View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14739_low_30 (Length: 265)

Name: NF14739_low_30
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14739_low_30
NF14739_low_30
[»] chr2 (13 HSPs)
chr2 (80-259)||(7168567-7168746)
chr2 (80-259)||(7174250-7174429)
chr2 (9-82)||(7168397-7168470)
chr2 (80-251)||(11237696-11237867)
chr2 (80-251)||(7199855-7200026)
chr2 (179-256)||(7156168-7156245)
chr2 (186-256)||(7160737-7160807)
chr2 (177-245)||(6538843-6538911)
chr2 (180-244)||(33020323-33020387)
chr2 (180-251)||(33038163-33038234)
chr2 (202-264)||(36577355-36577418)
chr2 (27-61)||(11237995-11238029)
chr2 (185-251)||(33026660-33026726)
[»] chr3 (26 HSPs)
chr3 (180-251)||(4142111-4142182)
chr3 (201-251)||(4157942-4157992)
chr3 (201-251)||(2442042-2442092)
chr3 (186-251)||(771482-771547)
chr3 (186-251)||(2456252-2456317)
chr3 (202-251)||(3754603-3754652)
chr3 (187-251)||(23197015-23197079)
chr3 (201-251)||(1007464-1007514)
chr3 (201-251)||(1022492-1022542)
chr3 (201-251)||(2696730-2696780)
chr3 (205-251)||(9608346-9608392)
chr3 (205-251)||(13498227-13498273)
chr3 (202-251)||(2459278-2459327)
chr3 (186-251)||(2631360-2631425)
chr3 (203-251)||(1891064-1891112)
chr3 (180-251)||(9587162-9587233)
chr3 (201-251)||(803216-803266)
chr3 (201-243)||(7432052-7432094)
chr3 (203-244)||(1438005-1438046)
chr3 (207-251)||(997579-997623)
chr3 (207-251)||(1013969-1014013)
chr3 (203-251)||(2644362-2644410)
chr3 (203-251)||(2659152-2659200)
chr3 (203-251)||(7324431-7324479)
chr3 (203-251)||(37753345-37753393)
chr3 (203-251)||(43991963-43992011)
[»] scaffold0044 (1 HSPs)
scaffold0044 (180-250)||(89147-89217)
[»] chr4 (2 HSPs)
chr4 (201-254)||(22672125-22672178)
chr4 (202-248)||(55419788-55419834)
[»] scaffold0015 (2 HSPs)
scaffold0015 (204-251)||(32330-32377)
scaffold0015 (204-251)||(40382-40429)
[»] chr6 (11 HSPs)
chr6 (201-252)||(370783-370834)
chr6 (185-251)||(19119066-19119132)
chr6 (185-251)||(19126360-19126426)
chr6 (201-250)||(176338-176387)
chr6 (201-250)||(7564749-7564798)
chr6 (205-250)||(9703888-9703933)
chr6 (205-250)||(9819831-9819876)
chr6 (203-251)||(24417486-24417534)
chr6 (201-244)||(1442106-1442149)
chr6 (205-250)||(9825517-9825562)
chr6 (202-250)||(1470922-1470970)
[»] chr5 (7 HSPs)
chr5 (201-251)||(23766860-23766910)
chr5 (201-251)||(23816708-23816758)
chr5 (202-251)||(11081816-11081865)
chr5 (199-251)||(3181720-3181772)
chr5 (205-251)||(20292998-20293044)
chr5 (201-251)||(23769644-23769694)
chr5 (201-251)||(23819492-23819542)
[»] chr7 (3 HSPs)
chr7 (201-250)||(3927063-3927112)
chr7 (204-251)||(1421170-1421217)
chr7 (200-258)||(24723350-24723408)
[»] chr1 (3 HSPs)
chr1 (185-250)||(51381437-51381502)
chr1 (205-256)||(24629213-24629264)
chr1 (213-251)||(23896147-23896185)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 80 - 259
Target Start/End: Original strand, 7168567 - 7168746
Alignment:
Q  80 catctctagaattgtaaacaaccaactcagcttgatacttgagcaacacttggtcatcctcagtaagataaagtgccttggtataaggacatgacccaac 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7168567 catctctagaattgtaaacaaccaactcagcttgatacttgagcaacacttggtcatcctcagtaagataaagtgccttggtataaggacatgacccaac 7168666  T
Q  180 atctcccatgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaacgtctgaaa 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7168667 atctcccatgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaacgtctgaaa 7168746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 80 - 259
Target Start/End: Original strand, 7174250 - 7174429
Alignment:
Q  80 catctctagaattgtaaacaaccaact-cagcttgatacttgagcaacacttggtcatcctcagtaagataaagtgccttggtataaggacatgacccaa 178  Q
    ||||||||||||||||||||||||||| || | | |||||  |||| |||||| |||||||||  || |||||||||||| |||||||||   || ||||    
T  7174250 catctctagaattgtaaacaaccaacttcatcat-atactctagcagcacttgatcatcctcataaacataaagtgcctttgtataaggatcagaaccaa 7174348  T
Q  179 catctcccatgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaacgtctgaaa 259  Q
