View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14740_low_1 (Length: 601)

Name: NF14740_low_1
Description: NF14740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14740_low_1
NF14740_low_1
[»] chr8 (22 HSPs)
chr8 (18-350)||(41806110-41806441)
chr8 (350-597)||(30410239-30410486)
chr8 (350-597)||(28644562-28644809)
chr8 (349-597)||(30405730-30405961)
chr8 (350-545)||(33071918-33072113)
chr8 (350-545)||(42234656-42234851)
chr8 (350-545)||(38757003-38757186)
chr8 (65-301)||(41800036-41800270)
chr8 (349-503)||(43807485-43807641)
chr8 (350-503)||(43812044-43812199)
chr8 (348-503)||(202202-202361)
chr8 (348-503)||(317039-317198)
chr8 (349-503)||(197684-197842)
chr8 (349-503)||(312521-312679)
chr8 (350-446)||(41945339-41945434)
chr8 (349-450)||(41949801-41949902)
chr8 (474-528)||(27435169-27435223)
chr8 (17-63)||(42034109-42034154)
chr8 (553-597)||(197595-197639)
chr8 (553-597)||(202113-202157)
chr8 (553-597)||(312432-312476)
chr8 (553-597)||(316950-316994)
[»] chr5 (25 HSPs)
chr5 (350-587)||(30695293-30695530)
chr5 (350-545)||(32485947-32486143)
chr5 (349-597)||(40367521-40367758)
chr5 (350-545)||(19502307-19502504)
chr5 (350-597)||(40371659-40371892)
chr5 (349-545)||(26336767-26336965)
chr5 (350-545)||(36632314-36632497)
chr5 (370-535)||(43384972-43385138)
chr5 (349-503)||(7099374-7099532)
chr5 (349-503)||(12023288-12023446)
chr5 (350-503)||(7103943-7104100)
chr5 (350-503)||(12018731-12018888)
chr5 (349-503)||(16798668-16798826)
chr5 (350-503)||(16794108-16794265)
chr5 (398-531)||(20830304-20830437)
chr5 (350-503)||(10274546-10274698)
chr5 (344-458)||(10277198-10277312)
chr5 (349-503)||(37682035-37682182)
chr5 (203-350)||(278541-278689)
chr5 (350-503)||(37658732-37658878)
chr5 (398-472)||(20808675-20808749)
chr5 (65-181)||(278393-278511)
chr5 (548-597)||(37658919-37658969)
chr5 (548-597)||(37682223-37682273)
chr5 (474-506)||(5733082-5733114)
[»] chr7 (13 HSPs)
chr7 (349-597)||(27761396-27761645)
chr7 (350-597)||(27756846-27757094)
chr7 (356-587)||(47419498-47419729)
chr7 (350-597)||(22901154-22901403)
chr7 (349-531)||(35705633-35705815)
chr7 (350-545)||(7466485-7466669)
chr7 (363-539)||(733634-733811)
chr7 (349-503)||(7940083-7940241)
chr7 (350-503)||(7944636-7944793)
chr7 (362-522)||(13828087-13828248)
chr7 (362-458)||(37355573-37355669)
chr7 (549-597)||(7939993-7940041)
chr7 (549-597)||(7944546-7944594)
[»] chr3 (18 HSPs)
chr3 (349-597)||(21847108-21847358)
chr3 (349-597)||(21850198-21850448)
chr3 (350-545)||(9105275-9105470)
chr3 (350-545)||(11004365-11004560)
chr3 (349-545)||(43547722-43547920)
chr3 (350-545)||(9697586-9697783)
chr3 (349-503)||(54171924-54172082)
chr3 (349-503)||(54167344-54167502)
chr3 (350-503)||(39399127-39399279)
chr3 (426-546)||(43554645-43554765)
chr3 (80-350)||(24685192-24685444)
chr3 (104-299)||(24631841-24632035)
chr3 (411-531)||(755891-756012)
chr3 (349-427)||(43554291-43554371)
chr3 (207-282)||(24682519-24682594)
chr3 (154-316)||(24653501-24653664)
chr3 (398-503)||(38175790-38175894)
chr3 (420-453)||(755824-755857)
[»] chr1 (7 HSPs)
chr1 (350-590)||(39793831-39794070)
chr1 (350-591)||(16588394-16588635)
chr1 (349-597)||(26316012-26316247)
chr1 (350-597)||(26311522-26311756)
chr1 (349-545)||(43591783-43591979)
chr1 (349-503)||(10504435-10504588)
chr1 (474-506)||(41879945-41879977)
[»] chr6 (13 HSPs)
chr6 (350-590)||(8319960-8320199)
chr6 (349-591)||(27552025-27552268)
chr6 (349-590)||(8315421-8315662)
chr6 (350-591)||(17779914-17780156)
chr6 (350-545)||(17096236-17096431)
chr6 (348-587)||(27574657-27574886)
chr6 (350-539)||(17895691-17895881)
chr6 (350-545)||(14531749-14531945)
chr6 (349-539)||(17886816-17887001)
chr6 (388-503)||(6440865-6440979)
chr6 (411-452)||(17163689-17163730)
chr6 (415-453)||(7888212-7888250)
chr6 (363-452)||(17159610-17159700)
[»] chr4 (20 HSPs)
chr4 (349-597)||(31670089-31670337)
chr4 (349-545)||(53722006-53722202)
chr4 (350-545)||(10317025-10317220)
chr4 (349-545)||(8892582-8892779)
chr4 (350-545)||(27186142-27186341)
chr4 (343-545)||(43683636-43683826)
chr4 (349-503)||(44151557-44151715)
chr4 (350-503)||(3770842-3770999)
chr4 (350-503)||(44147023-44147180)
chr4 (349-545)||(50627904-50628088)
chr4 (350-503)||(41884925-41885076)
chr4 (446-545)||(35842843-35842942)
chr4 (349-503)||(31359150-31359303)
chr4 (348-503)||(49274517-49274670)
chr4 (350-445)||(31354678-31354772)
chr4 (384-544)||(53785880-53786039)
chr4 (401-453)||(45976222-45976274)
chr4 (551-597)||(44147223-44147269)
chr4 (551-597)||(44151758-44151804)
chr4 (377-427)||(35842797-35842847)
[»] chr2 (12 HSPs)
chr2 (349-597)||(8055391-8055639)
chr2 (350-597)||(8050839-8051086)
chr2 (350-591)||(6463354-6463583)
chr2 (350-545)||(12999426-12999622)
chr2 (349-503)||(36670502-36670660)
chr2 (349-503)||(36675050-36675208)
chr2 (350-512)||(13270980-13271131)
chr2 (349-503)||(35950443-35950596)
chr2 (350-503)||(41093824-41093976)
chr2 (363-450)||(29767953-29768041)
chr2 (415-503)||(34590280-34590366)
chr2 (404-441)||(27403696-27403733)
[»] scaffold0440 (3 HSPs)
scaffold0440 (349-503)||(2979-3137)
scaffold0440 (349-503)||(7505-7662)
scaffold0440 (549-597)||(7704-7753)
[»] scaffold0044 (4 HSPs)
scaffold0044 (349-503)||(44865-45023)
scaffold0044 (350-503)||(49445-49602)
scaffold0044 (548-597)||(44775-44824)
scaffold0044 (548-597)||(49355-49404)


Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 41806441 - 41806110
Alignment:
Q  18 gcaagttcacttgatcattagacaaacacaaaatgtaggtttctctcttctgaaccagaagagataaaacaagcagcacagaaaagtcaggaaaaagatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41806441 gcaagttcacttgatcattagacaaacacaaaatgtaggtttctctcttctgaaccagaagagataaaacaagcagcacagaaaagtcaggaaaaagatg 41806342  T
Q  118 taggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttactactgtttttctctctccaaagttagatgcatttccttttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41806341 taggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttactactgtttttttctctccaaagttagatgcatttccttttc 41806242  T
Q  218 ctgcaaagtttatggtttgtgtttgattttgtgagattctccttgttatttgattttataggtcccgcggaacaagaggaatgttaactgtagaaagaat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41806241 ctgcaaagtttatggtttgtgtttgattttgtgagattctccttgttatttgattttataggtcccgcggaacaaga-gaatgttaactgtagaaagaat 41806143  T
Q  318 gtaagatgggcttctatatgcactgaagagaat 350  Q
    |||||| ||||||||||| ||||||||||||||    
T  41806142 gtaagacgggcttctataagcactgaagagaat 41806110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 350 - 597
Target Start/End: Complemental strand, 30410486 - 30410239
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| |||||||||||||||||||||||||||||    
T  30410486 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttaatttgttatgaagtttgttacaagtttgtt 30410387  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 549  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  30410386 agaggttagtagataagatctagattttgttacattgcttgtacttcaagcaacctagctagatattgtatataagctacctcctttgtacatttttata 30410287  T
Q  550 tgtagaattaataaaggtcaattacaatttcatcataactttcttctc 597  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  30410286 tgtagaatcaataaagatcaattacaatttcatcataactttcttctc 30410239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 350 - 597
Target Start/End: Original strand, 28644562 - 28644809
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28644562 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 28644661  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 549  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| |    
T  28644662 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacagtgtatataagctacctcctttgtatatttttgca 28644761  T
Q  550 tgtagaattaataaaggtcaattacaatttcatcataactttcttctc 597  Q
    |||||||| |||||   ||||||||||||||||||||| |||||||||    
T  28644762 tgtagaatcaataagaatcaattacaatttcatcataattttcttctc 28644809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 349 - 597
Target Start/End: Complemental strand, 30405961 - 30405730
Alignment:
Q  349 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 448  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||                 ||||||||||||||||||||||||||||||||||||    
T  30405961 atgttagtttgttttaattcaagtttagtttagtgataatcacattc-----------------tgttttagtttgttatgaagtttgttacaagtttgt 30405879  T
Q  449 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 548  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  30405878 tagaggttagtagataagatctagaatttgttacattgcttgtacttcaagcaacctagctagatattgtatataagctacctcctttgtacatttttat 30405779  T
Q  549 atgtagaattaataaaggtcaattacaatttcatcataactttcttctc 597  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  30405778 atgtagaatcaataaagatcaattacaatttcatcataactttcttctc 30405730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 350 - 545
Target Start/End: Original strand, 33071918 - 33072113
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||| |||||||||||||||||||||||||||||||||||    
T  33071918 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacactttcttttagtttgttatgaagtttgttacaagtttgtt 33072017  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
     |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  33072018 ggaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 33072113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 350 - 545
Target Start/End: Complemental strand, 42234851 - 42234656
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  42234851 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 42234752  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||    
T  42234751 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataaactaccttctttgtatatttt 42234656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 350 - 545
Target Start/End: Original strand, 38757003 - 38757186
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||            |||||||||||||||    
T  38757003 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgtt 38757090  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||| |||||    
