View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14740_high_3 (Length: 502)
Name: NF14740_high_3
Description: NF14740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14740_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 120 - 471
Target Start/End: Complemental strand, 24994321 - 24993956
Alignment:
| Q |
120 |
tccatcgtgaatgaccatagaaactaaattcaaacacctatcgttcgctattcgcaccaaaccctccaaaagcccatcatacccaccaaaacccctagca |
219 |
Q |
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| T |
24994321 |
tccattgtgaatgcccatagaaactaaattcaaacacctatcgttcgctattcacaccaaaccctccaaaaacccatcatacccaccaaaacccctagca |
24994222 |
T |
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| Q |
220 |
agagcacctcgtcttcccatcagcacaaatgagtccaattaaacacctgaaaatgagttgttacattcctcattcagattccaccaccaa---------- |
309 |
Q |
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| T |
24994221 |
agagcacctcgtcttcccatcaccacaaatgagtccaattaaacacctgaaaaggagttgttacattcttcattcagattccaccaccaattaatccagt |
24994122 |
T |
|
| Q |
310 |
ttgttggggaagacaccaaaacaggcttaagaaaactgattcgtaatctcaaatcaaaagtgatcggtccatcaaacacccgaaacaaattactaagca- |
408 |
Q |
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||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
24994121 |
ttgttggggaagacaccaaaacaagctt-agaaaactgactcgtaatctcaaatcaaaagcgatcggtccatctaacacccgaaacaaattactaagcac |
24994023 |
T |
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| Q |
409 |
----cccctcaacttccaaaccaccggaataaatcaaacaacaaattaaatcaggataaaatagtct |
471 |
Q |
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| T |
24994022 |
ccccccccccaacctccagaccaccagaataaatcaaacaacaaattaaatcaggataaaatagtct |
24993956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 24994430 - 24994386
Alignment:
| Q |
10 |
catcatcaccaataaaaagcaaacctccaaactcaaagccaacac |
54 |
Q |
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| T |
24994430 |
catcaacaccaataaaaagcaaacctccaaactcaaagccaacac |
24994386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 260
Target Start/End: Original strand, 9371809 - 9371950
Alignment:
| Q |
120 |
tccatcgtgaatgaccatagaaactaaattcaaacacctatcgttcgctattcgcaccaaa-ccctccaaaagcccatcatacccaccaaaacccctagc |
218 |
Q |
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||||||||||||||||||||||| |||||||||||||||| || ||||| | ||||||| |||||||||| | |||||||||||| | |||||||| | |
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| T |
9371809 |
tccatcgtgaatgaccatagaaagtaaattcaaacacctaccgcgcgctacttacaccaaacccctccaaaaacacatcatacccactacaacccctacc |
9371908 |
T |
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| Q |
219 |
aagagcacctcgtcttcccatcagcacaaatgagtccaatta |
260 |
Q |
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| T |
9371909 |
aaaagcacatggtcttatcattaccataattgagtccaatta |
9371950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 418
Target Start/End: Complemental strand, 25153263 - 25153200
Alignment:
| Q |
355 |
atctcaaatcaaaagtgatcggtccatcaaacacccgaaacaaattactaagcacccctcaact |
418 |
Q |
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| T |
25153263 |
atctcgaatcaaaagtgatcggtccaccagactcccgacacaaatcattaagcaccccttaact |
25153200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 35806619 - 35806523
Alignment:
| Q |
120 |
tccatcgtgaatgaccatagaaactaaattcaaacacctatcgttcgctattcgcaccaaaccctccaaaagcccatcatacccaccaaaaccccta |
216 |
Q |
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| T |
35806619 |
tccatggtgaatgaccatatagacaaaattcaatcacctattgtccgttgctcacatcaaaccctccaaaaagcaatcaaaccaaccaaaaccccta |
35806523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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