View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14740_low_12 (Length: 283)

Name: NF14740_low_12
Description: NF14740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14740_low_12
NF14740_low_12
[»] chr6 (34 HSPs)
chr6 (1-176)||(5000608-5000783)
chr6 (45-162)||(9027124-9027241)
chr6 (45-174)||(9107354-9107483)
chr6 (45-174)||(16766643-16766772)
chr6 (45-176)||(5970090-5970215)
chr6 (45-176)||(10339107-10339239)
chr6 (45-176)||(10294053-10294184)
chr6 (64-151)||(30866151-30866238)
chr6 (45-163)||(10888969-10889087)
chr6 (61-157)||(9629345-9629441)
chr6 (45-176)||(18367783-18367913)
chr6 (86-157)||(19040339-19040410)
chr6 (55-157)||(5732511-5732613)
chr6 (74-156)||(9658854-9658936)
chr6 (45-142)||(7938062-7938159)
chr6 (62-151)||(13851699-13851788)
chr6 (63-168)||(34073337-34073442)
chr6 (62-142)||(7977846-7977926)
chr6 (169-225)||(21150921-21150977)
chr6 (63-142)||(34595098-34595177)
chr6 (83-157)||(7265594-7265668)
chr6 (82-176)||(9195736-9195830)
chr6 (45-123)||(21395342-21395420)
chr6 (79-176)||(4040446-4040543)
chr6 (45-142)||(8805588-8805685)
chr6 (98-171)||(8931589-8931662)
chr6 (45-134)||(32299221-32299310)
chr6 (64-128)||(853889-853953)
chr6 (94-162)||(9025490-9025558)
chr6 (107-159)||(11784215-11784267)
chr6 (63-142)||(13360388-13360467)
chr6 (98-168)||(26562688-26562758)
chr6 (72-142)||(31579241-31579311)
chr6 (79-128)||(20371140-20371189)
[»] chr7 (33 HSPs)
chr7 (45-156)||(17851377-17851488)
chr7 (62-126)||(598171-598235)
chr7 (88-176)||(32308109-32308197)
chr7 (45-176)||(26329364-26329495)
chr7 (63-171)||(19206014-19206122)
chr7 (67-142)||(26733272-26733347)
chr7 (64-142)||(27945006-27945084)
chr7 (45-162)||(5235932-5236049)
chr7 (63-135)||(11722121-11722193)
chr7 (64-176)||(24339607-24339719)
chr7 (45-164)||(1433400-1433519)
chr7 (45-103)||(1885519-1885577)
chr7 (88-157)||(20549780-20549849)
chr7 (43-136)||(21141004-21141097)
chr7 (45-142)||(30730983-30731080)
chr7 (63-142)||(43249957-43250036)
chr7 (45-142)||(9778454-9778543)
chr7 (98-142)||(29787385-29787429)
chr7 (66-134)||(36297369-36297436)
chr7 (82-157)||(9482917-9482992)
chr7 (79-158)||(22484005-22484084)
chr7 (79-157)||(3721074-3721151)
chr7 (73-176)||(8842321-8842420)
chr7 (45-142)||(21880100-21880195)
chr7 (88-154)||(22868031-22868097)
chr7 (72-142)||(24105651-24105721)
chr7 (67-128)||(2425763-2425824)
chr7 (66-123)||(31808544-31808600)
chr7 (88-157)||(42720891-42720960)
chr7 (73-122)||(49107795-49107844)
chr7 (55-95)||(13557807-13557847)
chr7 (80-156)||(21828407-21828483)
chr7 (98-142)||(23191895-23191939)
[»] scaffold0008 (1 HSPs)
scaffold0008 (51-176)||(263354-263479)
[»] chr4 (22 HSPs)
chr4 (45-142)||(23293002-23293099)
chr4 (43-176)||(30982860-30982990)
chr4 (45-176)||(903868-903999)