T  38757091 agaggttagtagataagatctagagtttgttacattgcttgtgattcaagcaacctagccagatattgtatataagctacctcctttgtatatttt 38757186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 65 - 301
Target Start/End: Complemental strand, 41800270 - 41800036
Alignment:
Q  65 ttctgaaccagaaga-gataaaacaagcagcacagaaaagtcaggaaaaa-gatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttcta 162  Q
    |||||||| |||||| ||||||||||| ||||||||||| |||||||||| ||||||||| ||  || ||||| || ||||||||||||| |||||||||    
T  41800270 ttctgaactagaagaagataaaacaagaagcacagaaaattcaggaaaaaagatgtaggagctcaaacgaggtagaaaaacacaagccgtgaatcttcta 41800171  T
Q  163 aatatttcacttactactgtttttctctctccaaagttagatgcatttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctccttg 262  Q
    |||||    |||||| ||||||||   |||||||||| |  ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |    
T  41800170 aatat----cttacttctgttttttattctccaaagtgatgtgcatttccttttcctgcacagtttatggtttgtgtttgattttgttagattctcctgg 41800075  T
Q  263 ttatttgattttataggtcccgcggaacaagaggaatgt 301  Q
    ||||||||||||||||||||||  ||||||| |||||||    
T  41800074 ttatttgattttataggtcccgaagaacaaggggaatgt 41800036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 349 - 503
Target Start/End: Complemental strand, 43807641 - 43807485
Alignment:
Q  349 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 448  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  43807641 atgttagcttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgt 43807542  T
Q  449 tagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    |||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  43807541 tagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43807485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 350 - 503
Target Start/End: Complemental strand, 43812199 - 43812044
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  43812199 tgttagcttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgtt 43812100  T
Q  450 agaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    ||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  43812099 agaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43812044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 348 - 503
Target Start/End: Complemental strand, 202361 - 202202
Alignment:
Q  348 aatgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtt 445  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||    
T  202361 aatgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 202262  T
Q  446 tgttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    ||||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  202261 tgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 202202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 348 - 503
Target Start/End: Complemental strand, 317198 - 317039
Alignment:
Q  348 aatgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtt 445  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||    
T  317198 aatgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 317099  T
Q  446 tgttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    ||||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  317098 tgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 317039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 349 - 503
Target Start/End: Complemental strand, 197842 - 197684
Alignment:
Q  349 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 446  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  197842 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 197743  T
Q  447 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  197742 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 349 - 503
Target Start/End: Complemental strand, 312679 - 312521
Alignment:
Q  349 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 446  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  312679 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 312580  T
Q  447 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  312579 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 312521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 350 - 446
Target Start/End: Original strand, 41945339 - 41945434
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagttt 446  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||  ||||| |||||||||||    
T  41945339 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgtta-caagttggttacaagttt 41945434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 349 - 450
Target Start/End: Original strand, 41949801 - 41949902
Alignment:
Q  349 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 448  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||| || ||||| ||| | |||||||||||||| |||||||||||||||||| ||    
T  41949801 atgttagtttcttttaattcaagcttagtttagtgataatcacaatcagtgattaatcacactctgttttagtttgttttgaagtttgttacaagttggt 41949900  T
Q  449 ta 450  Q
    ||    
T  41949901 ta 41949902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 474 - 528
Target Start/End: Complemental strand, 27435223 - 27435169
Alignment:
Q  474 gtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagcta 528  Q
    ||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||    
T  27435223 gtttgttacatagcttgtgcttcaagcaacctaagtagatattgtatataagcta 27435169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 42034109 - 42034154
Alignment:
Q  17 agcaagttcacttgatcattagacaaacacaaaatgtaggtttctct 63  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||    
T  42034109 agcaagttcacttga-cattagacaaacacaagatgtaggtttctct 42034154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 553 - 597
Target Start/End: Complemental strand, 197639 - 197595
Alignment:
Q  553 agaattaataaaggtcaattacaatttcatcataactttcttctc 597  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||    
T  197639 agaatcaataaagatcatttacaatttcatcataactttcttctc 197595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 553 - 597
Target Start/End: Complemental strand, 202157 - 202113
Alignment:
Q  553 agaattaataaaggtcaattacaatttcatcataactttcttctc 597  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||    
T  202157 agaatcaataaagatcatttacaatttcatcataactttcttctc 202113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 553 - 597
Target Start/End: Complemental strand, 312476 - 312432
Alignment:
Q  553 agaattaataaaggtcaattacaatttcatcataactttcttctc 597  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||    
T  312476 agaatcaataaagatcatttacaatttcatcataactttcttctc 312432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 553 - 597
Target Start/End: Complemental strand, 316994 - 316950
Alignment:
Q  553 agaattaataaaggtcaattacaatttcatcataactttcttctc 597  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||    
T  316994 agaatcaataaagatcatttacaatttcatcataactttcttctc 316950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 350 - 587
Target Start/End: Original strand, 30695293 - 30695530
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30695293 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 30695392  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 549  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30695393 agaggttagtatataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttcgta 30695492  T
Q  550 tgtagaattaataaaggtcaattacaatttcatcataa 587  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  30695493 tgtagaatcaataaagatcaattacaatttcatcataa 30695530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 350 - 545
Target Start/End: Complemental strand, 32486143 - 32485947
Alignment:
Q  350 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 448  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32486143 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 32486044  T
Q  449 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||| |  |||||||||| ||||||||||||||||||||||| || |||||    
T  32486043 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaacctccttagctagacattgtatataagctacctcctttatatatttt 32485947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 349 - 597
Target Start/End: Complemental strand, 40367758 - 40367521
Alignment:
Q  349 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  | ||||| |||||||||||||||||||||            |||||||||    
T  40367758 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgtta------------caagtttgt 40367671  T
Q  449 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagc-aacttagctagatattgtatataagctacctcctttgtacatttttg 547  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||      
T  40367670 tagaggctagtagataagatctagagtttgttacattgcttgtgcttcaagcaaacttggttagatattgtatataagctacctcctttgtacattttca 40367571  T
Q  548 tatgtagaattaataaaggtcaattacaatttcatcataactttcttctc 597  Q
    |||||||||| |||||   ||||||||||||||||||||| |||||||||    
T  40367570 tatgtagaatcaataagaatcaattacaatttcatcataattttcttctc 40367521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 350 - 545
Target Start/End: Original strand, 19502307 - 19502504
Alignment:
Q  350 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaatt-acattttgttttagtttgttatgaagtttgttacaagtttg 447  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| || |||| | |||||||||||||||||||||||||||||||||||||||||    
T  19502307 tgttagtttgttttaatttaagtttagttttagtgataatcacaatcagtgattaaatcacattttgttttagtttgttatgaagtttgttacaagtttg 19502406  T
Q  448 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
    ||||||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| || |||||    
T  19502407 ttagaggttagaaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctaaacattgtatataagctacctcctttatatatttt 19502504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 350 - 597
Target Start/End: Complemental strand, 40371892 - 40371659
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  | ||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  40371892 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagattgttacaagtttgtt 40371793  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 549  Q
