View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14739_low_6 (Length: 436)
Name: NF14739_low_6
Description: NF14739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14739_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 9 - 426
Target Start/End: Complemental strand, 389044 - 388627
Alignment:
| Q |
9 |
aaagaaagaaagaactaaccacaacatgttcctttcactcagatactccttcacatttctcttcactactcttctcctcacattatcatcatcttcacac |
108 |
Q |
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| T |
389044 |
aaagaaagaaagaactaaccacaacatgttcctttcactcagatactccttcacatttctcttcactactcttctcctcacattatcatcatcttcacac |
388945 |
T |
|
| Q |
109 |
attgcttccaaaatatccatcacaaatcatgacattcatagcttcaccaattctgtcagaggcaacaacatcacaggaatatcacagttcaaaagatacc |
208 |
Q |
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| T |
388944 |
attgcttccaaaatatccatctcaaatcatgacattcatagcttcaccaatgctgtcagaggcaacaacatcacaggaatatcacagttcaaaagatacc |
388845 |
T |
|
| Q |
209 |
tatctcgtttcgggtacattaaaaacaatgacacattcagcgacaaatttgattcgaattttgaatcagctatcatcaaataccaaagaaatcttggact |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
388844 |
tatctcgtttcgggtacattaaaaacaatgacacattcagcgacaaatttgattcgaattttgaatcagctatcatcaaataccaaagaaatcttggact |
388745 |
T |
|
| Q |
309 |
ccaagtaaccggtaaactcgattcgaacacagtttctcaaatgatcacaccaagatgcggtgttccagacacaacaaaaactcatcattatcataatcac |
408 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
388744 |
ccaagtaaccggtaaactcgattcgaatacagtttctcaaatgatcacaccaagatgcggtgttccagacacaacaaaaactcatcattatcataatcac |
388645 |
T |
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| Q |
409 |
catcaaaatcatattcat |
426 |
Q |
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|||||||||||||||||| |
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| T |
388644 |
catcaaaatcatattcat |
388627 |
T |
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