaaaatattggtccatgatggaccaatttttt 18058445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 246 - 330
Target Start/End: Complemental strand, 29820347 - 29820263
Alignment:
Q  246 ggttccttataaaatgaacccatgagaatattggtctatgatggaccaattttttcaacggttggattagatgaatcccaaaatt 330  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||| |||||||||    
T  29820347 ggttccttgtaaaatgaacccatgagaatattggtttatgatggaccaattttttcaacggttaaattagatgaaccccaaaatt 29820263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 48513556 - 48513480
Alignment:
Q  254 ataaaatgaacccatgagaatattggtctatgatggaccaattttttcaacggttggattagatgaatcccaaaatt 330  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||    
T  48513556 ataaaatgaacccatgagaatattggtccatgatggaccaattttttcaacggttagattagatgaaccccaaaatt 48513480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 244 - 330
Target Start/End: Original strand, 31416516 - 31416602
Alignment:
Q  244 agggttccttataaaatgaacccatgagaatattggtctatgatggaccaattttttcaacggttggattagatgaatcccaaaatt 330  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| |||||  ||||||||    
T  31416516 agggttccttataaaatgaacccatgagaatattggtccatgatggaccaatttttttaacggttagattacatgaactccaaaatt 31416602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 246 - 330
Target Start/End: Complemental strand, 53410012 - 53409928
Alignment:
Q  246 ggttccttataaaatgaacccatgagaatattggtctatgatggaccaattttttcaacggttggattagatgaatcccaaaatt 330  Q
    ||||||||||||||||||||||||||||||||| | || |||||| ||||||||||||||||| ||||| |||||||||||||||    
T  53410012 ggttccttataaaatgaacccatgagaatattgatttaagatggatcaattttttcaacggttagattaaatgaatcccaaaatt 53409928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 52488647 - 52488730
Alignment:
Q  247 gttccttataaaatgaacccatgagaatattggtctatgatggaccaattttttcaacggttggattagatgaatcccaaaatt 330  Q
    ||||||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||    
T  52488647 gttccttgtaaaatgaatctatgagaatattggtctaagatggaccaattttttcaacggttagattagatgaaccccaaaatt 52488730  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 48473418 - 48473500
Alignment:
Q  248 ttccttataaaatgaacccatgagaatattggtctatgatggaccaattttttcaacggttggattagatgaatcccaaaatt 330  Q
    |||||||||||||||| |||| ||||||||||| || |||||| ||||||||||||||||| ||||||||||| |||||||||    
T  48473418 ttccttataaaatgaaaccataagaatattggtttacgatggatcaattttttcaacggttagattagatgaaccccaaaatt 48473500  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 330
Target Start/End: Complemental strand, 37385932 - 37385848
Alignment:
Q  246 ggttccttataaaatgaacccatgagaatattggtctatgatggaccaattttttcaacggttggattagatgaatcccaaaatt 330  Q
    |||||| |||||||||||  ||||  |||||||||||||||| ||||||||||||||| | || ||||| ||||| ||| |||||    
T  37385932 ggttccgtataaaatgaattcatggaaatattggtctatgatagaccaattttttcaatgattagattatatgaacccctaaatt 37385848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 42478317 - 42478260
Alignment:
Q  246 ggttccttataaaatgaacccatgagaatattggtctatgatggaccaattttttcaa 303  Q
    |||||| |||||||||||||||||| ||||||| |  |||||||| ||||||||||||    
T  42478317 ggttccgtataaaatgaacccatgaaaatattgattcatgatggatcaattttttcaa 42478260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 42057993 - 42057949
Alignment:
Q  256 aaaatgaacccatgagaatattggtctatgatggaccaatttttt 300  Q
    |||||||||| || | ||||||||| |||||||||||||||||||    
T  42057993 aaaatgaacctataaaaatattggtttatgatggaccaatttttt 42057949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 246 - 330
Target Start/End: Original strand, 6850145 - 6850229
Alignment:
Q  246 ggttccttataaaatgaacccatgagaatattggtctatgatggaccaattttttcaacggttggattagatgaatcccaaaatt 330  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||  |||||||||    
T  6850145 ggttccttataaaatgaacccatgagaatattggtccatgatggatcaattttttcaacggttagattagatgagccccaaaatt 6850229  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 246 - 329
Target Start/End: Complemental strand, 5056094 - 5056012
Alignment:
