View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14740_high_5 (Length: 460)
Name: NF14740_high_5
Description: NF14740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14740_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Complemental strand, 35440296 - 35439866
Alignment:
| Q |
18 |
gtgttcggcgaatccagcaaagcaatgtgacgcaacttgtttccttcatagcaaactgagttgtaattcactttccgaattccgatatcaccttcgcgta |
117 |
Q |
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| T |
35440296 |
gtgttcggcgaatccagcaaagcaatgcgatgcaacttgtttccttcatagcaaactgagttgtaattcacttttcgaattccgatatcaccttcgcgta |
35440197 |
T |
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| Q |
118 |
aaaccgaacctacggaatggcagcaagtctttggcgctacgcaaccggctcaaccacaaacccggtcgactactccggcgtcgaattctggtcgaaccca |
217 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35440196 |
aaaccgaaccga---aatggcagcaagtctttggcgctacgcaaccggttcaaccacaaacccggtcgactactccggcgtcgaattctggtcgaaccca |
35440100 |
T |
|
| Q |
218 |
gaacgaaccggctggttaacaaaacaaggcgaatacataaaaacatggcgaagacgttggttcgttttgaaacaagggaaactcttctggttcaaagaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35440099 |
gaacgaaccggctggttaacaaaacaaggcgaatacataaaaacatggcgaagacgttggttcgttttgaaacaagggaaactcttctggttcaaagaat |
35440000 |
T |
|
| Q |
318 |
catcaatcacacgcgcttctataccgcgtggtgttattcctgttgctacttgtctcactgttaaaggcgctgaagatattcttcataaaccctacgcatt |
417 |
Q |
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| T |
35439999 |
caacaatcacacgcgcttctatcccgcgtggtgttattcctgttgctacttgtctcactgttaaaggcgctgaagatattcttcataaaccctacgcatt |
35439900 |
T |
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| Q |
418 |
tgaactttccacacgcgctgatacgatgtatttt |
451 |
Q |
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| T |
35439899 |
tgaactttccacacgcgctgatacgatgtatttt |
35439866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 201 - 321
Target Start/End: Original strand, 25445333 - 25445453
Alignment:
| Q |
201 |
aattctggtcgaacccagaacgaaccggctggttaacaaaacaaggcgaatacataaaaacatggcgaagacgttggttcgttttgaaacaagggaaact |
300 |
Q |
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|||||||||| ||||||||||| |||| ||||||||||||||||| || ||||| ||||| ||||| | |||||||||||| | |||||||| ||||| |
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| T |
25445333 |
aattctggtcaaacccagaacgttccggttggttaacaaaacaaggtgactacatcaaaacctggcgtcgccgttggttcgttcttaaacaaggtaaact |
25445432 |
T |
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| Q |
301 |
cttctggttcaaagaatcatc |
321 |
Q |
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|||||||||||| ||| |||| |
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| T |
25445433 |
cttctggttcaaggaaccatc |
25445453 |
T |
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