View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14739_low_31 (Length: 257)

Name: NF14739_low_31
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14739_low_31
NF14739_low_31
[»] chr6 (7 HSPs)
chr6 (160-252)||(3535884-3535976)
chr6 (160-252)||(3542095-3542187)
chr6 (160-252)||(30052051-30052145)
chr6 (160-252)||(30049764-30049858)
chr6 (164-251)||(29340955-29341043)
chr6 (169-224)||(3565596-3565651)
chr6 (172-230)||(2939862-2939919)
[»] chr3 (9 HSPs)
chr3 (160-241)||(43306831-43306912)
chr3 (160-251)||(3063886-3063977)
chr3 (160-251)||(43304109-43304198)
chr3 (160-251)||(53012875-53012966)
chr3 (160-241)||(3069034-3069115)
chr3 (173-251)||(41218666-41218744)
chr3 (172-230)||(25857652-25857710)
chr3 (168-230)||(39913399-39913461)
chr3 (167-223)||(45168470-45168526)
[»] chr4 (5 HSPs)
chr4 (167-251)||(24667543-24667628)
chr4 (178-241)||(22691178-22691241)
chr4 (174-223)||(6659507-6659556)
chr4 (165-251)||(22716516-22716598)
chr4 (165-251)||(22988619-22988701)
[»] chr2 (10 HSPs)
chr2 (164-233)||(15129271-15129340)
chr2 (160-241)||(2155816-2155897)
chr2 (160-251)||(2165772-2165863)
chr2 (160-233)||(22011281-22011354)
chr2 (164-252)||(33655479-33655569)
chr2 (160-252)||(27952465-27952565)
chr2 (160-252)||(27956301-27956401)
chr2 (164-241)||(31633957-31634035)
chr2 (168-252)||(22264292-22264377)
chr2 (160-241)||(31636184-31636268)
[»] chr8 (11 HSPs)
chr8 (172-251)||(23573444-23573523)
chr8 (160-252)||(42890246-42890340)
chr8 (160-252)||(22926795-22926887)
chr8 (160-252)||(6845186-6845278)
chr8 (160-252)||(22921997-22922091)
chr8 (173-251)||(23570449-23570524)
chr8 (164-230)||(22512218-22512284)
chr8 (160-230)||(42891835-42891911)
chr8 (160-252)||(37189715-37189809)
chr8 (164-252)||(18180830-18180919)
chr8 (160-195)||(18468565-18468600)
[»] chr7 (7 HSPs)
chr7 (160-252)||(4303298-4303392)
chr7 (164-239)||(1220594-1220669)
chr7 (160-230)||(4300405-4300475)
chr7 (164-241)||(859315-859392)
chr7 (164-241)||(1217319-1217396)
chr7 (160-220)||(13882865-13882925)
chr7 (160-220)||(13886367-13886427)
[»] chr1 (4 HSPs)
chr1 (171-241)||(13441758-13441828)
chr1 (161-230)||(50857615-50857684)
chr1 (160-241)||(13444147-13444225)
chr1 (160-203)||(8931073-8931116)
[»] scaffold0110 (2 HSPs)
scaffold0110 (160-252)||(45409-45503)
scaffold0110 (160-252)||(46851-46945)
[»] chr5 (3 HSPs)
chr5 (164-252)||(40778933-40779023)
chr5 (164-252)||(21849118-21849207)
chr5 (169-229)||(19677301-19677361)


Alignment Details
Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 3535884 - 3535976
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaatattcttcgagat 252  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||    
T  3535884 ttttggcccacgggtttgttatttctttcactatataagcagaacttatgcagcctaagaggcacacttttattcattaataatattcgagat 3535976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 3542095 - 3542187
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaatattcttcgagat 252  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||    
T  3542095 ttttggcccacgggtttgttatttctttcactatataagcagaacttatgcagcctaagaggcacacttttattcattaataatattcgagat 3542187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 30052051 - 30052145
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacac--ttttattcattaatattcttcgagat 252  Q
    |||||||| ||||||||||||||||||||| |||||||||| |||||||| ||| |||||| |||||  ||||||||||||||| | ||||||||    
T  30052051 ttttggcctacgggtttgttatttctttcactatataagcaaaacttatgcagcttaagagacacacttttttattcattaataatattcgagat 30052145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 30049764 - 30049858
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacac--ttttattcattaatattcttcgagat 252  Q
    |||||||| ||||||||||||||||||||| |||||||||| |||||||  ||| |||||| |||||  ||||||||||||||| | ||||||||    
T  30049764 ttttggcctacgggtttgttatttctttcactatataagcaaaacttattcagcttaagagacacacttttttattcattaataatattcgagat 30049858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 29341043 - 29340955
Alignment:
Q  164 ggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacac-ttttattcattaatattcttcgaga 251  Q
    |||||||||||||||||||||  ||| ||||||||||||||||||| |||||||||   |||| ||||||||||||||| | |||||||    
T  29341043 ggcccacgggtttgttatttcaatcactatataagcagaacttatgcagcctaagacaaacactttttattcattaataatattcgaga 29340955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 3565596 - 3565651
Alignment:
Q  169 acgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcac 224  Q
    |||||||||||||||| || | ||| ||| |||||||||||||||| |||||||||    