    || |||||||||||||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||| || |||||||    
T  7174349 cacctcccatgtaaggaacacggaacaatctagtccaagaatcttgatttccatattccttcataagccagacatctgaaa 7174429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 7168397 - 7168470
Alignment:
Q  9 aaaaaataatccataaaccttcataaacctcatgcacaagtgacgtaacatagtatctacattattacatgcat 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7168397 aaaaaataatccataaaccttcataaacctcatgcacaagtgacgtaacatagtatctacattattacatgcat 7168470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 80 - 251
Target Start/End: Complemental strand, 11237867 - 11237696
Alignment:
Q  80 catctctagaattgtaaacaaccaactcagcttgatacttgagcaacacttggtcatcctcagtaagataaagtgccttggtataaggacatgacccaac 179  Q
    ||||||||||||||||||| ||||||||    |||| ||  |||| ||| || ||||||||||||| ||||||||| ||||||||||||||   ||||||    
T  11237867 catctctagaattgtaaacgaccaactcgaactgattctccagcagcacctgatcatcctcagtaacataaagtgcattggtataaggacaacgcccaac 11237768  T
Q  180 atctcccatgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    ||  || ||||||||||| |||||||||||||||||||  ||  |||||||||| |||| ||||||||||||    
T  11237767 attccctatgtaaggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaac 11237696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 80 - 251
Target Start/End: Original strand, 7199855 - 7200026
Alignment:
Q  80 catctctagaattgtaaacaaccaactcagcttgatacttgagcaacacttggtcatcctcagtaagataaagtgccttggtataaggacatgacccaac 179  Q
    |||| ||||||||||||| ||||||||  |  ||| |||  |||| |||||| |||||||||  || ||||| |||||||||||||||||  || |||||    
T  7199855 catccctagaattgtaaagaaccaactttgactgacactctagcagcacttgatcatcctcataaacataaaatgccttggtataaggaccagaaccaac 7199954  T
Q  180 atctcccatgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    | || ||||||||||||| ||||||||| ||| ||||||||  | ||||||| | |||||||||| ||||||    
T  7199955 accttccatgtaaggaacacggaacaatctagcccaagaattttcatttccaaactccttcataacccaaac 7200026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 7156168 - 7156245
Alignment:
Q  179 catctcccatgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaacgtctg 256  Q
    ||||||||||||||||||| ||||||||||||| ||||||||| | ||||||||| ||||||||||||||||| ||||    
T  7156168 catctcccatgtaaggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaacatctg 7156245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 7160737 - 7160807
Alignment:
Q  186 catgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaacgtctg 256  Q
    ||||| |||||  ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  7160737 catgtgaggaagacggaacaatttagtccaagaatcattatttccatactccttcataagccaaacatctg 7160807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 6538911 - 6538843
Alignment:
Q  177 aacatctcccatgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataag 245  Q
    |||| ||||||||| || ||| | ||||||||||||||||||||| ||||||||||| |||||||||||    
T  6538911 aacacctcccatgttagaaacactgaacaatttagtccaagaatctttatttccatactccttcataag 6538843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 33020387 - 33020323
Alignment:
Q  180 atctcccatgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataa 244  Q
    |||| ||||||||||||| ||| ||||| |||||||||| |  ||||||||||||||||||||||    
T  33020387 atcttccatgtaaggaacacggtacaatctagtccaagactttttatttccatattccttcataa 33020323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 33038234 - 33038163
Alignment:
Q  180 atctcccatgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||| ||||||||||||| ||| ||||| |||||||||| |  || ||||||||||||||||||| ||||||    
T  33038234 atcttccatgtaaggaacacggtacaatctagtccaagactttttgtttccatattccttcataatccaaac 33038163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 36577418 - 36577355
Alignment:
Q  202 aacaatttagtccaagaatcgttatttccatattccttcataagccaaacgtc-tgaaatgatg 264  Q
    ||||||||| ||||||| || |||||||||||||||||||||| |||||| || ||||||||||    
T  36577418 aacaatttaatccaagactctttatttccatattccttcataatccaaacatcgtgaaatgatg 36577355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 11238029 - 11237995