    ||||| |||||||||||||||||||||| |||||||| |||||              | |||||||||||||||||||||||||||||||||||||  ||    
T  40371792 agaggctagtagataagatctagagtttattacattgtttgtg--------------gttagatattgtatataagctacctcctttgtacattttcata 40371707  T
Q  550 tgtagaattaataaaggtcaattacaatttcatcataactttcttctc 597  Q
    |||||||| |||||   |||| |||||||||||||||| |||||||||    
T  40371706 tgtagaatcaataagaatcaactacaatttcatcataattttcttctc 40371659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 349 - 545
Target Start/End: Complemental strand, 26336965 - 26336767
Alignment:
Q  349 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgtttt-agtttgttatgaagtttgttacaagttt 446  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||  || ||||| |||||||||||| |||||||||||| |||||||||| ||||    
T  26336965 atgttagtttgttttaattcaagtttaattttagtgataatcacaatcggtgattaatcacattttgtttttagtttgttatgatgtttgttacatgttt 26336866  T
Q  447 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
    |||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  26336865 gttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 26336767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 350 - 545
Target Start/End: Original strand, 36632314 - 36632497
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| ||| ||||||||||||            |||||||||||||||    
T  36632314 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgaataatcacactttgttttagtt------------tgttacaagtttgtt 36632401  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  36632402 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 36632497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 370 - 535
Target Start/End: Original strand, 43384972 - 43385138
Alignment:
Q  370 agtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatc 469  Q
    ||||||||||||||||||||| ||| | |||||||| ||||||  |||||||||||||||||||||||||||||||||||||| ||||| | |||| |||    
T  43384972 agtttagtttagtgataatcataattagtggttaatcacatttgcttttagtttgttatgaagtttgttacaagtttgttagaagttagcaaataaaatc 43385071  T
Q  470 tagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatat-aagctacctcctt 535  Q
    ||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  43385072 tagggtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaagctacctcctt 43385138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 349 - 503
Target Start/End: Complemental strand, 7099532 - 7099374
Alignment:
Q  349 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 446  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  7099532 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 7099433  T
Q  447 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  7099432 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7099374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 349 - 503
Target Start/End: Original strand, 12023288 - 12023446
Alignment:
Q  349 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 446  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  12023288 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 12023387  T
Q  447 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  12023388 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12023446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 350 - 503
Target Start/End: Complemental strand, 7104100 - 7103943
Alignment:
Q  350 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 447  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  7104100 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7104001  T
Q  448 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  7104000 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7103943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 350 - 503
Target Start/End: Original strand, 12018731 - 12018888
Alignment:
Q  350 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 447  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  12018731 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 12018830  T
Q  448 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  12018831 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12018888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 349 - 503
Target Start/End: Original strand, 16798668 - 16798826
Alignment:
Q  349 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 446  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  16798668 atgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 16798767  T
Q  447 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  16798768 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16798826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 350 - 503
Target Start/End: Original strand, 16794108 - 16794265
Alignment:
Q  350 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 447  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  16794108 tgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 16794207  T
Q  448 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  16794208 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16794265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 398 - 531
Target Start/End: Complemental strand, 20830437 - 20830304
Alignment:
Q  398 tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttca 497  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| |||| | |||||||| || ||||||||||||||||||||||||    
T  20830437 tggttaatcacatttagtttcagtttgttatgaagtttgttacaagtttgttagagattagcaaataagatcaagtgtttgttacattgcttgtgcttca 20830338  T
Q  498 agcaacttagctagatattgtatataagctacct 531  Q
    ||||||||| ||||| ||||||||||||||||||    
T  20830337 agcaacttaactagacattgtatataagctacct 20830304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 350 - 503
Target Start/End: Original strand, 10274546 - 10274698
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | || ||||||||||||| ||||||||||||| |||    
T  10274546 tgttagtttgttttaattcaagtttagtttagtgataatcacaattaatggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 10274645  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    |||| ||||   ||||| | ||| ||||||||  | |||||| |||||||||||    
T  10274646 agagattagctcataaggt-tagggtttgttatttagcttgtacttcaagcaac 10274698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 344 - 458
Target Start/End: Original strand, 10277198 - 10277312
Alignment:
Q  344 agagaatgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaag 443  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| |||||||||||    
T  10277198 agaggatgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaag 10277297  T
Q  444 tttgttagaggttag 458  Q
    || ||||||| ||||    
T  10277298 ttagttagagattag 10277312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 349 - 503
Target Start/End: Original strand, 37682035 - 37682182
Alignment:
Q  349 atgttagtttgttttaattcaagtttag-tttagtgataatcacaatcaatggttaattac-attttgttttagtttgttatgaagtttgttacaagttt 446  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || | |||||||||||||||||||           ||||||    
T  37682035 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagttt 37682123  T
Q  447 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  37682124 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 37682182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 203 - 350
Target Start/End: Original strand, 278541 - 278689
Alignment:
Q  203 atgcatttccttttcctgcaaagtttatggtttgtgttt-gattttgtgagattctccttgttatttgattttataggtcccgcggaacaagaggaatgt 301  Q
    ||||||||||||||||  ||  ||||||||||||  ||| |||||| ||| ||||||||||| ||||||| |||||||||||   |||||||||||||||    
T  278541 atgcatttccttttccaccacggtttatggtttggattttgattttctgaaattctccttgtcatttgatattataggtcccaaagaacaagaggaatgt 278640  T
Q  302 taactgtagaaagaatgtaagatgggcttctatatgcactgaagagaat 350  Q
    ||| ||||| ||||   | || || ||||||||| ||||||||||||||    
T  278641 taaatgtaggaagatgattaggtgtgcttctataagcactgaagagaat 278689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 350 - 503
Target Start/End: Original strand, 37658732 - 37658878
Alignment:
Q  350 tgttagtttgttttaattcaagtttag-tttagtgataatcacaatcaatggttaattac-attttgttttagtttgttatgaagtttgttacaagtttg 447  Q
    ||||||||||||||||||||||||||| |||||| ||||||| ||||| |||||||| || | |||||||||| ||||||||           |||||||    
T  37658732 tgttagtttgttttaattcaagtttagttttagtcataatcataatcagtggttaatcacaagtttgttttagcttgttatg-----------aagtttg 37658820  T
Q  448 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  37658821 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 37658878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 398 - 472
Target Start/End: Complemental strand, 20808749 - 20808675
Alignment:
Q  398 tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctag 472  Q
    |||||||| |||||| |||| |||||||||||||||| ||||||||||||||||||||||  | |||||||||||    
T  20808749 tggttaatcacatttagtttcagtttgttatgaagttagttacaagtttgttagaggttaacaaataagatctag 20808675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 278393 - 278511
Alignment:
Q  65 ttctgaaccagaagag-ataaaacaagcagcacagaaaagtcaggaaaaagatgtaggaacttgaatgaggttgacaaacacaag--ccgtaaatcttct 161  Q
    |||||||||||||||| ||||||| |  ||||||||||| ||||||||||||| ||||| ||  ||||||| | ||||||| |||  || | ||||||||    
T  278393 ttctgaaccagaagaggataaaaccacaagcacagaaaattcaggaaaaagatctaggagctcaaatgagg-taacaaacagaaggcccatgaatcttct 278491  T
Q  162 aaatatttcacttactactg 181  Q
    |||| | || ||||||||||    
T  278492 aaatgtctcccttactactg 278511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 548 - 597
Target Start/End: Original strand, 37658919 - 37658969
Alignment:
Q  548 tatgtagaattaataaaggtcaattacaattt-catcataactttcttctc 597  Q
    |||||||||| ||||||| ||| ||||||||| ||||||||||||||||||    
T  37658919 tatgtagaatcaataaagatcatttacaattttcatcataactttcttctc 37658969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 548 - 597
Target Start/End: Original strand, 37682223 - 37682273
Alignment:
Q  548 tatgtagaattaataaaggtcaattacaattt-catcataactttcttctc 597  Q
    |||||||||| ||||||| ||| ||||||||| ||||||||||||||||||    
T  37682223 tatgtagaatcaataaagatcatttacaattttcatcataactttcttctc 37682273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 506
