View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14739_low_26 (Length: 293)
Name: NF14739_low_26
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14739_low_26 |
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| [»] chr6 (5 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 6921906 - 6921633
Alignment:
| Q |
20 |
ctgccacaaggacaaaatctgaaacattggtgtcctttcgcaactatcccaagcccaggaaaaatgtttgcaacttcacgtttggttatgatatttcaat |
119 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6921906 |
ctgccacaaggacaaaatctgaaacattggtgtcttttcgcaactatcccaagcccaggaaaaatgtttgcaacttcacatttggttatgatatttcaat |
6921807 |
T |
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| Q |
120 |
agacacttacaagattgtgttcttatgtttgaaaagggatgatagcgaccttattgcaacggcagtaagagtttttactttgggtgataatgattggaga |
219 |
Q |
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| T |
6921806 |
agacacttacaagattgtgttcttatgtttgaaaagggatgatagcgaccttattgcaacggccgtaagagtttttactttgggtgataatgattggaga |
6921707 |
T |
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| Q |
220 |
gacattgattgtttgcctgtggtattggtgcgtcatccttttggtaagcatgtgcgaaatggcgtttatttgaa |
293 |
Q |
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| T |
6921706 |
gacattgattgtttgcctgtggtattggtgcgtcatccttttggtaagtatgtgcgaaatggcgtttatttgaa |
6921633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 6948433 - 6948163
Alignment:
| Q |
20 |
ctgccacaaggacaaaatctgaaacattggtgtcctttcgcaactatcccaagcccaggaaaaatgtttgcaacttcacgtttggttatgatatttcaat |
119 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||| ||||||| ||| | ||||||||||||| |||||| |
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| T |
6948433 |
ctgccacaaggacaaaatctgaaacattggtgtcttttcgcaactatcccgagcccaagaaaaatatttgcaagttcgcctttggttatgataattcaat |
6948334 |
T |
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| Q |
120 |
agacacttacaagattgtgttcttatgtttgaaaagggatgatagcgaccttattgcaacggcagtaagagtttttactttgggtgataatgattggaga |
219 |
Q |
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| T |
6948333 |
agacacttacaaggttgtgttgttatgtatgaaaatggatg---gcgaacttaatacaaccgcggttaaactttttactttgggtgataatgattggaga |
6948237 |
T |
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| Q |
220 |
gacattgattgtttgcctgtggtattggtgcgtcatccttttggtaagcatgtgcgaaatggcgtttatttgaa |
293 |
Q |
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| T |
6948236 |
gaaattgattgtttgcctgtggtagtggtgagtcatccttttggtaagtatgtgagagacggtgtttatttgaa |
6948163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 6955069 - 6954846
Alignment:
| Q |
20 |
ctgccacaaggacaaaatctgaaacattggtgtcctttcgcaactatcccaagcccaggaaaaatgtttgcaacttcacgtttggttatgatatttcaat |
119 |
Q |
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| T |
6955069 |
ctgccacaaggacaaagtctgaagcattattgtcttttcgcaattatgccaagga---gaaaaataactgcaagttcgcgtttggttatgataattcaac |
6954973 |
T |
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| Q |
120 |
agacacttacaagattgtgttcttatgtttgaaaagggatgatagcgaccttattgcaacggcagtaagagtttttactttgggtgataatgattggaga |
219 |
Q |
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| T |
6954972 |
agacacttacaagatggtgttgttatgtttgaaaagggatg---gtgagcttattgcaaccacggttaaagtttttactttgggtgataatgtttggaga |
6954876 |
T |
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| Q |
220 |
gacattgattgtttgcctgtggtattggtg |
249 |
Q |
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| T |
6954875 |
gatattgattgtttcccggtggaattggtg |
6954846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 6935763 - 6935533
Alignment:
| Q |
22 |
gccacaaggacaaaatctgaaacattggtgtcctttcgcaactatcccaagcccaggaaaaat------gtttgcaacttcacgtttggttatgatattt |
115 |
Q |
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| T |
6935763 |
gccacaaggacaaaatccgaagcattggtgtcttttcgcagtaatcccacgctcaataaaaatataaatgtttgcaacttcacttttggttatgataatt |
6935664 |
T |