Alignment:
Q  27 cttcataaacctcatgcacaagtgacgtaacatag 61  Q
    |||||||||||||||||||||||||| ||||||||    
T  11238029 cttcataaacctcatgcacaagtgacataacatag 11237995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 33026726 - 33026660
Alignment:
Q  185 ccatgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||| |||||| ||| ||||| |||||||||| |  ||||||||||||| |||||||| ||||||    
T  33026726 ccatgtgaggaacacggtacaatctagtccaagactttttatttccatattgcttcataacccaaac 33026660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 4142111 - 4142182
Alignment:
Q  180 atctcccatgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    ||||| |||||||||||    |||||||||||||||||| || |||||||||||||||||||||||||||||    
T  4142111 atctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaac 4142182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 4157942 - 4157992
Alignment:
Q  201 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||    
T  4157942 gaacaatttagtccaagactctttatttccatattccttcataagccaaac 4157992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 2442092 - 2442042
Alignment:
Q  201 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| ||||||    
T  2442092 gaacaatttagtccaagaatctttatttccatactccttcataatccaaac 2442042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 771482 - 771547
Alignment:
Q  186 catgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    ||||||||||||  || |||||||||||||||| ||  ||||||||||||||||||||| ||||||    
T  771482 catgtaaggaacgtggtacaatttagtccaagagtctgtatttccatattccttcataacccaaac 771547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 2456317 - 2456252
Alignment:
Q  186 catgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||||||||   || |||||||||||||||| || |||||||||||||||||||||| ||||||    
T  2456317 catgtaaggaatatggtacaatttagtccaagagtctttatttccatattccttcataacccaaac 2456252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 3754652 - 3754603
Alignment:
Q  202 aacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    ||||||||||||||||| || |||||||||||||||||||||| ||||||    
T  3754652 aacaatttagtccaagactctttatttccatattccttcataacccaaac 3754603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 23197079 - 23197015
Alignment:
Q  187 atgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    ||||||||||  || ||||||||||||||||| || | |||||||||||||||||| ||||||||    
T  23197079 atgtaaggaatacgaaacaatttagtccaagattcttcatttccatattccttcatcagccaaac 23197015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 1007514 - 1007464
Alignment:
Q  201 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    ||||||||||||||| || ||||||||||||||||||||||| | ||||||    
T  1007514 gaacaatttagtccaggactcgttatttccatattccttcattacccaaac 1007464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 1022542 - 1022492
Alignment:
Q  201 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    ||||||||||||||| || ||||||||||||||||||||||| | ||||||    
T  1022542 gaacaatttagtccatgactcgttatttccatattccttcattacccaaac 1022492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 2696730 - 2696780
Alignment:
Q  201 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||||||| ||||||| || |||||||||||||||||||||| ||||||    
T  2696730 gaacaatttaatccaagactctttatttccatattccttcataatccaaac 2696780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 9608346 - 9608392
Alignment:
Q  205 aatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||||||||||||||  ||||||||||||||||||||| ||||||    
T  9608346 aatttagtccaagaatctatatttccatattccttcataacccaaac 9608392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 13498273 - 13498227
Alignment:
Q  205 aatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||||||||||| || |||||||||||||||||||||| ||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaac 13498227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 2459327 - 2459278
Alignment:
Q  202 aacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||||| |||||||| || |||||||||||||||||||||| ||||||    
