View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14740_high_11 (Length: 252)

Name: NF14740_high_11
Description: NF14740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14740_high_11
NF14740_high_11
[»] chr3 (10 HSPs)
chr3 (3-252)||(3356121-3356370)
chr3 (14-250)||(3302702-3302938)
chr3 (30-217)||(3321025-3321212)
chr3 (30-217)||(3309423-3309610)
chr3 (15-244)||(3202078-3202307)
chr3 (24-244)||(3220234-3220454)
chr3 (3-130)||(3722666-3722793)
chr3 (194-252)||(3722789-3722847)
chr3 (28-248)||(3197127-3197347)
chr3 (146-202)||(2854618-2854674)


Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 3 - 252
Target Start/End: Complemental strand, 3356370 - 3356121
Alignment:
Q  3 tccaagaatatattgagaagcactggtaactcaggaattcgtgctgtattagttttcgacaaaggtgaattgcctaaacatttcatggatgaattatctg 102  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3356370 tccaacaatgtattgagaagcactggtaactcaggaattcgtgctgtattagttttcgacaaaggtgaattgcctaaacatttcatggatgaattatctg 3356271  T
Q  103 tcaagttcaagcttttgagagtacttgactttgagagttcagttttgaattatattcctgataacttggggagtcttttccacctaaggtacttgaacct 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3356270 tcaagttcaagcttttgagagtacttgactttgagagttcagttttgaattatattcctgataacttggggagtcttttccacctaaggtacttgaacct 3356171  T
Q  203 gagtcgtacaaaagtcacagttattccaagttctattggtaacctaatca 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3356170 gagtcgtacaaaagtcacagttattccaagttctattggtaacctaatca 3356121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 3302938 - 3302702
Alignment:
Q  14 attgagaagcactggtaactcaggaattcgtgctgtattagttttcgacaaaggtgaattgcctaaacatttcatggatgaattatctgtcaagttcaag 113  Q
    |||||||| |||| | ||||||||||||||||| ||||| || || ||||||||||||||||||||||| |||||||||| ||||||||||||||| |||    
T  3302938 attgagaaacactagcaactcaggaattcgtgccgtatttgtctttgacaaaggtgaattgcctaaacagttcatggatgtattatctgtcaagtttaag 3302839  T
Q  114 cttttgagagtacttgactttgagagttcagttttgaattatattcctgataacttggggagtcttttccacctaaggtacttgaacctgagtcgtacaa 213  Q
    ||||| | ||||||||| |||||||  ||    ||||||| |||||||||||| ||||| | ||||||||||||||||||||||||| |||||| ||| |    
T  3302838 cttttaaaagtacttgattttgagaagtcttcattgaattttattcctgataatttgggaaatcttttccacctaaggtacttgaacttgagtcatacca 3302739  T
Q  214 aagtcacagttattccaagttctattggtaacctaat 250  Q
    |||| || ||| ||||||| || || ||||| |||||    
T  3302738 aagttacggttcttccaagatccatcggtaatctaat 3302702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 30 - 217
Target Start/End: Complemental strand, 3321212 - 3321025
Alignment:
Q  30 aactcaggaattcgtgctgtattagttttcgacaaaggtgaattgcctaaacatttcatggatgaattatctgtcaagttcaagcttttgagagtacttg 129  Q
    |||||||||||||||||| |||| || ||||||||||||||||| |||||||| ||||| |||| ||||||||  |||||||||||||||| ||||||||    
T  3321212 aactcaggaattcgtgctatatttgtcttcgacaaaggtgaatttcctaaacagttcattgatggattatctgctaagttcaagcttttgaaagtacttg 3321113  T
Q  130 actttgagagttcagttttgaattatattcctgataacttggggagtcttttccacctaaggtacttgaacctgagtcgtacaaaagt 217  Q
    | ||||||| |||  | ||||||| |||||||||||||||||| | ||||| || ||||||||||||||||||||||| |||||||||    
T  3321112 attttgagaattctttgttgaattgtattcctgataacttgggaaatctttacctcctaaggtacttgaacctgagtcatacaaaagt 3321025  T

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Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 30 - 217
Target Start/End: Complemental strand, 3309610 - 3309423
Alignment:
Q  30 aactcaggaattcgtgctgtattagttttcgacaaaggtgaattgcctaaacatttcatggatgaattatctgtcaagttcaagcttttgagagtacttg 129  Q
    ||||| || ||||||||| | || ||||| |||| || |||||| ||||| || ||||| |||| |||||||| ||||||||||||||||| ||||||||    
T  3309610 aactctggcattcgtgctatttttgtttttgacagagatgaatttcctaagcagttcatagatggattatctgccaagttcaagcttttgaaagtacttg 3309511  T
Q  130 actttgagagttcagttttgaattatattcctgataacttggggagtcttttccacctaaggtacttgaacctgagtcgtacaaaagt 217  Q
    | ||| ||| |||  | |||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||| |||||||||    
T  3309510 attttcagaattctttgttgaattatattcctgataacttgggaaatcttttcctcctaaggtacttgaacctgagtcatacaaaagt 3309423  T