T  3565596 acgggtttgttatttcatttagtatttaaacagaacttatgtagccaaagaggcac 3565651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 2939919 - 2939862
Alignment:
Q  172 ggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacactttt 230  Q
    ||||| |||||||||| | ||| ||||||||||||||| ||||||||||| ||||||||    
T  2939919 ggtttattatttcttttagtatttaagcagaacttatgcagcctaagagg-acactttt 2939862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 43306912 - 43306831
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaata 241  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43306912 ttttggcccacggttttgttatttctttcactatataagcagaacttatgtagcctaagaggcacacttttattcattaata 43306831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 3063977 - 3063886
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaatattcttcgaga 251  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||| | |||||||    
T  3063977 ttttggcccacgggtttgttatttctttcactatataagcataacttatgtagcctaagaggtacacttttattcattaataatattcgaga 3063886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 43304198 - 43304109
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaatattcttcgaga 251  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||| | |||||||    
T  43304198 ttttggcccacgggtttgttatttctttcactatataagcagaacttatgtagcctaagag--acacttttattcattaataatattcgaga 43304109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 53012875 - 53012966
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaatattcttcgaga 251  Q
    |||| ||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| | |||||||    
T  53012875 ttttagcccacgggtttgttatttctttcactatataagcataactaatgtagcctaagaggcacacttttattcattaataatattcgaga 53012966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 3069115 - 3069034
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaata 241  Q
    ||||||| |||| ||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  3069115 ttttggcacacgagtttgttatttctttcactatataagcataacttatgtagcctaagatgcacacttttattcattaata 3069034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 41218666 - 41218744
Alignment:
Q  173 gtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaatattcttcgaga 251  Q
    ||||||||||||||| | ||| ||||||||||||||| |||||||||| |||||||||||||| ||||| | |||||||    
T  41218666 gtttgttatttcttttagtatttaagcagaacttatggagcctaagagacacacttttattcaataataatattcgaga 41218744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 25857652 - 25857710
Alignment:
Q  172 ggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacactttt 230  Q
    |||||||||||||||| | ||| |||||| ||||||||||||||||||| |||||||||    
T  25857652 ggtttgttatttcttttagtatttaagcataacttatgtagcctaagagacacactttt 25857710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 39913461 - 39913399
Alignment:
Q  168 cacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacactttt 230  Q
    |||||||||||||||||||| | ||| ||| ||||||||||| ||||||||||||||| ||||    
T  39913461 cacgggtttgttatttcttttagtatttaaacagaacttatgcagcctaagaggcacattttt 39913399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 45168526 - 45168470
Alignment:
Q  167 ccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggca 223  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||| || ||||||||||    
T  45168526 ccacgagtttgttatttctttcactatataagcagaagttatgcagactaagaggca 45168470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 24667543 - 24667628
Alignment:
Q  167 ccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacactttta-ttcattaatattcttcgaga 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||    
T  24667543 ccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttatttcattaataatattcgaga 24667628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 22691178 - 22691241
Alignment:
Q  178 ttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaata 241  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22691178 ttatttctttcactatataagcagaacttatgtagcctaagaggcacacttttattcattaata 22691241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 6659556 - 6659507
Alignment:
Q  174 tttgttatttctttcattatataagcagaacttatgtagcctaagaggca 223  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6659556 tttgttatttctttcactatataagcagaacttatgtagcctaagaggca 6659507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 22716516 - 22716598
Alignment:
Q  165 gcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaatattcttcgaga 251  Q
    |||||||| ||||||||||||||   || |||| ||||||||||||||| ||||||||||||||||||||||||||| | |||||||    
