View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14739_low_23 (Length: 332)
Name: NF14739_low_23
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14739_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 4 - 318
Target Start/End: Complemental strand, 30661152 - 30660838
Alignment:
| Q |
4 |
atattggcatttaaaatggagtaggaaacaaaacagtacacacccacgtgtgaaattaaacaaacaagctacaaccacgtttcagtttccaacccacaaa |
103 |
Q |
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| T |
30661152 |
atatgggcatttaaaatggagtaggaaacaaaacagtacacacccacgtgtgaaattaaacaaacaagctacaaccacgtttcagtttccaacccacaaa |
30661053 |
T |
|
| Q |
104 |
ctacaagctgtaaagcacaccgcactctctctggttgctcaatcaagtcaatacactcatctttacacaaacaaataa------tactatatagtataca |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
30661052 |
ctacaagctgtaaagcacaccgcactctctctggttgctcaatcaagtcaatacactcatctttacacaaacatataatactagtactatatagtataca |
30660953 |
T |
|
| Q |
198 |
aacaacatgctactagtactaccatgtgatttccaattaacaacataataaatattgaaccaataacaacaacatcctcaacctcaactttaactttgtc |
297 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30660952 |
aacaacatgc------tactaccatgtgatttccaattaacaacataataaatattgaaccaataacaacaacatcctcaacctcaactttaactttgtc |
30660859 |
T |
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| Q |
298 |
atggcaaatatacctctttat |
318 |
Q |
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||||||||||||||||||||| |
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| T |
30660858 |
atggcaaatatacctctttat |
30660838 |
T |
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