View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14739_low_25 (Length: 293)
Name: NF14739_low_25
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14739_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 105 - 281
Target Start/End: Complemental strand, 47252828 - 47252652
Alignment:
| Q |
105 |
tagtgtttttcaaattttatacatcctattgtcctaggataagtttttagagaaatataaaatgaatagacatacatttgcaacatacaatgtatttttg |
204 |
Q |
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| T |
47252828 |
tagtgtttttcaaattttatacatcctattgtcctaggataagtttttagagaaatataaaatgaatagacatacatttgcaacatacaatgtatttttg |
47252729 |
T |
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| Q |
205 |
aagtgatgaatcaagaataacacacttttgaaacacttgtattcatctacattttatttttcatataaattgatatt |
281 |
Q |
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| T |
47252728 |
aagtgatgaatcaagaataacacacttttgaaacacttgtattcatctacattttatttttcatataaattgatatt |
47252652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 47252938 - 47252849
Alignment:
| Q |
20 |
gcttagatacttgaacctggatctctgtgcatatggttacttaattactcattttgtttggctatctcttttgatgctagtctggtagtg |
109 |
Q |
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| T |
47252938 |
gcttagatacttgaacctggatctctgtgcatatggttacttaattactcattttgtttggctatctcttttgatgctagtctggtagtg |
47252849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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