T  22716516 gcccacggatttgttatttcttt---tacataaccagaacttatgtagc-taagaggcacacttttattcattaataatattcgaga 22716598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 22988701 - 22988619
Alignment:
Q  165 gcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaatattcttcgaga 251  Q
    |||||| | ||||||||||||||   || |||| ||||||||||||||| ||||||||||||||||||||||||||| | |||||||    
T  22988701 gcccacagatttgttatttcttt---tacataaccagaacttatgtagc-taagaggcacacttttattcattaataatattcgaga 22988619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 15129271 - 15129340
Alignment:
Q  164 ggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttatt 233  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15129271 ggcccacgggtttgttatttctttcactatataagcagaacttatgtagcctaagaggcacacttttatt 15129340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 2155816 - 2155897
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaata 241  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||| |||||    
T  2155816 ttttggcccacgtgtttgttatttctttcactatataagcagaacttatgcagcctaagagacacacttttattcaataata 2155897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 2165772 - 2165863
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaatattcttcgaga 251  Q
    |||||||||||| ||||||||||||||||| |||||||| |||||||||| |||||||||| |||| ||||||||||||||| | |||||||    
T  2165772 ttttggcccacgagtttgttatttctttcactatataaggagaacttatgcagcctaagagacacatttttattcattaataatattcgaga 2165863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 22011281 - 22011354
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttatt 233  Q
    ||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||| |  |||||||||    
T  22011281 ttttggcccacgggtctgttatttctttcactatataagcaaaacttatgtagcctaagagaccgacttttatt 22011354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 33655479 - 33655569
Alignment:
Q  164 ggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacactttt--attcattaatattcttcgagat 252  Q
    |||||||||||||||||||||||||| |||||||| |||||  || |||||||||||||||||||||  ||||| ||| ||| ||||||||    
T  33655479 ggcccacgggtttgttatttctttcactatataaggagaaccaatttagcctaagaggcacactttttcattcaataaaattattcgagat 33655569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 27952565 - 27952465
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattat------ataagcagaacttatgtagcctaagaggcacactttt--attcattaatattcttcgaga 251  Q
    |||||||||||||||||||||||||| ||| |||      |||||||||||||||||||||||||||||||||||||  ||||| ||| ||| |||||||    
T  27952565 ttttggcccacgggtttgttatttctatcactatcactatataagcagaacttatgtagcctaagaggcacactttttgattcaataaaattattcgaga 27952466  T
Q  252 t 252  Q
    |    
T  27952465 t 27952465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 27956401 - 27956301
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattat------ataagcagaacttatgtagcctaagaggcacactttt--attcattaatattcttcgaga 251  Q
    |||| ||||||||||||||||||||| ||| |||      |||||||||||||||||||||||||||||||||||||  ||||| ||| ||| |||||||    
T  27956401 ttttagcccacgggtttgttatttctatcactatcactatataagcagaacttatgtagcctaagaggcacactttttgattcaataaaattattcgaga 27956302  T
Q  252 t 252  Q
    |    
T  27956301 t 27956301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 31633957 - 31634035
Alignment:
Q  164 ggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggc-acacttttattcattaata 241  Q
    |||||||| ||||||||||||||||| |||||||| |||||||||| |||| ||||||| ||  |||||||||||||||    
T  31633957 ggcccacgagtttgttatttctttcactatataagtagaacttatgcagccgaagaggcaacttttttattcattaata 31634035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 22264292 - 22264377
Alignment:
Q  168 cacgggtttgttatttctttcattatataagcagaac-ttatgtagcctaagaggcacacttttattcattaatattcttcgagat 252  Q
    |||||||||||||||||||||  ||| |||||| ||| ||||| ||||||||||||||  ||| ||||| ||| ||| ||||||||    
T  22264292 cacgggtttgttatttctttcgctatttaagcataacattatgcagcctaagaggcactttttgattcaataaaattattcgagat 22264377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 31636184 - 31636268
Alignment:
Q  160 ttttggcccacgggtttgttatttctttca--ttatataagcagaacttatgtagcctaagaggc-acacttttattcattaata 241  Q
    |||||||||||  |||||||||||||||||   |||||||| ||||||||||||||| ||||| | ||  |||||||||||||||    
T  31636184 ttttggcccacatgtttgttatttctttcactatatataagtagaacttatgtagccgaagagacaacttttttattcattaata 31636268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 23573444 - 23573523
Alignment:
Q  172 ggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaatattcttcgaga 251  Q