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| Q |
116 |
caatagacacttacaagattgtgttcttatgtttgaaaagggatgatagcgaccttattgcaacggcagtaagagtttttactttgggtgataatgattg |
215 |
Q |
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||| ||||||||||||| | |||||||| ||||| ||||||| || ||||||||| ||| | ||||||||||||||||||||||||||||||| |
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| T |
6935663 |
caacagacacttacaagttggtgttcttcagtttggaaagggacga---cgaccttatgaaaaccgtgataagagtttttactttgggtgataatgattg |
6935567 |
T |
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| Q |
216 |
gagagacattgattgtttgcctgtggtattggtg |
249 |
Q |
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| T |
6935566 |
gagagacattgattgtttgcaagtggcattggtg |
6935533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 81 - 254
Target Start/End: Complemental strand, 6943434 - 6943264
Alignment:
| Q |
81 |
aaatgtttgcaacttcacgtttggttatgatatttcaatagacacttacaagattgtgttcttatgtttgaaaagggatgatagcgaccttattgcaacg |
180 |
Q |
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|||||||||||||||||| ||||||||||||| ||||| | ||||||||||| | ||||| || ||| | |||||| || ||||||||| ||| |
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| T |
6943434 |
aaatgtttgcaacttcacttttggttatgataattcaacaaacacttacaagttggtgttgttcagttcggaaagggtcga---cgaccttatgaaaacc |
6943338 |
T |
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| Q |
181 |
gcagtaagagtttttactttgggtgataatgattggagagacattgattgtttgcctgtggtattggtgcgtca |
254 |
Q |
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| T |
6943337 |
gtggtaagagtttttactttgggtgataatgattggagagacattgattgtttgcatgtggcattggtgtgtca |
6943264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 23 - 293
Target Start/End: Complemental strand, 1986508 - 1986238
Alignment:
| Q |
23 |
ccacaaggacaaaatctgaaacattggtgtcctttcgcaactatcccaagcccaggaaaaatgtttgcaacttcacgtttggttatgatatttcaataga |
122 |
Q |
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||||||||||||||| |||| |||||||||| |||||||||||||||||||||| ||||||| ||||||| ||| ||||||||||||||| ||||| ||| |
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| T |
1986508 |
ccacaaggacaaaatatgaagcattggtgtcttttcgcaactatcccaagcccaagaaaaatatttgcaagttcgcgtttggttatgataattcaacaga |
1986409 |
T |
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| Q |
123 |
cacttacaagattgtgttcttatgtttgaaaagggatgatagcgaccttattgcaacggcagtaagagtttttactttgggtgataatgattggagagac |
222 |
Q |
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| T |
1986408 |
cacttacaagattttgttgttatgtttgaaaagggatg---gtgagctgattacaaccgccgtaagagtttttactttgggttataatgattggagagaa |
1986312 |
T |
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| Q |
223 |
attgattgtttgcctgtggtattggtgcgtcatccttt---tggtaagcatgtgcgaaatggcgtttatttgaa |
293 |
Q |
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| T |
1986311 |
attgattgtttgcctgtggtagtggtgtgtcatccttttggtggtaagtatgtgagaaatggtgtttatttgaa |
1986238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 100 - 244
Target Start/End: Complemental strand, 15572386 - 15572242
Alignment:
| Q |
100 |
tttggttatgatatttcaatagacacttacaagattgtgttcttatgtttgaaaagggatgatagcgaccttattgcaacggcagtaagagtttttactt |
199 |
Q |
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||||||||||||| ||||| |||||||||||| | ||||| ||||||| ||||||||||| | ||||| ||||| || | | |||||||| ||||||| |
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| T |
15572386 |
tttggttatgataattcaaccgacacttacaaggtggtgttgttatgttggaaaagggatggtggcgacgttattacatccgtggtaagagtatttactt |
15572287 |
T |
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| Q |
200 |
tgggtgataatgattggagagacattgattgtttgcctgtggtat |
244 |
Q |
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| T |
15572286 |
tgggtgataacgtttggagagatattgattgttttcctggggtat |
15572242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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