Target Start/End: Original strand, 5733082 - 5733114
Alignment:
Q  474 gtttgttacattgcttgtgcttcaagcaactta 506  Q
    ||||||||| |||||||||||||||||||||||    
T  5733082 gtttgttactttgcttgtgcttcaagcaactta 5733114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 349 - 597
Target Start/End: Original strand, 27761396 - 27761645
Alignment:
Q  349 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  27761396 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgt 27761495  T
Q  449 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 548  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27761496 tagaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttat 27761595  T
Q  549 atgtagaattaataaaggtcaattacaa-tttcatcataactttcttctc 597  Q
    ||||||||| ||||||| ||| |||||| |||||||||||||||||||||    
T  27761596 atgtagaatcaataaagatcatttacaattttcatcataactttcttctc 27761645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 350 - 597
Target Start/End: Original strand, 27756846 - 27757094
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||||||    
T  27756846 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcgcattctgttttagtttgttatgaagtttgttacaagtttgtt 27756945  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 549  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27756946 agaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttata 27757045  T
Q  550 tgtagaattaataaaggtcaattacaa-tttcatcataactttcttctc 597  Q
    |||||||| ||||||| ||| |||||| |||||||||||||||||||||    
T  27757046 tgtagaatcaataaagatcatttacaattttcatcataactttcttctc 27757094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 356 - 587
Target Start/End: Complemental strand, 47419729 - 47419498
Alignment:
Q  356 tttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggt 455  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47419729 tttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttcttagaggt 47419630  T
Q  456 tagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtaga 555  Q
    ||| |||||| |||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||    
T  47419629 tagcagataatatctagagtttgttacattgtttgtgtttcaagcaacttagctagacattgtatataagctacctcctttgtatattttcgtatgtaga 47419530  T
Q  556 attaataaaggtcaattacaatttcatcataa 587  Q
    || ||||||  |||||||||||||||||||||    
T  47419529 atcaataaaaatcaattacaatttcatcataa 47419498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 350 - 597
Target Start/End: Original strand, 22901154 - 22901403
Alignment:
Q  350 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 447  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  22901154 tgttagtttgttttaattaaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 22901253  T
Q  448 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttg 547  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||    
T  22901254 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttg 22901352  T
Q  548 tatgtagaattaataaaggtca-attacaatttcatcataactttcttctc 597  Q
    |||||||||| ||||||| |||  |||||| ||||||||||||||||||||    
T  22901353 tatgtagaatcaataaagatcattttacaaattcatcataactttcttctc 22901403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 349 - 531
Target Start/End: Original strand, 35705633 - 35705815
Alignment:
Q  349 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgtt-atgaagtttgttacaagtttg 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||| |||||||||||||||||    
T  35705633 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgtttatggagtttgttacaagtttg 35705732  T
Q  448 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacct 531  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  35705733 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaac-cagctagacattgtatataagctacct 35705815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 350 - 545
Target Start/End: Complemental strand, 7466669 - 7466485
Alignment:
Q  350 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 448  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||            |||||||||    
T  7466669 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacattttgttttagtttgtta------------caagtttgt 7466582  T
Q  449 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
    |||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  7466581 tagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 7466485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 363 - 539
Target Start/End: Complemental strand, 733811 - 733634
Alignment:
Q  363 taattcaagtttagtttagtgataatcacaatcaa-tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtag 461  Q
    |||||||||||||| |||||||||||||   | || |||||||| |||| ||   ||||||||||||||| |||||||||| ||||||||||||||| |     
T  733811 taattcaagtttagattagtgataatcatgtttaaatggttaatcacatattcagttagtttgttatgaaatttgttacaattttgttagaggttagcaa 733712  T
Q  462 ataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 539  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  733711 ataagatctagagtttgttacattgcttgtgcttcgagcaacttagctagacattgtatataagctacctcctttgta 733634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 349 - 503
Target Start/End: Complemental strand, 7940241 - 7940083
Alignment:
Q  349 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 446  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  7940241 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 7940142  T
Q  447 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  7940141 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7940083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 350 - 503
Target Start/End: Complemental strand, 7944793 - 7944636
Alignment:
Q  350 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 447  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  7944793 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7944694  T
Q  448 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  7944693 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7944636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 362 - 522
Target Start/End: Complemental strand, 13828248 - 13828087
Alignment:
Q  362 ttaattcaagtttagtttagtgataatcacaatcaat-ggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagta 460  Q
    ||||||||||||||  |||||||||||||   | | | ||||||| |||||||  ||| ||||||| ||||||||||||||||||||||||||  ||       
T  13828248 ttaattcaagtttaccttagtgataatcatgtttagttggttaatcacattttcattttgtttgttctgaagtttgttacaagtttgttagagtgtatct 13828149  T
Q  461 gataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatat 522  Q
     |||| |  ||| || |||||||||||||||||||||||| || || ||||||| |||||||    
T  13828148 aataatagttagggtctgttacattgcttgtgcttcaagctacctaactagatagtgtatat 13828087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 362 - 458
Target Start/End: Original strand, 37355573 - 37355669
Alignment:
Q  362 ttaattcaagtttagtttagtgataatcacaatcaatggttaattacatt-ttgttttagtttgttatgaagtttgttacaagtttgttagaggttag 458  Q
    ||||||||||||||  | ||||||||||||| | | |||||||| | ||| ||| ||||||||||||||||  ||||||||||||| |||||| ||||    
T  37355573 ttaattcaagtttacct-agtgataatcacacttagtggttaatcatattattgctttagtttgttatgaaagttgttacaagtttcttagagattag 37355669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 549 - 597
Target Start/End: Complemental strand, 7940041 - 7939993
Alignment:
Q  549 atgtagaattaataaaggtcaattacaatttcatcataactttcttctc 597  Q
    ||||||||| ||||||| ||| |||||| ||||||||||||||||||||    
T  7940041 atgtagaatcaataaagatcatttacaaattcatcataactttcttctc 7939993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 549 - 597
Target Start/End: Complemental strand, 7944594 - 7944546
Alignment:
Q  549 atgtagaattaataaaggtcaattacaatttcatcataactttcttctc 597  Q
    ||||||||| ||||||| ||| |||||| ||||||||||||||||||||    
T  7944594 atgtagaatcaataaagatcatttacaaattcatcataactttcttctc 7944546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 203; Significance: 1e-110; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 349 - 597
Target Start/End: Original strand, 21847108 - 21847358
Alignment:
Q  349 atgttagtttgtttt-aattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagttt 446  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  21847108 atgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagttt 21847207  T
Q  447 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 546  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21847208 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 21847307  T
Q  547 gtatgtagaattaataaaggtcaattacaatttcatcataactttcttctc 597  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||||||    
T  21847308 gtatatagaatcaataaagatcatttacaatttcatcataactttcttctc 21847358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 349 - 597
Target Start/End: Original strand, 21850198 - 21850448
Alignment:
Q  349 atgttagtttgtttt-aattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagttt 446  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  21850198 atgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagttt 21850297  T
Q  447 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 546  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21850298 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 21850397  T
Q  547 gtatgtagaattaataaaggtcaattacaatttcatcataactttcttctc 597  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||||||    
T  21850398 gtatatagaatcaataaagatcatttacaatttcatcataactttcttctc 21850448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 350 - 545
Target Start/End: Original strand, 9105275 - 9105470
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||    
T  9105275 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacattttgctttagtttgttatgaagtatgttacaagtttgtt 9105374  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
    ||||||||  | |||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||||||||| |||||    
T  9105375 agaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacctaactagacattgtatatgagctacctcctttgtatatttt 9105470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 350 - 545