    |||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  23573444 ggtttgttatttctttcgctatataagcggaacttatgtagcctaagaggcacacttttattcattaataatattcgaga 23573523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 42890246 - 42890340
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacactttt--attcattaatattcttcgagat 252  Q
    |||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||  ||||| ||| ||| ||||||||    
T  42890246 ttttggcccacgggtttgttatttctttcactacataagcaaaacttatgtagcctaagaggcacactttttgattcaataaaattattcgagat 42890340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 22926887 - 22926795
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaatattcttcgagat 252  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||| ||| ||||| ||| | | ||||||||    
T  22926887 ttttggcccacgggtttgttatttctttcactatataagcagaacttatgcagcctaagagacacaatttaattcaataaaaatattcgagat 22926795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 6845186 - 6845278
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaatattcttcgagat 252  Q
    |||||||| ||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |||  ||| ||||||||||| | ||||||||    
T  6845186 ttttggcctacgagtttgttatttctttcactatataagcagaacttatgtatcctaagagacactttttgattcattaataatattcgagat 6845278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 22922091 - 22921997
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacac--ttttattcattaatattcttcgagat 252  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| |||||  ||| ||||| ||| ||| ||||||||    
T  22922091 ttttggcccacgggtttgttatttctttcactatatatgcagaacttatgcagcctaagagacacaccttttgattcaataaaattattcgagat 22921997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 23570449 - 23570524
Alignment:
Q  173 gtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaatattcttcgaga 251  Q
    ||||||||||||||||| ||||||||| ||||||||   ||||||||||||||||||||||||| |||| | |||||||    
T  23570449 gtttgttatttctttcactatataagcggaacttat---gcctaagaggcacacttttattcataaataatattcgaga 23570524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 22512284 - 22512218
Alignment:
Q  164 ggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacactttt 230  Q
    ||||||| ||||| |||||||||||| ||||||||||| ||||||||| |||||||| |||||||||    
T  22512284 ggcccacaggtttattatttctttcactatataagcagcacttatgtaacctaagagtcacactttt 22512218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 42891911 - 42891835
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattat------ataagcagaacttatgtagcctaagaggcacactttt 230  Q
    |||| ||||||||||||||||||||| ||| |||      |||||||||||||||||||||||||||||||||||||    
T  42891911 ttttagcccacgggtttgttatttctatcactatcactatataagcagaacttatgtagcctaagaggcacactttt 42891835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 37189715 - 37189809
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacac--ttttattcattaatattcttcgagat 252  Q
    ||||||| | || ||||||||||||||||  ||||||| |||||| ||||||||| |||||| ||||  ||||||||||||||| | ||||||||    
T  37189715 ttttggctcccgagtttgttatttctttcgctatataaacagaacatatgtagcccaagaggtacacttttttattcattaataatattcgagat 37189809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 18180919 - 18180830
Alignment:
Q  164 ggcccacgggtttgttatttctttcattatataagcagaac-ttatgtagcctaagaggcacacttttattcattaatattcttcgagat 252  Q
    |||||||  |||||||||||||||  |||| ||| |||||| ||||||||||||||||||||  ||| ||||| ||| ||| ||||||||    
T  18180919 ggcccacatgtttgttatttcttttgttatttaaacagaacattatgtagcctaagaggcactttttgattcaataaaattattcgagat 18180830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 18468565 - 18468600
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatat 195  Q
    |||||||||||||||||||||||||||||| |||||    
T  18468565 ttttggcccacgggtttgttatttctttcactatat 18468600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 4303298 - 4303392
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacactttt--attcattaatattcttcgagat 252  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||  ||||| ||| ||| ||||||||    
T  4303298 ttttggcccacgggtttgttatttctttcactatataaacaggacttatgtagcctaagaggcacactttttgattcaataaaattattcgagat 4303392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 1220669 - 1220594
Alignment:
Q  164 ggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaa 239  Q
    |||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||||||    
T  1220669 ggcccacgagtttgttatttctttcactatataaacagaacttatgtagcctaagaggcacgcttctattcattaa 1220594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 4300405 - 4300475
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacactttt 230  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||| |||||||||    