T  2459327 aacaattttgtccaagactctttatttccatattccttcataatccaaac 2459278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 2631425 - 2631360
Alignment:
Q  186 catgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    ||||| |||||| | | |||||||||||||||| || | |||||||||||||||||||| ||||||    
T  2631425 catgtcaggaacactgcacaatttagtccaagactcttgatttccatattccttcataatccaaac 2631360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 1891064 - 1891112
Alignment:
Q  203 acaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||||||||||||| || |||||||||| ||||||||||| ||||||    
T  1891064 acaatttagtccaagagtctttatttccatgttccttcataatccaaac 1891112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 9587162 - 9587233
Alignment:
Q  180 atctcccatgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||||||||||||||    | ||||||| |||||||  || |||||||||||||||||||||| ||||||    
T  9587162 atctcccatgtaaggaatattgtacaattttgtccaaggctctttatttccatattccttcataatccaaac 9587233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 803216 - 803266
Alignment:
Q  201 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||| ||||||||||| || |||||||||||||| ||||||| ||||||    
T  803216 gaacaacttagtccaagactctttatttccatattctttcataacccaaac 803266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 7432052 - 7432094
Alignment:
Q  201 gaacaatttagtccaagaatcgttatttccatattccttcata 243  Q
    ||||||||||||||| || || |||||||||||||||||||||    
T  7432052 gaacaatttagtccacgattctttatttccatattccttcata 7432094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 1438046 - 1438005
Alignment:
Q  203 acaatttagtccaagaatcgttatttccatattccttcataa 244  Q
    |||||||| ||||||| || ||||||||||||||||||||||    
T  1438046 acaatttaatccaagagtctttatttccatattccttcataa 1438005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 997623 - 997579
Alignment:
Q  207 tttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||||||||| || |||||||||||||||||||| | ||||||    
T  997623 tttagtccaagactctttatttccatattccttcattacccaaac 997579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 1014013 - 1013969
Alignment:
Q  207 tttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||||||||| || |||||||||||||||||||| | ||||||    
T  1014013 tttagtccaagactctttatttccatattccttcattacccaaac 1013969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 2644362 - 2644410
Alignment:
Q  203 acaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||||||||||||| || | ||||||||| |||||||||| ||||||    
T  2644362 acaatttagtccaagactcttgatttccatactccttcataatccaaac 2644410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 2659152 - 2659200
Alignment:
Q  203 acaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||||||||||||| || | ||||||||| |||||||||| ||||||    
T  2659152 acaatttagtccaagactcttgatttccatactccttcataatccaaac 2659200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 7324431 - 7324479
Alignment:
Q  203 acaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||||||||||||| || |||||||| || |||||||||| ||||||    
T  7324431 acaatttagtccaagactctttatttccgtagtccttcataatccaaac 7324479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 37753345 - 37753393
Alignment:
Q  203 acaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||||||||||||| || || ||||||||||||| ||||| ||||||    
T  37753345 acaatttagtccaagactctttctttccatattcctccataatccaaac 37753393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 43992011 - 43991963
Alignment:
Q  203 acaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    ||||||| |||||||| ||  ||||||||||||||||||||| ||||||    
T  43992011 acaatttggtccaagactctatatttccatattccttcataatccaaac 43991963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 89217 - 89147
Alignment:
Q  180 atctcccatgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaa 250  Q
    |||| |||||||||||||   | |||||||||||||||| || |||||||||||||||||||||| |||||    
T  89217 atcttccatgtaaggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaa 89147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 22672125 - 22672178
