View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14739_low_28 (Length: 274)
Name: NF14739_low_28
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14739_low_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 23152883 - 23152625
Alignment:
| Q |
1 |
ttcacattatgagttcatcatcatcaattaaattattggtttttggtagagaagataataccccgagtgcataaaatatctgccacgtttatggatcggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||||||| |||||||| |||| |
|
|
| T |
23152883 |
ttcacattatgagttcatcatcatcaattaaattattggtttttggtagagaagataataccctgcgagaataaaatatctgccacttttatggaacggg |
23152784 |
T |
|
| Q |
101 |
tagcaatttatcacactatcgacaacaacttgttgacttaaattacaaaaatattatccacacgtttgtgcactaatagagtaaagtactatggattgtt |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23152783 |
tagcaatttatcacactattgacaacaacttgttgacttaa-tcacaaaaatattatccacacgtttgtgcactaatagagtaaagtactatggattgtt |
23152685 |
T |
|
| Q |
201 |
acaaaattgtactagtgaccatagtttcatttatgcttttggttcaaaataccaaagaat |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23152684 |
acaaaattgtactagtgaccatagtttcatttatgcttttggttcaaaataccaaagaat |
23152625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University