View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14739_low_37 (Length: 224)
Name: NF14739_low_37
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14739_low_37 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 1536653 - 1536430
Alignment:
| Q |
1 |
tctgcgtgacacttccacccaagtgcaatggggtctgaannnnnnnnncttgctaattctctttgttcctccaattccaaagatgatggcaagccaatat |
100 |
Q |
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| T |
1536653 |
tctgcgtgacacttccacccaagtgcaatggggtctgaatttttttttcttgataattctctttgttcctccaattccaaagatgatggcaagccaatat |
1536554 |
T |
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| Q |
101 |
tctttccactgcatattactcttccattttatataatacattttacattcaaatgaatccactcaaagagattaccatgnnnnnnnntcatgtctcagac |
200 |
Q |
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| T |
1536553 |
tctttccactgcatattactcttccattttatataatacattttacattcaaatgaatccactcaatgagattactatgaaaaaaaatcatgtctcagac |
1536454 |
T |
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| Q |
201 |
ttatactgtgtggcatgacattta |
224 |
Q |
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| T |
1536453 |
ttatactgtgtggcatgacattta |
1536430 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 175
Target Start/End: Complemental strand, 26414017 - 26413890
Alignment:
| Q |
57 |
ttctctttgttcctccaattccaaagatgatggcaagc-------caatattctttccactgc----atattactcttccattttatataatacatttta |
145 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |||||| ||| ||||||| | |
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| T |
26414017 |
ttctctctgttcctccaattccaaagatgatggcaagccaatgcccaatattctttccattgcatatatattactctcccattt--aatactacatttca |
26413920 |
T |
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| Q |
146 |
cattcaaatgaatccactcaaagagattac |
175 |
Q |
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| T |
26413919 |
catccaaatgaatccactctatgagattac |
26413890 |
T |
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