Alignment:
Q  201 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaacgtc 254  Q
    |||||||||||||||||| || |||||||||||||||||||| | |||||||||    
T  22672125 gaacaatttagtccaagattccttatttccatattccttcattacccaaacgtc 22672178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 55419834 - 55419788
Alignment:
Q  202 aacaatttagtccaagaatcgttatttccatattccttcataagcca 248  Q
    |||||||||||||||||||| |||||||||||  |||||||||||||    
T  55419834 aacaatttagtccaagaatctttatttccataaaccttcataagcca 55419788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 251
Target Start/End: Original strand, 32330 - 32377
Alignment:
Q  204 caatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    ||||||| ||||||| || |||||||||||||||||||||||||||||    
T  32330 caatttaatccaagagtctttatttccatattccttcataagccaaac 32377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 251
Target Start/End: Original strand, 40382 - 40429
Alignment:
Q  204 caatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    ||||||| ||||||| || |||||| ||||||||||||||||||||||    
T  40382 caatttaatccaagagtctttattttcatattccttcataagccaaac 40429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 370783 - 370834
Alignment:
Q  201 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaacg 252  Q
    ||||||||||||||||||||| ||||||||||| | |||||||| |||||||    
T  370783 gaacaatttagtccaagaatctttatttccataattcttcataacccaaacg 370834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 19119132 - 19119066
Alignment:
Q  185 ccatgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||||||||||  | ||||||||||||||||| || | |||||||||||||||||| | ||||||    
T  19119132 ccatgtaaggaacatgaaacaatttagtccaagactcttcatttccatattccttcatcaaccaaac 19119066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 19126426 - 19126360
Alignment:
Q  185 ccatgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||||||||||  | ||||||||||||||||| || | |||||||||||||||||| | ||||||    
T  19126426 ccatgtaaggaacatgaaacaatttagtccaagactcttcatttccatattccttcatcaaccaaac 19126360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 176387 - 176338
Alignment:
Q  201 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaa 250  Q
    ||||||||||||||||||||| ||||||||||| || |||||| ||||||    
T  176387 gaacaatttagtccaagaatctttatttccataatcattcatacgccaaa 176338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 7564749 - 7564798
Alignment:
Q  201 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaa 250  Q
    ||||||||||||||||||||| || |||||||| |||||||||| |||||    
T  7564749 gaacaatttagtccaagaatccttgtttccataatccttcataacccaaa 7564798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 9703888 - 9703933
Alignment:
Q  205 aatttagtccaagaatcgttatttccatattccttcataagccaaa 250  Q
    |||||||||||| ||||  |||||||||||||||||||||||||||    
T  9703888 aatttagtccaaaaatctctatttccatattccttcataagccaaa 9703933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 9819831 - 9819876
Alignment:
Q  205 aatttagtccaagaatcgttatttccatattccttcataagccaaa 250  Q
    |||||||||||||| ||  |||||||||||||||||||||||||||    
T  9819831 aatttagtccaagagtctctatttccatattccttcataagccaaa 9819876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 24417486 - 24417534
Alignment:
Q  203 acaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||||||||||||| || |||||||||||||| ||||||| ||||||    
T  24417486 acaatttagtccaagattctttatttccatattctttcataatccaaac 24417534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 1442106 - 1442149
Alignment:
Q  201 gaacaatttagtccaagaatcgttatttccatattccttcataa 244  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||    
T  1442106 gaacaatttagtccaagaatctttaattccataatccttcataa 1442149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 9825517 - 9825562
Alignment:
Q  205 aatttagtccaagaatcgttatttccatattccttcataagccaaa 250  Q
    |||||||||||||| |   |||||||||||||||||||||||||||    
T  9825517 aatttagtccaagagtttctatttccatattccttcataagccaaa 9825562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 1470922 - 1470970