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Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 3202078 - 3202307
Alignment:
Q  15 ttgagaagcactggtaactcaggaattcgtgctgtattagttttcgacaaaggtgaattgcctaaacatttcatggatgaattatctgtcaagttcaagc 114  Q
    |||||||||||  | |||||||||||||||||| | || ||||||||||||| ||||||  ||||| |||||||||||| ||| ||||  ||||||||||    
T  3202078 ttgagaagcacaagcaactcaggaattcgtgctatttttgttttcgacaaagatgaattatctaaagatttcatggatggattgtctgcaaagttcaagc 3202177  T
Q  115 ttttgagagtacttgactttgagagttcagttttgaattatattcctgataacttggggagtcttttccacctaaggtacttgaacctgagtcgtacaaa 214  Q
    |||||| ||| ||||| || ||||  ||  | ||||||| | |||||||||||||||||| ||||||||| || | |||||||||| |||| || |||||    
T  3202178 ttttgaaagtgcttgatttcgagaactccctgttgaattttgttcctgataacttggggaatcttttccatctgaagtacttgaacttgagccgcacaaa 3202277  T
Q  215 agtcacagttattccaagttctattggtaa 244  Q
    |||||||||| |||| || || ||||||||    
T  3202278 agtcacagttcttcctagatcaattggtaa 3202307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 244
Target Start/End: Complemental strand, 3220454 - 3220234
Alignment:
Q  24 actggtaactcaggaattcgtgctgtattagttttcgacaaaggtgaattgcctaaacatttcatggatgaattatctgtcaagttcaagcttttgagag 123  Q
    |||||||||||||||||||| |||||||| |||||||||||||| ||| ||  | ||||||||||||||| ||||  |  ||||||||||||||||| ||    
T  3220454 actggtaactcaggaattcgcgctgtatttgttttcgacaaaggagaactggatgaacatttcatggatggattagtttccaagttcaagcttttgaaag 3220355  T
Q  124 tacttgactttgagagttcagttttgaattatattcctgataacttggggagtcttttccacctaaggtacttgaacctgagtcgtacaaaagtcacagt 223  Q
    ||||||| |||||||  ||    ||||||||| ||||||||||||| ||||  ||||||||||||| |||| |||||||||||| ||| ||||| |  ||    
T  3220354 tacttgattttgagaaatctcggttgaattatgttcctgataacttagggaaccttttccacctaacgtacctgaacctgagtcatacgaaagttaaggt 3220255  T
Q  224 tattccaagttctattggtaa 244  Q
    |||||| || || ||||||||    
T  3220254 tattcctagatccattggtaa 3220234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 3722666 - 3722793
Alignment:
Q  3 tccaagaatatattgagaagcactggtaactcaggaattcgtgctgtattagttttcgacaaaggtgaattgcctaaacatttcatggatgaattatctg 102  Q
    ||||| ||||| ||| |||| | |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||     
T  3722666 tccaacaatatgttgcgaagaaatggtaactcaggaattcgcgctgtattagttttcgacaaaggtgaatttcctaaacggttcatggatggattatctt 3722765  T
Q  103 tcaagttcaagcttttgagagtacttga 130  Q
     ||||||||||||||||||||| |||||    
T  3722766 ccaagttcaagcttttgagagttcttga 3722793  T

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Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 3722789 - 3722847
Alignment:
Q  194 cttgaacctgagtcgtacaaaagtcacagttattccaagttctattggtaacctaatca 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3722789 cttgaacctgagtcgtacaaaagtcacagttattccaagttctattggtaacctaatca 3722847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 3197347 - 3197127
Alignment:
Q  28 gtaactcaggaattcgtgctgtattagttttcgacaaaggtgaattgcctaaacatttcatggatgaattatctgtcaagttcaagcttttgagagtact 127  Q
    |||||||||||||||||||| | || ||||| ||||   | ||| || ||||| ||||||| |||   |||||||||||||||||| || | | ||| ||    
T  3197347 gtaactcaggaattcgtgctatctttgtttttgacagtagagaaatgtctaaatatttcattgatagtttatctgtcaagttcaagtttgtaaaagttct 3197248  T
Q  128 tgactttgagagttcagttttgaattatattcctgataacttggggagtcttttccacctaaggtacttgaacctgagtcgtacaaaagtcacagttatt 227  Q
    |||||||| |  |||  | ||||||||| ||||||| |||||||| | |||  || | |||| |||||||||||| |||| ||||||||| |  ||| ||    
T  3197247 tgactttgggcattctttgttgaattatgttcctgagaacttgggaaatctactcaatctaaagtacttgaacctaagtcatacaaaagttatggttctt 3197148  T
Q  228 ccaagttctattggtaaccta 248  Q
    || || ||||| |||||||||    
T  3197147 cctagatctatcggtaaccta 3197127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 2854674 - 2854618
Alignment:
Q  146 tttgaattatattcctgataacttggggagtcttttccacctaaggtacttgaacct 202  Q
    |||||||||||||||| |||| || |||| |||||| ||| |||||||||| |||||    
T  2854674 tttgaattatattcctaataattttgggaatctttttcacttaaggtacttaaacct 2854618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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