Target Start/End: Complemental strand, 11004560 - 11004365
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| |||||||||||||| ||||||||||| ||||||||||||||||    
T  11004560 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgaataatcacattttgttttagcttgttatgaagattgttacaagtttgtt 11004461  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
    ||||||||| | ||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||    
T  11004460 agaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacctagctagacattgtatataagctacctcctttgtatatttt 11004365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 349 - 545
Target Start/End: Original strand, 43547722 - 43547920
Alignment:
Q  349 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgtttt-agtttgttatgaagtttgttacaagttt 446  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||    
T  43547722 atgttagcttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacattttgtttttagtttgttatgaagtttgttacaagttt 43547821  T
Q  447 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| |||||    
T  43547822 gttagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagcaagacattgtatataagctatctcctttgtatatttt 43547920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 350 - 545
Target Start/End: Original strand, 9697586 - 9697783
Alignment:
Q  350 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgtttt-agtttgttatgaagtttgttacaagtttg 447  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | || ||||| |||||||||||| |||||||||||||||||||||||||||||    
T  9697586 tgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgtttttagtttgttatgaagtttgttacaagtttg 9697685  T
Q  448 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
    ||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| |||||    
T  9697686 ttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatatttt 9697783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 349 - 503
Target Start/End: Complemental strand, 54172082 - 54171924
Alignment:
Q  349 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 446  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  54172082 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 54171983  T
Q  447 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  54171982 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 54171924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 349 - 503
Target Start/End: Complemental strand, 54167502 - 54167344
Alignment:
Q  349 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 446  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  54167502 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 54167403  T
Q  447 gttagaggttagtagataa--gatctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    |||||||||||  | ||||  |   ||||||||||||||||||||||||||||||||||    
T  54167402 gttagaggttaccaaataagggtgttagagtttgttacattgcttgtgcttcaagcaac 54167344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 350 - 503
Target Start/End: Complemental strand, 39399279 - 39399127
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| |||    
T  39399279 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 39399180  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    |||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  39399179 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 39399127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 426 - 546
Target Start/End: Original strand, 43554645 - 43554765
Alignment:
Q  426 tatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataag 525  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||||| ||||||||||| || ||||||||||||||  ||| ||||||||| ||    
T  43554645 tatgaagtttgttacaagtttgttagaggttaacaaataagatctagagtttattacattgcttctgtttcaagcaacttagtaagacattgtatatgag 43554744  T
Q  526 ctacctcctttgtacattttt 546  Q
    ||||||| |||||| ||||||    
T  43554745 ctacctcttttgtatattttt 43554765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 80 - 350
Target Start/End: Complemental strand, 24685444 - 24685192
Alignment:
Q  80 gataaaacaagcagcacagaaaagtcaggaaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttactac 179  Q
    |||||||| || |||| ||| || ||||||||||||  ||||| || || |||||| |||||||| ||||||  |||||||||||| || ||||||| ||    
T  24685444 gataaaaccagaagcagagagaattcaggaaaaagacctaggagctcgactgaggtagacaaacaaaagccgcgaatcttctaaatgttgcacttaccac 24685345  T
Q  180 tgtttttctctctccaaagttagatgcatttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctccttgttatttgattttatagg 279  Q
    ||||||||||||||                   |||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  24685344 tgtttttctctctct------------------ttttcctgcacagtttatggtttgtgtttgattttgtgagattcttctggttatttgattttatagg 24685263  T
Q  280 tcccgcggaacaagaggaatgttaactgtagaaagaatgtaagatgggcttctatatgcactgaagagaat 350  Q
    ||||   |||||||||||||||||| || |  |||||| | ||||| | || |||| |||| |||||||||    
T  24685262 tccccaagaacaagaggaatgttaaatgcatgaagaatatgagatgtggttttataagcacagaagagaat 24685192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 104 - 299
Target Start/End: Complemental strand, 24632035 - 24631841
Alignment:
Q  104 tcaggaaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttactactgtttttctctctccaaagttaga 203  Q
    |||||||||||||  |||| |||||||||||| |||| | |||||||  |||||||||||||||||||||||||| ||||| | ||||| | |||| | |    
T  24632035 tcaggaaaaagatccaggagcttgaatgaggtagacagatacaagccacaaatcttctaaatatttcacttactaatgtttct-tctcttccaagtgata 24631937  T
Q  204 tgcatttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctccttgttatttgattttataggtcccgcggaacaagaggaat 299  Q
    || ||||| ||||||  || | |||||||| ||| || |||||||||||||| |||  |||||||||||||||  |||||   |||||||||||||    
T  24631936 tggatttctttttccaacacaatttatggtctgttttcgattttgtgagattatcccggttatttgattttattagtcccaaagaacaagaggaat 24631841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 411 - 531
Target Start/End: Original strand, 755891 - 756012
Alignment:
Q  411 tttgttttagtttgttatgaagtttgttacaagtttgttagag-gttagtagataaga-tctagagtttgttacattgcttgtgcttcaagcaacttagc 508  Q
    |||||||||||||||| |||||||||||||||||||||||||| || | || |||| |   ||| ||||||||||||||||||||||||||| || || |    
T  755891 tttgttttagtttgttttgaagtttgttacaagtttgttagagtgtaacta-ataaaaggttagggtttgttacattgcttgtgcttcaagctacctaac 755989  T
Q  509 tagatattgtatataagctacct 531  Q
    |||||  ||||||||||||||||    
T  755990 tagatggtgtatataagctacct 756012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 349 - 427
Target Start/End: Original strand, 43554291 - 43554371
Alignment:
Q  349 atgttagtttgttttaattcaagtttag-tttagtgataatcacaatcaatggttaattacattttg-ttttagtttgtta 427  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| || ||| | |||||||| |||||||||||||    
T  43554291 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattagtcacattttgtttttagtttgtta 43554371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 207 - 282
Target Start/End: Complemental strand, 24682594 - 24682519
Alignment:
Q  207 atttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctccttgttatttgattttataggtcc 282  Q
    |||| ||||||||||| ||||||| ||||| |||||||||| |||||||||||| ||| |||||||||||||||||    
T  24682594 atttacttttcctgcacagtttattgtttgcgtttgattttatgagattctcctggttctttgattttataggtcc 24682519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 154 - 316
Target Start/End: Complemental strand, 24653664 - 24653501
Alignment:
Q  154 aatcttctaaatatttcacttactactgtttttctctctccaaagttagatgcatttcctttt--cctgcaaagtttatggtttgtgtttgattttgtg- 250  Q
    |||||||||||||||||||||||||||||||  || | |||| | | | |||||||| |||||  |||||| ||||||| || ||||||||||||| ||     
T  24653664 aatcttctaaatatttcacttactactgttt--ctttttccata-tgatatgcatttacttttttcctgcacagtttattgtgtgtgtttgattttatgc 24653568  T
Q  251 -agattctccttgttatttgattttataggtcccgcggaacaagaggaatgttaactgtagaaagaa 316  Q
     |||||||||| ||| |||||||||||||||||    |||  ||||||||||||| ||||| |||||    
T  24653567 gagattctcctggttctttgattttataggtccgaaagaaagagaggaatgttaaatgtaggaagaa 24653501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 398 - 503
Target Start/End: Complemental strand, 38175894 - 38175790
Alignment:
Q  398 tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttca 497  Q
    |||||||| |||||| |||| ||||||||||||| ||||||||||||| ||||||| ||||   ||||||| ||| ||||||||| | |||||| |||||    
T  38175894 tggttaatcacatttagtttcagtttgttatgaattttgttacaagttagttagagattagctcataagat-tagggtttgttacttagcttgtacttca 38175796  T
Q  498 agcaac 503  Q
    ||||||    
T  38175795 agcaac 38175790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 453
Target Start/End: Original strand, 755824 - 755857
Alignment:
Q  420 gtttgttatgaagtttgttacaagtttgttagag 453  Q
    ||||||| ||||||||||||||||||||||||||    
T  755824 gtttgttttgaagtttgttacaagtttgttagag 755857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 350 - 590
Target Start/End: Original strand, 39793831 - 39794070
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||||||    
T  39793831 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatctcattctgttttagtttgttatgaagtttgttacaagtttgtt 39793930  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 549  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||    
T  39793931 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttcata 39794029  T
Q  550 tgtagaattaataaaggtcaattacaatttcatcataactt 590  Q
    |||||||| ||||||| ||||||||| ||||||||||||||    
T  39794030 tgtagaatcaataaagatcaattacattttcatcataactt 39794070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 350 - 591
Target Start/End: Complemental strand, 16588635 - 16588394
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16588635 tgttagtttgttttaattcaagtttagtttagtgataatcacaataagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 16588536  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 549  Q
    ||||||||  | ||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  16588535 agaggttatcatataagatctagagtttgttacattgcttgtgttttaagcaacttagctagacattgtatataagctacctcctttgtatatttttgta 16588436  T
