View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14739_low_27 (Length: 291)
Name: NF14739_low_27
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14739_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 179 - 284
Target Start/End: Complemental strand, 1416320 - 1416215
Alignment:
| Q |
179 |
ctcataaaacgagtacaagaaaattaggtgaagttatatatannnnnnncaaagaattagggtttagaatttctctagcacaccaccatacatacacatt |
278 |
Q |
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| T |
1416320 |
ctcataaaacgagtacaagaaaattaggtgaagttatatatatttttttcaaagaattagggtttagaatttctctagcacaccaccatacatacacatt |
1416221 |
T |
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| Q |
279 |
catctc |
284 |
Q |
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| T |
1416220 |
cttctc |
1416215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 1416545 - 1416468
Alignment:
| Q |
1 |
aaccattctagttcagtaatattatttgttttgttcaaaactatagtaattaacattttcaatttatttagaaaaagg |
78 |
Q |
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| T |
1416545 |
aaccattcgaattcagtaatattatttgttttgttcaaaactatagtaattaacattttcaatttatttagaaaaagg |
1416468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 1416403 - 1416354
Alignment:
| Q |
131 |
aattgtaatttattttacaatcaatttagtatctctttaccttgtcagct |
180 |
Q |
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| T |
1416403 |
aattgtaatttattttacaatcaatttagtatctctttaccttgtcagct |
1416354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 14362253 - 14362311
Alignment:
| Q |
29 |
ttttgttcaaaactatagtaattaacattttcaatttatttagaaaaaggagaggatcc |
87 |
Q |
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| T |
14362253 |
ttttgttcaaagctatagtaattgacatttagattttatttaggaaatggagaggatcc |
14362311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 7593166 - 7593203
Alignment:
| Q |
34 |
ttcaaaactatagtaattaacattttcaatttatttag |
71 |
Q |
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| T |
7593166 |
ttcaaaactatagtaattaacatttccattttatttag |
7593203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 3971611 - 3971543
Alignment:
| Q |
19 |
atattatttgttttgttcaaaactatagtaattaacattttcaatttatttagaaaaaggagaggatcc |
87 |
Q |
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||||||||| ||| || |||| |||||||||| |||||| || ||||||||||||| |||||||||| |
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| T |
3971611 |
atattatttatttagtaaaaaaatatagtaattgacatttccattttatttagaaaattgagaggatcc |
3971543 |
T |
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