View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14739_low_32 (Length: 255)
Name: NF14739_low_32
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14739_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 3356134 - 3355895
Alignment:
| Q |
1 |
tggtaacctaatcaatttagaaaccttggatctaaggcataccaaagttactgagttaccaagggagataaacatgctcacaaagctaaggcttcttcca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3356134 |
tggtaacctaatcaatttagaaaccttggatctaaggcataccaaagttactgagttaccaagggagataaacatgctcacaaagctaaggcttcttcca |
3356035 |
T |
|
| Q |
101 |
gtttattatagaaaacatgaaggacattattctattttgaattttacaacaggtgtgaaaatgcaagagggtattggatg-ttgaagtcattacagaaac |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3356034 |
gtttattatagaaaacatgaaggacattattctattttgaattttacaacaggtgtgaaaatgcaagagggtattggatgtttgaagtcattacagaaac |
3355935 |
T |
|
| Q |
200 |
tttactttttggaagcaaatcgaggtggaatagaccttat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3355934 |
tttactttttggaagcaaatcgaggtggaatagaccttat |
3355895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 3722834 - 3723073
Alignment:
| Q |
1 |
tggtaacctaatcaatttagaaaccttggatctaaggcataccaaagttactgagttaccaagggagataaacatgctcacaaagctaaggcttcttcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3722834 |
tggtaacctaatcaatttagaaaccttggatctatggcataccaaagttactgagttaccaagggagataaacatgctcacaaagcgaaggcttcttcca |
3722933 |
T |
|
| Q |
101 |
gtttattatagaaaacatgaaggacattattctattttgaattttacaacaggtgtgaaaatgcaagagggtattggatg-ttgaagtcattacagaaac |
199 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3722934 |
gtttataatagaaaacatgaaggacattattctattttgaattttacaacaggtgtgaaaatgcaagagggtattggatgtttgaagtcattacagaaac |
3723033 |
T |
|
| Q |
200 |
tttactttttggaagcaaatcgaggtggaatagaccttat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3723034 |
tttactttttggaagcaaatcgaggtggaatagaccttat |
3723073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 3321003 - 3320764
Alignment:
| Q |
1 |
tggtaacctaatcaatttagaaaccttggatctaaggcataccaaagttactgagttaccaagggagataaacatgctcacaaagctaaggcttcttcca |
100 |
Q |
| |
|
|||||| ||| |||| ||||||||||||||||||||||| || ||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3321003 |
tggtaatctagtcaacttagaaaccttggatctaaggcaaacaaaagtgcatgaattaccaaaagagataaacatgctcacaaagctaaggcttcttcct |
3320904 |
T |
|
| Q |
101 |
gtttattatagaaaacatgaaggacattattctattttgaattttacaacaggtgtgaaaatgcaagagggtattggatg-ttgaagtcattacagaaac |
199 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||| || ||||| || | |
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| T |
3320903 |
gtttattatagaaaatatgaaggtcattattctattttgaactttacagatggtgtgaaaatgcaagagggtattggatgtttgatatctttacaaaagc |
3320804 |
T |
|
| Q |
200 |
tttactttttggaagcaaatcgaggtggaatagaccttat |
239 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||||||| |
|
|
| T |
3320803 |
tttactttttggaagcagatcatgatggaatagaccttat |
3320764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 3309401 - 3309186
Alignment:
| Q |
1 |
tggtaacctaatcaatttagaaaccttggatctaaggcataccaaagttactgagttaccaagggagataaacatgctcacaaagctaaggcttcttcca |
100 |
Q |
| |
|
|||||| ||| |||| |||||||| |||||||||||||| || ||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||| |
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|
| T |
3309401 |
tggtaatctagtcaacttagaaacattggatctaaggcaaacaaaagtgcatgaattaccaatagagataaacaagctcacaaagctaaggcttcttcca |
3309302 |
T |
|
| Q |
101 |
gtttattatagaaaacatgaaggacattattctattttgaattttacaacaggtgtgaaaatgcaagagggtattggatg-ttgaagtcattacagaaac |
199 |
Q |
| |
|
| |||||||||| | ||||||| |||||| |||||| || |||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| | |
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|
| T |
3309301 |
gcttattatagagattatgaaggtcattataatatttttaactttacaactggtgtaaaaatgcaagagggcattggatgcttgaagtcattacagaagc |
3309202 |
T |
|
| Q |
200 |
tttactttttggaagc |
215 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
3309201 |
tttactttttggaagc |
3309186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 3202302 - 3202542