Q  550 tgtagaattaataaaggtcaattacaatttcatcataacttt 591  Q
    || ||||| |||||   |||||||||||||||||||||||||    
T  16588435 tggagaatcaataagaatcaattacaatttcatcataacttt 16588394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 349 - 597
Target Start/End: Original strand, 26316012 - 26316247
Alignment:
Q  349 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||            ||||||||||||||    
T  26316012 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgt 26316099  T
Q  449 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||    
T  26316100 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtata-ttttgt 26316198  T
Q  549 atgtagaattaataaaggtcaattacaatttcatcataactttcttctc 597  Q
    ||| ||||| ||||||| |||||||||||||||||||||||||||||||    
T  26316199 atgcagaatcaataaagatcaattacaatttcatcataactttcttctc 26316247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 350 - 597
Target Start/End: Original strand, 26311522 - 26311756
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||            |||||||||||||||    
T  26311522 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgtt 26311609  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 549  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | |||||||    
T  26311610 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtata-ttttgta 26311708  T
Q  550 tgtagaattaataaaggtcaattacaatttcatcataactttcttctc 597  Q
    || ||||| ||||||| |||||||||||||||||||||||||||||||    
T  26311709 tgcagaatcaataaagatcaattacaatttcatcataactttcttctc 26311756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 349 - 545
Target Start/End: Complemental strand, 43591979 - 43591783
Alignment:
Q  349 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||  || ||| ||||||||||||||||||||||||||||  ||||    
T  43591979 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcgcactttattttagtttgttatgaagtttgttacaatattgt 43591880  T
Q  449 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
    |||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||    
T  43591879 tagaggttagcaaataaaatctagagtttgttacattgcttgtgcttcaagcaacttggctagacattgtatataagctacctcctttgtatatttt 43591783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 349 - 503
Target Start/End: Original strand, 10504435 - 10504588
Alignment:
Q  349 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | || ||||| |||||| | || ||||||||||||| ||||||||||||| ||    
T  10504435 atgttagtttgttttaattcaagtttagtttagtgataatcacaattagtgattaatcacatttagattcagtttgttatgaattttgttacaagttagt 10504534  T
Q  449 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    ||||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  10504535 tagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 10504588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 506
Target Start/End: Original strand, 41879945 - 41879977
Alignment:
Q  474 gtttgttacattgcttgtgcttcaagcaactta 506  Q
    ||||||||| |||||||||||||||||||||||    
T  41879945 gtttgttactttgcttgtgcttcaagcaactta 41879977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 193; Significance: 1e-104; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 350 - 590
Target Start/End: Complemental strand, 8320199 - 8319960
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||||    
T  8320199 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacaatatgttttagtttgttatgaagtttgttacaagtttgtt 8320100  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 549  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||    
T  8320099 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagaaacttagctagatattgtatataagctacctcctttgtacatttct-ta 8320001  T
Q  550 tgtagaattaataaaggtcaattacaatttcatcataactt 590  Q
    |||||||| ||||||| |||||| || ||||||||||||||    
T  8320000 tgtagaatcaataaagatcaatttcattttcatcataactt 8319960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 349 - 591
Target Start/End: Complemental strand, 27552268 - 27552025
Alignment:
Q  349 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  27552268 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaggtttgt 27552169  T
Q  449 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt-g 547  Q
    || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27552168 taaacgttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttcg 27552069  T
Q  548 tatgtagaattaataaaggtcaattacaatttcatcataacttt 591  Q
    |||| ||||| |||||   |||||||||||||||||||||||||    
T  27552068 tatggagaatcaataagaatcaattacaatttcatcataacttt 27552025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 349 - 590
Target Start/End: Complemental strand, 8315662 - 8315421
Alignment:
Q  349 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  8315662 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 8315563  T
Q  448 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttg 547  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||      
T  8315562 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttca 8315464  T
Q  548 tatgtagaattaataaaggtcaattacaatttcatcataactt 590  Q
    |||||||||| ||||||| |||||| || ||||||||||||||    
T  8315463 tatgtagaatcaataaagatcaatttcattttcatcataactt 8315421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 350 - 591
Target Start/End: Original strand, 17779914 - 17780156
Alignment:
Q  350 tgttagtttgtttt-aattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 448  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  17779914 tgttagtttgttttgaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagtttgttaaaagtttgt 17780013  T
Q  449 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 548  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  17780014 tagaggctagtagataagatttagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctatctcctttgtacattttcgt 17780113  T
Q  549 atgtagaattaataaaggtcaattacaatttcatcataacttt 591  Q
    ||||||||| |||||   |||||||||||||||||||||||||    
T  17780114 atgtagaatcaataagaatcaattacaatttcatcataacttt 17780156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 350 - 545
Target Start/End: Complemental strand, 17096431 - 17096236
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17096431 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 17096332  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17096331 agaggttagcagataagatctatagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtacatttt 17096236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 348 - 587
Target Start/End: Complemental strand, 27574886 - 27574657
Alignment:
Q  348 aatgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||            
T  27574886 aatgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgtta-------- 27574795  T
Q  448 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt- 546  Q
       |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  27574794 ---gaggttagcagataagatctaaagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgaacatttttc 27574698  T
Q  547 gtatgtagaattaataaaggtcaattacaatttcatcataa 587  Q
    ||||| | ||| |||||   ||||||||||||||| |||||    
T  27574697 gtatggaaaatcaataagaatcaattacaatttcaccataa 27574657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 350 - 539
Target Start/End: Complemental strand, 17895881 - 17895691
Alignment:
Q  350 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 448  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  17895881 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttattttagtttgttctgaagtttgttacaagtttgt 17895782  T
Q  449 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 539  Q
    |||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  17895781 tagaggttagcaaataagatctagaatttgttacattgcttgtgcttcaagcaacttagctaggcattgtatataagctacctcctttgta 17895691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 350 - 545
Target Start/End: Complemental strand, 14531945 - 14531749
Alignment:
Q  350 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 448  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||| ||||||    
T  14531945 tgttagtttgttttaattcaagtttagttttagttataatcacaatcaatgattaatcacattttgttttagttcgttatgaagtttgttacaggtttgt 14531846  T
Q  449 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
    |||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||  ||||| |||||||| |||||    
T  14531845 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttgaagcaacttagctagacattgtatatactctaccacctttgtatatttt 14531749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 349 - 539
Target Start/End: Complemental strand, 17887001 - 17886816
Alignment:
Q  349 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 447  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||| ||||       |||||||    
T  17887001 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttgttttagtttgttataaagta------aagtttg 17886908  T
Q  448 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 539  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  17886907 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcagcttagctagacattgtatataagctacctcctttgta 17886816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 503
Target Start/End: Complemental strand, 6440979 - 6440865
Alignment:
Q  388 tcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgc 487  Q
    ||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| ||||||| ||||   ||||| | ||| ||||||||| | ||    
T  6440979 tcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggt-tagggtttgttacttagc 6440881  T
Q  488 ttgtgcttcaagcaac 503  Q
    |||| |||||||||||    
T  6440880 ttgtacttcaagcaac 6440865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 411 - 452
Target Start/End: Original strand, 17163689 - 17163730
Alignment:
Q  411 tttgttttagtttgttatgaagtttgttacaagtttgttaga 452  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  17163689 tttgttttagtttgttttgaagtttgttacaagttggttaga 17163730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 453
Target Start/End: Complemental strand, 7888250 - 7888212
Alignment:
Q  415 ttttagtttgttatgaagtttgttacaagtttgttagag 453  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  7888250 ttttagtttgttttgaagtttgttacaactttgttagag 7888212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 452
Target Start/End: Original strand, 17159610 - 17159700
Alignment:
Q  363 taattcaagtttagtttagtgataatcacaatcaatgg-ttaattacattttgttttagtttgttatgaagtttgttacaagtttgttaga 452  Q
    |||||||||||||| |||||||||||||  || | | | || || | | |||||||||||||||| ||| |||||||||||||| ||||||    
T  17159610 taattcaagtttagattagtgataatcatgattagttgattgatcatactttgttttagtttgttttgacgtttgttacaagttggttaga 17159700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 349 - 597
Target Start/End: Original strand, 31670089 - 31670337
Alignment:
Q  349 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 447  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  31670089 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttg 31670188  T
Q  448 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttg 547  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| | |||||    
T  31670189 ttagaggttagcagataagatctagagtttgttacattgcttctgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttg 31670287  T
Q  548 tatgtagaattaataaaggtcaattacaatttcatcataactttcttctc 597  Q
     ||||||||| ||||||| ||| |||||||||||||||||||||||||||    
T  31670288 aatgtagaatcaataaagatcatttacaatttcatcataactttcttctc 31670337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 349 - 545
Target Start/End: Original strand, 53722006 - 53722202
Alignment:
Q  349 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  53722006 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 53722105  T
Q  449 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  53722106 tagaggctagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctatatattgtatataagctacctcctttgtacatttt 53722202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 350 - 545
Target Start/End: Complemental strand, 10317220 - 10317025
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||| |||||| ||||||||||||||||||||||||||||||||    
T  10317220 tgttagtttgttttaattcaagtttagtttagttataatcacaatcagtgattaatcacactttgttgtagtttgttatgaagtttgttacaagtttgtt 10317121  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  10317120 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 10317025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 349 - 545
Target Start/End: Complemental strand, 8892779 - 8892582
Alignment:
Q  349 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 447  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  8892779 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaaatttg 8892680  T
Q  448 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
    |||||| |||| | ||||||| ||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  8892679 ttagagattagcaaataagatatagagtttgttacatcgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 8892582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 350 - 545
Target Start/End: Original strand, 27186142 - 27186341
Alignment:
Q  350 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgtttt--agttt-gttatgaagtttgttacaagtt 445  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | || ||||| ||||||||||||  ||||| ||||||||||||||||||||||    
T  27186142 tgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgttttttagttttgttatgaagtttgttacaagtt 27186241  T
Q  446 tgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
    ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| |||||    
T  27186242 tgttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatatttt 27186341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 343 - 545
Target Start/End: Complemental strand, 43683826 - 43683636
Alignment:
Q  343 aagagaatgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaa 442  Q
    |||| |||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||       
T  43683826 aagacaatgttagtt-gttttaattcaagtttattttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgtta--- 43683731  T
Q  443 gtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacat 542  Q
            |||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||    
T  43683730 --------gaggttagcaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacatcctttgtatat 43683639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 349 - 503
Target Start/End: Original strand, 44151557 - 44151715
Alignment:
Q  349 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 446  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  44151557 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 44151656  T
Q  447 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  44151657 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44151715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 350 - 503
Target Start/End: Original strand, 3770842 - 3770999
Alignment:
Q  350 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 447  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  3770842 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 3770941  T
Q  448 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  3770942 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3770999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 350 - 503
Target Start/End: Original strand, 44147023 - 44147180
Alignment:
Q  350 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 447  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  44147023 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44147122  T
Q  448 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  44147123 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44147180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 349 - 545
Target Start/End: Complemental strand, 50628088 - 50627904
Alignment:
Q  349 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 447  Q
    ||||||||||||||||||||||| ||||||| |||| |||||||||||| || ||||| || |||| |||||||||||||            ||||||||    
T  50628088 atgttagtttgttttaattcaagattagttttagtg-taatcacaatcagtgattaatcacttttttttttagtttgtta------------caagtttg 50628002  T
Q  448 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
    ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  50628001 ttagaggttagcaaataagatctagagtttgttacattgcttgtacttcaagcaacttagctagacattgtatataagctacctcctttatatatttt 50627904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 350 - 503
Target Start/End: Original strand, 41884925 - 41885076
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    |||| |||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| |||    
T  41884925 tgttggtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaa-tttgttacaagttagtt 41885023  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    |||| ||||   ||||||| ||| ||||||||| | |||||| |||||||||||    
T  41885024 agagattagctcataagat-tagggtttgttacttagcttgtacttcaagcaac 41885076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 446 - 545
Target Start/End: Original strand, 35842843 - 35842942
Alignment:
Q  446 tgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||||    
T  35842843 tgttagaggttagcaaataagatctagagtttgttacaatgcttgtgcttcaagcaacttagttagacattgtatataaactacctcctttgtatatttt 35842942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 349 - 503
Target Start/End: Original strand, 31359150 - 31359303
Alignment:
Q  349 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 448  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| |||||| | || |||||| |||||| ||||||||||||| ||    
T  31359150 atgttagtttgttttaattcaagtttagtttaatgataatcacaattagtggttaatcacatttagattcagtttgctatgaattttgttacaagttagt 31359249  T
Q  449 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    ||||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  31359250 tagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 31359303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 348 - 503
Target Start/End: Complemental strand, 49274670 - 49274517
Alignment:
Q  348 aatgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 447  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| |    
T  49274670 aatgttagtttgttttaattcaagtttagtttagtgatgatcataattagtggttaatcacatttagattcagtttgttatgaa-tttgttacaagttag 49274572  T
Q  448 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    |||||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  49274571 ttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 49274517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 350 - 445
Target Start/End: Original strand, 31354678 - 31354772
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtt 445  Q
    |||||||||||||||||| |||||||||||||||||||| ||||| | |||||||| |||||| | || || |||||||||| |||||||||||||    
T  31354678 tgttagtttgttttaatttaagtttagtttagtgataattacaattagtggttaatcacatttagattcag-ttgttatgaattttgttacaagtt 31354772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 384 - 544
Target Start/End: Original strand, 53785880 - 53786039
Alignment:
Q  384 ataatcacaatcaatggttaattacattt--tgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgtta 481  Q
    ||||||||| ||| |||||||| ||||||  |||||| |||||||| ||| ||||||||||||||||||||   |||   |||   | ||| ||||||||    
T  53785880 ataatcacactcagtggttaatcacatttagtgtttttgtttgttaagaa-tttgttacaagtttgttagaaactagcttatatagt-tagggtttgtta 53785977  T
Q  482 cattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattt 544  Q
    ||| |||||||||||||||||| || |||| | | ||||||||||||||| ||||||||||||    
T  53785978 catagcttgtgcttcaagcaacctaactagttctagtatataagctacct-ctttgtacattt 53786039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 453
Target Start/End: Complemental strand, 45976274 - 45976222
Alignment:
Q  401 ttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagag 453  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  45976274 ttaatcacatcttgttttagtttgttttgaagtttgttacaagttttttagag 45976222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 551 - 597
Target Start/End: Original strand, 44147223 - 44147269
Alignment:
Q  551 gtagaattaataaaggtcaattacaatttcatcataactttcttctc 597  Q