Q  246 ggttccttataaaatgaacccatgagaatattggtctatgatggaccaattttttcaacggttggattagatgaatcccaaaat 329  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||| |||| ||||| ||||||||| ||||    
T  5056094 ggttccttataaaatgaacccatgaaaatattggtccatgatggaccaat-ttttcaatggttagattatatgaatccctaaat 5056012  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 253 - 330
Target Start/End: Original strand, 46879060 - 46879137
Alignment:
Q  253 tataaaatgaacccatgagaatattggtctatgatggaccaattttttcaacggttggattagatgaatcccaaaatt 330  Q
    |||||||||||||||||| |||||||||| ||||||||| ||||||||||| |||| ||||| ||||||||| |||||    
T  46879060 tataaaatgaacccatgaaaatattggtccatgatggactaattttttcaatggttagattatatgaatccctaaatt 46879137  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 14998502 - 14998556
Alignment:
Q  246 ggttccttataaaatgaacccatgagaatattggtctatgatggaccaatttttt 300  Q
    |||||||||||||||||||| || | |||||||||| ||||||||||||||||||    
T  14998502 ggttccttataaaatgaacctataaaaatattggtccatgatggaccaatttttt 14998556  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 29922542 - 29922475
Alignment:
Q  253 tataaaatgaacccatgagaatattggtctatgatggaccaattttttcaacggttggattagatgaa 320  Q
    ||||||||||| |||||  |||||||||  ||||||||||||||||||||| |||| ||||| |||||    
T  29922542 tataaaatgaatccatggaaatattggttcatgatggaccaattttttcaatggttagattatatgaa 29922475  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 38863435 - 38863482
Alignment:
Q  253 tataaaatgaacccatgagaatattggtctatgatggaccaatttttt 300  Q
    ||||||||||||| || | |||||||||||||||||||||||||||||    
T  38863435 tataaaatgaacctataaaaatattggtctatgatggaccaatttttt 38863482  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 26733523 - 26733477
Alignment:
Q  253 tataaaatgaacccatgagaatattggtctatgatggaccaattttt 299  Q
    ||||||||||||  || | ||||||||||||||||||||||||||||    
T  26733523 tataaaatgaacttataaaaatattggtctatgatggaccaattttt 26733477  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 47215499 - 47215545
Alignment:
Q  254 ataaaatgaacccatgagaatattggtctatgatggaccaatttttt 300  Q
    |||||||||||| || | |||||||||| ||||||||||||||||||    
T  47215499 ataaaatgaacctataaaaatattggtccatgatggaccaatttttt 47215545  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 32772459 - 32772401
Alignment:
Q  272 aatattggtctatgatggaccaattttttcaacggttggattagatgaatcccaaaatt 330  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  32772459 aatattggtctatgatggaccaattttttcaacggttagattagatgaaccccaaaatt 32772401  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 300
Target Start/End: Complemental strand, 14136500 - 14136453
Alignment:
Q  253 tataaaatgaacccatgagaatattggtctatgatggaccaatttttt 300  Q
    ||||||||||||| || | |||||||||||||||||||||||||||||    
T  14136500 tataaaatgaacctataaaaatattggtctatgatggaccaatttttt 14136453  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 300
Target Start/End: Complemental strand, 11782262 - 11782215
Alignment:
Q  253 tataaaatgaacccatgagaatattggtctatgatggaccaatttttt 300  Q
    ||||||||||||| || | |||||||||| ||||||||||||||||||    
T  11782262 tataaaatgaacctataaaaatattggtccatgatggaccaatttttt 11782215  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 300
Target Start/End: Complemental strand, 27514304 - 27514257
Alignment:
Q  253 tataaaatgaacccatgagaatattggtctatgatggaccaatttttt 300  Q
    ||||||||||||| || | |||||||||| ||||||||||||||||||    
T  27514304 tataaaatgaacctataaaaatattggtccatgatggaccaatttttt 27514257  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 1463831 - 1463787
Alignment:
Q  255 taaaatgaacccatgagaatattggtctatgatggaccaattttt 299  Q
    ||||||||||| || | |||||||||| |||||||||||||||||    
T  1463831 taaaatgaacctataaaaatattggtccatgatggaccaattttt 1463787  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 300
Target Start/End: Complemental strand, 40323472 - 40323444
Alignment:
Q  272 aatattggtctatgatggaccaatttttt 300  Q
    |||||||||||||||||||||||||||||    
T  40323472 aatattggtctatgatggaccaatttttt 40323444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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