T  4300405 ttttggcccacgggtttgttatttctttcggtatataaggagaacttatgtagcctaagagacacactttt 4300475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 859392 - 859315
Alignment:
Q  164 ggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaata 241  Q
    |||||||| ||||||||||||||||| ||||||| || |||||||||||||||| | |||||||||||||||||||||    
T  859392 ggcccacgagtttgttatttctttcactatataaacataacttatgtagcctaaaatgcacacttttattcattaata 859315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 1217396 - 1217319
Alignment:
Q  164 ggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaata 241  Q
    |||||||| ||||||||||||||||| ||||||| || |||||||||||||||| | |||||||||||||||||||||    
T  1217396 ggcccacgagtttgttatttctttcactatataaacataacttatgtagcctaaaatgcacacttttattcattaata 1217319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 13882925 - 13882865
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagag 220  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  13882925 ttttggcccacgggtttgttatttctttcactatataagcagaacttatgtatcctaagag 13882865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 13886427 - 13886367
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagag 220  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||    
T  13886427 ttttggcccacgggtttgttatttctttcactatataagctgaacttatgtatcctaagag 13886367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 13441828 - 13441758
Alignment:
Q  171 gggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaata 241  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  13441828 gggtttgttatttctttcactatataagctgaacttatatagcctaagaggcacacttttattcattaata 13441758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 50857684 - 50857615
Alignment:
Q  161 tttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacactttt 230  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||    
T  50857684 tttggcccacgggtttgttattactttcactatataagcagaacttatgcagcctaagaggcacactttt 50857615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 13444225 - 13444147
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttttattcattaata 241  Q
    |||||||||  |||||||||||||   ||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  13444225 ttttggcccgtgggtttgttattt---tcactatataagcagaacttatgtagcctaagaggcacatttttattcagtaata 13444147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 8931073 - 8931116
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaa 203  Q
    |||||||||||| ||||||||||||||||| |||||||||||||    
T  8931073 ttttggcccacgagtttgttatttctttcactatataagcagaa 8931116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 45503 - 45409
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggc--acacttttattcattaatattcttcgagat 252  Q
    |||||||||| |||||| |||||||||||| |||||||| |||||||||| ||||||||||||  ||| ||||||||||||||| | ||||||||    
T  45503 ttttggcccaggggtttattatttctttcactatataaggagaacttatgcagcctaagaggcaaacatttttattcattaataatattcgagat 45409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 46945 - 46851
Alignment:
Q  160 ttttggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacac--ttttattcattaatattcttcgagat 252  Q
    |||||||| ||||||||||||||||||||| |||||||||| |||||||  ||| |||||| |||||  ||||||||||||||| | ||||||||    
T  46945 ttttggcctacgggtttgttatttctttcactatataagcaaaacttatccagcttaagagacacacttttttattcattaataatattcgagat 46851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 40779023 - 40778933
Alignment:
Q  164 ggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacactttt--attcattaatattcttcgagat 252  Q
    |||||||| |||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||  ||||| ||| ||| ||||||||    
T  40779023 ggcccacgtgtttattatttctttcactatataagcagaacttatgtagtctaagaggcacactttttgattcaataaaattattcgagat 40778933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 21849207 - 21849118
Alignment:
Q  164 ggcccacgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacactttt--attcattaatattcttcgagat 252  Q
    |||||||||||||||||||||||||| |||||||||  |||||||||||||||| ||| ||||||||  ||||| ||| ||| ||||||||    
T  21849207 ggcccacgggtttgttatttctttcactatataagcgaaacttatgtagcctaa-aggtacactttttgattcaataaaattattcgagat 21849118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 19677361 - 19677301
Alignment:
Q  169 acgggtttgttatttctttcattatataagcagaacttatgtagcctaagaggcacacttt 229  Q
    ||||||| ||||||||||| | ||| ||| ||||||||||| | |||||||||||||||||    
T  19677361 acgggttcgttatttcttttagtatttaaacagaacttatgcatcctaagaggcacacttt 19677301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University