    ||||||| ||||||| ||| |||||||||||||||||||||||||||    
T  44147223 gtagaatcaataaagatcatttacaatttcatcataactttcttctc 44147269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 551 - 597
Target Start/End: Original strand, 44151758 - 44151804
Alignment:
Q  551 gtagaattaataaaggtcaattacaatttcatcataactttcttctc 597  Q
    ||||||| ||||||| ||| |||||||||||||||||||||||||||    
T  44151758 gtagaatcaataaagatcatttacaatttcatcataactttcttctc 44151804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 427
Target Start/End: Original strand, 35842797 - 35842847
Alignment:
Q  377 tttagtgataatcacaatcaatggttaattacattttgttttagtttgtta 427  Q
    |||||||||||||||||||| || ||||| ||| ||||||||||| |||||    
T  35842797 tttagtgataatcacaatcagtgattaatcacactttgttttagtatgtta 35842847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 349 - 597
Target Start/End: Original strand, 8055391 - 8055639
Alignment:
Q  349 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||| |||||||||    
T  8055391 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttgcaagtttgt 8055490  T
Q  449 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |    
T  8055491 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttcat 8055589  T
Q  549 atgtagaattaataaaggtcaattacaa-tttcatcataactttcttctc 597  Q
    ||||||||| ||||||| ||  |||||| |||||||||||||||||||||    
T  8055590 atgtagaatcaataaagatcttttacaattttcatcataactttcttctc 8055639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 350 - 597
Target Start/End: Original strand, 8050839 - 8051086
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||||||||||||||    
T  8050839 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttacaagtttgtt 8050938  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 549  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||  ||    
T  8050939 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctgcctcctttgtaca-tttcata 8051037  T
Q  550 tgtagaattaataaaggtcaattacaa-tttcatcataactttcttctc 597  Q
    |||||||| ||||||| ||  |||||| |||||||||||||||||||||    
T  8051038 tgtagaatcaataaagatcttttacaattttcatcataactttcttctc 8051086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 350 - 591
Target Start/End: Complemental strand, 6463583 - 6463354
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||            ||||||||||    
T  6463583 tgttagtttgtcttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgtta------------caagtttgtt 6463496  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 549  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  6463495 agaggttagtagataagatctagagtttgttacattatttgtgcttcaagcaacctagctagatattgtatataagctacctcctttgtacattttagta 6463396  T
Q  550 tgtagaattaataaaggtcaattacaatttcatcataacttt 591  Q
    |||||||| ||||||| |||||||||||||||||||||||||    
T  6463395 tgtagaatcaataaagatcaattacaatttcatcataacttt 6463354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 350 - 545
Target Start/End: Complemental strand, 12999622 - 12999426
Alignment:
Q  350 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 448  Q
    |||||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12999622 tgttagtttgttttaatttaagtttagttttagtgataataacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 12999523  T
Q  449 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 545  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||    
T  12999522 tagaggttagcagataagatctagagtttgttacattacttgtgcttcaagcaacttagctagacattgtatataagctatctcctttgtatatttt 12999426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 349 - 503
Target Start/End: Original strand, 36670502 - 36670660
Alignment:
Q  349 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 446  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  36670502 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 36670601  T
Q  447 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  36670602 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36670660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 349 - 503
Target Start/End: Original strand, 36675050 - 36675208
Alignment:
Q  349 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 446  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  36675050 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 36675149  T
Q  447 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  36675150 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36675208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 350 - 512
Target Start/End: Complemental strand, 13271131 - 13270980
Alignment:
Q  350 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 448  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| ||| ||||||||||||||            ||||||||    
T  13271131 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacactttattttagtttgttat------------aagtttgt 13271044  T
Q  449 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctaga 512  Q
    |||||||||||| |||||||||| |||||||||||||| || ||||||||||||||||||||||    
T  13271043 tagaggttagtaaataagatctaaagtttgttacattgtttttgcttcaagcaacttagctaga 13270980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 349 - 503
Target Start/End: Complemental strand, 35950596 - 35950443
Alignment:
Q  349 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| ||    
T  35950596 atgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttaggttcagtttgttatgaattttgttacaagttagt 35950497  T
Q  449 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    ||||| ||||    |||| | ||| ||||||||| | |||||| |||||||||||    
T  35950496 tagagattagctcgtaaggt-tagggtttgttacttagcttgtacttcaagcaac 35950443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 350 - 503
Target Start/End: Original strand, 41093824 - 41093976
Alignment:
Q  350 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 449  Q
    |||| |||||||||||||||| ||||||||||||||||||||||| | || ||||| | |||| | || ||||||||||||| |||||||||| || |||    
T  41093824 tgttggtttgttttaattcaaatttagtttagtgataatcacaattagtgattaatcatatttagattcagtttgttatgaattttgttacaaattagtt 41093923  T
Q  450 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    |||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  41093924 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 41093976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 363 - 450
Target Start/End: Original strand, 29767953 - 29768041
Alignment:
Q  363 taattcaagtttagtttagtgataatcacaatcaa-tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtta 450  Q
    ||||||||||||||||||||||||||||  || || || || || ||| |||||||||||||||| | |||||||||||||||| ||||    
T  29767953 taattcaagtttagtttagtgataatcatgattaattgattgatcacactttgttttagtttgttttaaagtttgttacaagttggtta 29768041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 415 - 503
Target Start/End: Original strand, 34590280 - 34590366
Alignment:
Q  415 ttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| | || |||  ||| |||||||| || |||||||||| |||||||    
T  34590280 ttttagtttgttatgaa-tttgttacaagtttgttagagattagcatat-agagttagggtttgttatatagcttgtgctttaagcaac 34590366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 441
Target Start/End: Complemental strand, 27403733 - 27403696
Alignment:
Q  404 attacattttgttttagtttgttatgaagtttgttaca 441  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  27403733 attacactttgttttagtttgttttgaagtttgttaca 27403696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 349 - 503
Target Start/End: Original strand, 2979 - 3137
Alignment:
Q  349 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 446  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  2979 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 3078  T
Q  447 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  3079 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 349 - 503
Target Start/End: Original strand, 7505 - 7662
Alignment:
Q  349 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 447  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||    
T  7505 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttg 7604  T
Q  448 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||| ||||||||||    
T  7605 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgtttcaagcaac 7662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 7704 - 7753
Alignment:
Q  549 atgtagaattaataaaggtcaattacaattt-catcataactttcttctc 597  Q
    ||||||||| ||||||| ||| ||||||||| ||||||||||||||||||    
T  7704 atgtagaatcaataaagatcatttacaattttcatcataactttcttctc 7753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 349 - 503
Target Start/End: Complemental strand, 45023 - 44865
Alignment:
Q  349 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 446  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  45023 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 44924  T
Q  447 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  44923 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 350 - 503
Target Start/End: Complemental strand, 49602 - 49445
Alignment:
Q  350 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 447  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  49602 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 49503  T
Q  448 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 503  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  49502 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 49445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 548 - 597
Target Start/End: Complemental strand, 44824 - 44775
Alignment:
Q  548 tatgtagaattaataaaggtcaattacaatttcatcataactttcttctc 597  Q
    |||||||||| ||||||| ||| |||||| ||||||||||||||||||||    
T  44824 tatgtagaatcaataaagatcatttacaaattcatcataactttcttctc 44775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 548 - 597
Target Start/End: Complemental strand, 49404 - 49355
Alignment:
Q  548 tatgtagaattaataaaggtcaattacaatttcatcataactttcttctc 597  Q
    |||||||||| ||||||| ||| |||||| ||||||||||||||||||||    
T  49404 tatgtagaatcaataaagatcatttacaaattcatcataactttcttctc 49355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University