View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14739_low_24 (Length: 315)

Name: NF14739_low_24
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14739_low_24
NF14739_low_24
[»] chr1 (1 HSPs)
chr1 (160-297)||(49247507-49247644)
[»] chr5 (3 HSPs)
chr5 (11-160)||(31698245-31698394)
chr5 (11-137)||(8726126-8726251)
chr5 (44-156)||(42838094-42838206)
[»] chr3 (2 HSPs)
chr3 (12-159)||(34279533-34279680)
chr3 (50-123)||(7237770-7237843)
[»] scaffold0057 (1 HSPs)
scaffold0057 (57-128)||(41295-41366)
[»] chr4 (1 HSPs)
chr4 (27-127)||(25352409-25352509)
[»] chr6 (1 HSPs)
chr6 (44-156)||(22501846-22501958)
[»] chr7 (1 HSPs)
chr7 (44-123)||(24768348-24768427)


Alignment Details
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 160 - 297
Target Start/End: Complemental strand, 49247644 - 49247507
Alignment:
Q  160 atcaaattattagattccaatatagaattttgtacaatattttaattttgttgtcctctcaaataagaaaatcatggaagatatcatatctctagctttt 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49247644 atcaaattattagattccaatatagaattttgtacaatattttaattttgttgtcctctcaaataagaaaatcatggaagatatcatatctctagctttt 49247545  T
Q  260 ctgcccatagtttcctactgcaagtctaatggcataag 297  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49247544 ctgcccatagtttcctactgcaagtctaatggcataag 49247507  T

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Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 31698394 - 31698245
Alignment:
Q  11 cagagaagaaagatgggaatgttagaagaaaggggcacgtgaaatatcatttttacccttaactttttaacaatactacaaaattgtcatccacatgggc 110  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  31698394 cagagaagaaagatgagaatgttagaagaaaggggcacgtgaaatctcatttttacccttaactttttaacaacactacaaaattgccatccacatgggc 31698295  T
Q  111 atgtgtataagagaggtgtaggaaagggtgtgtctataaaacatttccca 160  Q
    ||||||||||||||||||||| ||| ||| ||||||| ||||||||||||    
T  31698294 atgtgtataagagaggtgtagaaaatggtatgtctatgaaacatttccca 31698245  T

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Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 8726126 - 8726251
Alignment:
Q  11 cagagaagaaagatgggaatgttagaagaaaggggcacgtgaaatatcatttttacccttaactttttaacaatactacaaaattgtcatccacatgggc 110  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8726126 cagagaagagagatgagaatgttagaagaaaggggcacgtgaaatctcatttttacccttaactttttaacaatactacaaaattgccatccacatgggc 8726225  T
Q  111 atgtgtataagagaggtgtaggaaagg 137  Q
    |||||||||| |||||||||| |||||    
T  8726226 atgtgtataa-agaggtgtagaaaagg 8726251  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 42838206 - 42838094
Alignment:
Q  44 ggcacgtgaaatatcatttttacccttaactttttaacaatactacaaaattgtcatccacatgggcatgtgtataagagaggtgtaggaaagggtgtgt 143  Q
    |||||||||||| ||| |||||||| |  ||||||||||| | ||||||  || |||||||||||||| ||||||||||| |||  | ||||  ||||||    
T  42838206 ggcacgtgaaatctcaattttaccccttcctttttaacaaaattacaaagctgccatccacatgggcaggtgtataagaggggtacaagaaaaagtgtgt 42838107  T
Q  144 ctataaaacattt 156  Q
    |||| || |||||    
T  42838106 ctatgaatcattt 42838094  T

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Target: chr3 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 34279533 - 34279680
Alignment:
Q  12 agagaagaaagatgggaatgttagaagaaaggggcacgtgaaatatcatttttacccttaactttttaacaatactacaaaattgtcatccacatgggca 111  Q
    |||||||| ||||| | ||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34279533 agagaagagagatgagtatgttagaagagaggggcatgtgaaatctcatttttacccttaactttttaacaatactacaaaattgccatccacatgggca 34279632  T
Q  112 tgtgtataagagaggtgtaggaaagggtgtgtctataaaacatttccc 159  Q
    ||||||||| |||||||||| ||||||||||||||| || ||||||||    
T  34279633 tgtgtataaaagaggtgtagaaaagggtgtgtctatgaatcatttccc 34279680  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 7237770 - 7237843
Alignment:
Q  50 tgaaatatcatttttacccttaactttttaacaatactacaaaattgtcatccacatgggcatgtgtataagag 123  Q
    |||||| ||| |||||||| |  ||||||||||| | ||||||  || |||||||||||||| |||||||||||    
T  7237770 tgaaatctcaattttaccccttcctttttaacaaaattacaaagctgccatccacatgggcaggtgtataagag 7237843  T

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Target: scaffold0057 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 41366 - 41295
Alignment:
Q  57 tcatttttacccttaactttttaacaatactacaaaattgtcatccacatgggcatgtgtataagagaggtg 128  Q
    |||||||||||| | |||||||||||||| |||| || || |||||||||||||||||||| ||||||||||    
T  41366 tcatttttacccctgactttttaacaatattacataactgccatccacatgggcatgtgtacaagagaggtg 41295  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 25352409 - 25352509
Alignment:
Q  27 gaatgttagaagaaaggggcacgtgaaatatcatttttacccttaactttttaacaatactacaaaattgtcatccacatgggcatgtgtataagagagg 126  Q
    ||||||||||||||| ||  | ||||||| |||||||||||| | | |||||||||||| ||||||| |  ||||||||| | |||||||| ||||||||    
T  25352409 gaatgttagaagaaatggtaatgtgaaatctcatttttacccctgattttttaacaatattacaaaactaccatccacatagacatgtgtacaagagagg 25352508  T
Q  127 t 127  Q
    |    
T  25352509 t 25352509  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 22501958 - 22501846
Alignment:
Q  44 ggcacgtgaaatatcatttttacccttaactttttaacaatactacaaaattgtcatccacatgggcatgtgtataagagaggtgtaggaaagggtgtgt 143  Q
    |||||||||||| ||| |||||||| |  ||||||||||| | ||||||  || |||||||||||||| ||||||||||| |||  | ||||  ||||||    
T  22501958 ggcacgtgaaatctcaattttaccccttcctttttaacaaaattacaaagctgccatccacatgggcaggtgtataagaggggtacaagaaaaagtgtgt 22501859  T
Q  144 ctataaaacattt 156  Q
    |||| || |||||    
T  22501858 ctatgaatcattt 22501846  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 24768427 - 24768348
Alignment:
Q  44 ggcacgtgaaatatcatttttacccttaactttttaacaatactacaaaattgtcatccacatgggcatgtgtataagag 123  Q
    |||||||||||| ||| |||||||  |  ||||||||||| | ||||||  || |||||||||||||| |||||||||||    
T  24768427 ggcacgtgaaatctcaattttacctcttcctttttaacaaaattacaaagctgccatccacatgggcaggtgtataagag 24768348  T

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