Alignment:
Q  202 aacaatttagtccaagaatcgttatttccatattccttcataagccaaa 250  Q
    |||||||||| ||||||||| ||||||||||| || ||||||| |||||    
T  1470922 aacaatttagaccaagaatctttatttccataatctttcataacccaaa 1470970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 23766860 - 23766910
Alignment:
Q  201 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||||||||||||||| || |||||||||||||| ||||||| ||||||    
T  23766860 gaacaatttagtccaagactctttatttccatattctttcataatccaaac 23766910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 23816708 - 23816758
Alignment:
Q  201 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||||||||||||||| || |||||||||||||| ||||||| ||||||    
T  23816708 gaacaatttagtccaagactctttatttccatattctttcataatccaaac 23816758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 11081865 - 11081816
Alignment:
Q  202 aacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    ||||||||||||||||| || ||||||||||| |||||||||| ||||||    
T  11081865 aacaatttagtccaagactctttatttccatactccttcataacccaaac 11081816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 3181772 - 3181720
Alignment:
Q  199 cggaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||| ||||||| ||||||| || | |||||||||||||||||||||||||||    
T  3181772 cggatcaatttaatccaagactcttcatttccatattccttcataagccaaac 3181720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 20293044 - 20292998
Alignment:
Q  205 aatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||||||||||| || ||| |||||||||||||||||| ||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaac 20292998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 23769644 - 23769694
Alignment:
Q  201 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    ||||||||||||||||||  | ||||| |||||||||||||||| ||||||    
T  23769644 gaacaatttagtccaagacgctttattcccatattccttcataatccaaac 23769694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 23819492 - 23819542
Alignment:
Q  201 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    ||||||||||||||||||  | ||||| |||||||||||||||| ||||||    
T  23819492 gaacaatttagtccaagacgctttattcccatattccttcataatccaaac 23819542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 3927112 - 3927063
Alignment:
Q  201 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaa 250  Q
    ||||||||||||||||||||  ||||||||||| |||||||||| |||||    
T  3927112 gaacaatttagtccaagaatttttatttccataatccttcataacccaaa 3927063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 251
Target Start/End: Original strand, 1421170 - 1421217
Alignment:
Q  204 caatttagtccaagaatcgttatttccatattccttcataagccaaac 251  Q
    ||||||| ||||||| || |||||||| ||||||||||||||||||||    
T  1421170 caatttaatccaagactctttatttccgtattccttcataagccaaac 1421217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 24723408 - 24723350
Alignment:
Q  200 ggaacaatttagtccaagaatcgttatttccatattccttcataagccaaacgtctgaa 258  Q
    ||||||||||||||||||| ||  |||||  ||| ||||||||||||||||| ||||||    
T  24723408 ggaacaatttagtccaagattcactatttatatactccttcataagccaaacctctgaa 24723350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 51381437 - 51381502
Alignment:
Q  185 ccatgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaa 250  Q
    ||||||||||||  | |||||||||||||||||| || | |||||||||||| ||||||| |||||    
T  51381437 ccatgtaaggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaa 51381502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 24629213 - 24629264
Alignment:
Q  205 aatttagtccaagaatcgttatttccatattccttcataagccaaacgtctg 256  Q
    |||||| ||||||| || |||||||| |||||||||||||||||||| ||||    
T  24629213 aatttaatccaagactctttatttccgtattccttcataagccaaacatctg 24629264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 23896147 - 23896185
Alignment:
Q  213 ccaagaatcgttatttccatattccttcataagccaaac 251  Q
    |||||| || |||||||||||||||||||||||||||||    
T  23896147 ccaagactctttatttccatattccttcataagccaaac 23896185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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