View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14739_low_34 (Length: 253)
Name: NF14739_low_34
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14739_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 35900927 - 35900799
Alignment:
| Q |
20 |
aataacagatctttgaattgaaatactgaattattcagacaaagaggatcagacgcacnnnnnnntaagaacaaaatgttcatactttttcactgatccc |
119 |
Q |
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| T |
35900927 |
aataacagatctttgaattgaaatactgaattattcagtcaaagaggatcagacgcacaaaaaaataagaacaaaatgttcatactttttcactgatccc |
35900828 |
T |
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| Q |
120 |
aacaatttgggatataaaccaagcaaaaa |
148 |
Q |
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| T |
35900827 |
aacaatttgggatataaaccaagcaaaaa |
35900799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 35884712 - 35884617
Alignment:
| Q |
20 |
aataacagatctttgaattgaaatactgaattattcagacaaagaggatcagacgcacnnnnnnntaagaacaaaatgttcatactttttcactgat |
116 |
Q |
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| T |
35884712 |
aataacaaatctttgaattgaaatacttaattattcagtcagagaggatcagacgcac-agaaaataagaacaaaacattcatactttttcactgat |
35884617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 35900734 - 35900696
Alignment:
| Q |
200 |
attttgctacttgtactgcattatttaccaccacctatg |
238 |
Q |
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| T |
35900734 |
attttgccacttgtactgcattatttaccaccacttatg |
35900696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 10209712 - 10209763
Alignment:
| Q |
26 |
agatctttgaattgaaatactgaattattcagacaaagaggatcagacgcac |
77 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||| |||| |
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| T |
10209712 |
agatctttgaattgaaatactgaattattcagtcagagaggatcagatgcac |
10209763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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