View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14739_low_29 (Length: 265)
Name: NF14739_low_29
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14739_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 45303545 - 45303313
Alignment:
| Q |
19 |
aaatactagtagtactcatcaaaatgaatctgatcaaacccttcaacttttcccaataaggaatggagatcatggatgcactgnnnnnnnnnnnnnnnnn |
118 |
Q |
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| T |
45303545 |
aaatactagtagtactcatcaaaatgaatctgatcaaacccttcaacttttcccaataaggaatggagatcatggatgcactgatcatcatcatcatcat |
45303446 |
T |
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| Q |
119 |
nnnaacattatcaaagagacacagatatcagcttcagcaatcaatgcacccaaccagtttattgagtttcttcccttgaaaaactgattagaaaagactt |
218 |
Q |
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| T |
45303445 |
---aacattatcaaagagacacagatatcagcttcagcaatcaatgcacccaaccagtttattgagtttcttcccttgaaaaactgattagaaaagactt |
45303349 |
T |
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| Q |
219 |
tgcttttttgtttgttaggtgttggatattcttgga |
254 |
Q |
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||||||||||||||||||||||||||| || ||||| |
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| T |
45303348 |
tgcttttttgtttgttaggtgttggattttgttgga |
45303313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 45150317 - 45150267
Alignment:
| Q |
44 |
gaatctgatcaaacccttcaacttttcccaataaggaatggagatcatgga |
94 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45150317 |
gaatctgaccaaacccttcaacttttcccaataaggaatggaagtcatgga |
45150267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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