View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14739_low_33 (Length: 255)
Name: NF14739_low_33
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14739_low_33 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 35900362 - 35900604
Alignment:
| Q |
13 |
attattcttaattatgatatacaccttttaaaatcaatgtaaaaagcatctagtccaagggagaaagattctggtcatatttggcattaattaactctac |
112 |
Q |
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| T |
35900362 |
attattcttaactatgatatacaccttttaaaatcaatgtaaaaaacatctagtccaagggagaaagattctggtcatatttggcattaattaactctac |
35900461 |
T |
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| Q |
113 |
ttttggctagcagtacaaatcttttaggctcattatgttaaaatgatgatgttttcggtgtttgatttatcttgaactaaagatggatttcatttctaat |
212 |
Q |
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| T |
35900462 |
ttttggctagcagtacaaatcttttaggctcattatgttaaaatgatgatgttttcggtgtttgatttatcttgaactaaagatggatttcatttctaat |
35900561 |
T |
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| Q |
213 |
ttgaagcttatgttagttcactggttctattattttatggtat |
255 |
Q |
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| T |
35900562 |
ttgaagcttatgttagttcactggttgtattattttatggtat |
35900604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 157 - 255
Target Start/End: Original strand, 35882821 - 35882919
Alignment:
| Q |
157 |
gatgatgttttcggtgtttgatttatcttgaactaaagatggatttcatttctaatttgaagcttatgttagttcactggttctattattttatggtat |
255 |
Q |
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| T |
35882821 |
gatgatgttttcactgttcgatttatcttgaactaaagatggatttcatttctaatttgaagcttatgttagttcactggctgtattattttatggtat |
35882919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 35882635 - 35882717
Alignment:
| Q |
40 |
ttaaaatcaatgtaaaaagcatctagtccaagggagaaagattctggtcatatttggcattaattaactctacttttggctag |
122 |
Q |
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| T |
35882635 |
ttaaaatcaatctaaaaagcatctagttcaagggaggaagattctggttatggttggcgttaattagctctacttttggctag |
35882717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 144 - 254
Target Start/End: Complemental strand, 10211529 - 10211420
Alignment:
| Q |
144 |
attatgttaaaatgatgatgtttt-cggtgtttgatttatcttgaactaaagatggatttcatttctaatttgaagcttatgttagttcactggttctat |
242 |
Q |
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| T |
10211529 |
attatgttaaa--gatgatgtttttcagtgtttgatttatcttgaaccaaaggtggatttcatttctaatttgaagcttatgttggttcactggttataa |
10211432 |
T |
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| Q |
243 |
tattttatggta |
254 |
Q |
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| T |
10211431 |
tgttttatggta |
10211420 |
T |
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