Alignment:
| Q |
1 |
tggtaacctaatcaatttagaaaccttggatctaaggcataccaaagttactgagttaccaagggagataaacatgctcacaaagctaaggcttcttcca |
100 |
Q |
| |
|
|||||| ||| |||| ||||||| |||||||||||||||||||| |||| ||||| |||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
3202302 |
tggtaatctagtcaacttagaaagcttggatctaaggcataccacagttgacgagttgccaagggagataaacaaactcacaaagttaaggcttcttcca |
3202401 |
T |
|
| Q |
101 |
gtttattatagaaaacatgaaggacattattctattttgaattttacaacaggtgtgaaaatgcaagagggtattggatg-ttgaagtcattacagaaac |
199 |
Q |
| |
|
||||||||||||||| |||| | ||||||||||| ||||| ||||| || || ||| |||| ||||| ||||||||||| ||||| || || || | | |
|
|
| T |
3202402 |
gtttattatagaaaatatgatgagcattattctatgttgaactttacgactggggtgcaaatacaagaaggtattggatgtttgaaatctttgcaacagc |
3202501 |
T |
|
| Q |
200 |
tttactttttggaagcaaatcgaggtggaatagaccttatt |
240 |
Q |
| |
|
|||||||||| || ||| ||| |||||||||||||||||| |
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|
| T |
3202502 |
tttactttttagatgcagatcatggtggaatagaccttatt |
3202542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 3302712 - 3302482
Alignment:
| Q |
2 |
ggtaacctaatcaatttagaaaccttggatctaaggcataccaaagttactgagttaccaagggagataaacatgctcacaaagctaaggcttcttccag |
101 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||| || || |||| ||| ||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3302712 |
ggtaatctaattaacttagaaaccttggatctaagacaaactcaagtgcatgaattaccaaaagagataaacaagctcacaaagctaaggcttcttccag |
3302613 |
T |
|
| Q |
102 |
tttattatagaaaacatgaaggacattattctattttgaattttacaacaggtgtgaaaatgcaagagggtattggatg-ttgaagtcattacagaaact |
200 |
Q |
| |
|
|||||| |||||| | ||||| || || ||||| ||||| ||||||| ||| ||||||||||| | ||||||| ||| ||||| || ||||| || || |
|
|
| T |
3302612 |
cttattacagaaaatacgaagggcaatactctatgttgaactttacaataggagtgaaaatgcaccaaggtattgaatgcttgaaatctttacaaaagct |
3302513 |
T |
|
| Q |
201 |
ttactttttggaagcaaatcgaggtggaata |
231 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |
|
|
| T |
3302512 |
ttactttttggaagcaaatcatggtggaata |
3302482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 3197120 - 3196920
Alignment:
| Q |
17 |
ttagaaaccttggatctaaggcataccaaagttactgagttaccaagggagataaacatgctcacaaagctaaggcttcttccagtttattatagaaaac |
116 |
Q |
| |
|
|||||||| |||||||||||||| || |||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||||||| ||| ||| |
|
|
| T |
3197120 |
ttagaaacattggatctaaggcaaactcaagtggttgagttaccaatggagataaacaagctcacaaagctaaggcttctttcagtttataataaaaagt |
3197021 |
T |
|
| Q |
117 |
atgaaggacattattctattttgaattttacaacaggtgtgaaaatgcaagagggtattggatg-ttgaagtcattacagaaactttactttttggaagc |
215 |
Q |
| |
|
|||||| |||| |||||| ||||| |||||||| || | |||||||| |||||||||| || ||||| || || || || ||||| ||||||||||| |
|
|
| T |
3197020 |
atgaagagcattgttctatgttgaactttacaactggggcacaaatgcaaaagggtattgggtgcttgaaatctttgcaaaatctttattttttggaagc |
3196921 |
T |
|
| Q |
216 |
a |
216 |
Q |
| |
|
| |
|
|
| T |
3196920 |
a |
3196920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 3220223 - 3220000
Alignment:
| Q |
17 |
ttagaaaccttggatctaaggcataccaaagttactgagttaccaagggagataaacatgctcacaaagctaaggcttcttccagtttattatagaaaac |
116 |
Q |
| |
|
||||||||||||||| ||||||| || |||| |||||||||| ||||| || | |||||||||||| || |||||||| |||||||| |||||| |
|
|
| T |
3220223 |
ttagaaaccttggatttaaggcaaactcaagtgcgcgagttaccaaaagagatgaagaagctcacaaagctgagacttcttccggtttattacagaaaat |
3220124 |
T |
|
| Q |
117 |
atgaaggacattattctattttgaattttacaacaggtgtgaaaatgcaagagggtattggatg-ttgaagtcattacagaaactttactttttggaagc |
215 |
Q |
| |
|
|||||||||||||||| || |||| |||||| |||||| |||||||| | ||||| || || |||| || ||||| || ||||||||||||||||| |
|
|
| T |
3220123 |
atgaaggacattattccatgctgaactttacagatggtgtgcaaatgcaaaaaggtatcgggtgtttgatatctttacaaaagctttactttttggaagc |
3220024 |
T |
|
| Q |
216 |
aaatcgaggtggaatagaccttat |
239 |
Q |
| |
|
| ||| ||||||||||||||||| |
|
|
| T |
3220023 |
agatcatggtggaatagaccttat |
3220000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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