chr4 (46-179)||(847898-848031)
chr4 (49-142)||(13783231-13783324)
chr4 (45-114)||(20633431-20633500)
chr4 (45-142)||(24343453-24343550)
chr4 (75-176)||(38148707-38148808)
chr4 (74-142)||(22440616-22440684)
chr4 (62-142)||(36635287-36635367)
chr4 (98-157)||(8423719-8423778)
chr4 (63-142)||(21945467-21945546)
chr4 (45-128)||(33950082-33950165)
chr4 (82-176)||(4383351-4383444)
chr4 (66-163)||(5775353-5775452)
chr4 (91-176)||(24613683-24613768)
chr4 (88-168)||(35723374-35723455)
chr4 (100-175)||(21658797-21658872)
chr4 (67-142)||(40179652-40179727)
chr4 (89-150)||(23861439-23861500)
chr4 (98-151)||(40613449-40613502)
chr4 (98-142)||(1747211-1747255)
[»] chr1 (44 HSPs)
chr1 (45-165)||(38503266-38503386)
chr1 (45-142)||(398781-398878)
chr1 (45-142)||(34298382-34298479)
chr1 (67-162)||(20157346-20157441)
chr1 (45-158)||(2896121-2896234)
chr1 (98-176)||(9828043-9828121)
chr1 (62-136)||(15641052-15641126)
chr1 (98-176)||(25361885-25361963)
chr1 (45-162)||(7918207-7918324)
chr1 (79-176)||(16252868-16252965)
chr1 (62-127)||(40917714-40917779)
chr1 (45-164)||(1486703-1486822)
chr1 (45-142)||(37055872-37055968)
chr1 (103-176)||(44482234-44482307)
chr1 (51-167)||(17754263-17754379)
chr1 (45-176)||(6612153-6612284)
chr1 (46-133)||(9709767-9709854)
chr1 (64-175)||(10572572-10572683)
chr1 (64-142)||(1262849-1262927)
chr1 (88-142)||(36878450-36878504)
chr1 (91-176)||(9629882-9629967)
chr1 (81-142)||(12443476-12443537)
chr1 (45-142)||(16297299-16297396)
chr1 (75-136)||(16812519-16812580)
chr1 (88-141)||(17831548-17831601)
chr1 (99-168)||(34371714-34371782)
chr1 (71-175)||(5376483-5376587)
chr1 (88-167)||(27471557-27471636)
chr1 (72-135)||(36905970-36906033)
chr1 (72-142)||(5898282-5898352)
chr1 (72-134)||(6427323-6427385)
chr1 (45-127)||(10577766-10577848)
chr1 (45-142)||(13011231-13011329)
chr1 (102-176)||(21038086-21038160)
chr1 (100-150)||(28674801-28674851)
chr1 (81-142)||(40181855-40181914)
chr1 (79-136)||(2851002-2851058)
chr1 (79-176)||(6414984-6415080)
chr1 (45-174)||(31694694-31694823)
chr1 (62-142)||(15323126-15323206)
chr1 (45-142)||(18471244-18471343)
chr1 (98-142)||(25098571-25098615)
chr1 (62-142)||(31015006-31015086)
chr1 (88-136)||(40285676-40285724)
[»] chr8 (24 HSPs)
chr8 (45-168)||(24362192-24362315)
chr8 (45-176)||(22651922-22652053)
chr8 (45-176)||(29510286-29510417)
chr8 (45-142)||(37283826-37283923)
chr8 (45-176)||(2572038-2572169)
chr8 (45-142)||(926804-926901)
chr8 (62-175)||(28384977-28385090)
chr8 (82-151)||(34897068-34897137)
chr8 (66-134)||(13436988-13437056)
chr8 (79-134)||(36934650-36934705)
chr8 (70-151)||(27213518-27213599)
chr8 (106-158)||(14134706-14134758)
chr8 (79-174)||(29776016-29776109)
chr8 (45-96)||(43737875-43737926)
chr8 (64-142)||(25192363-25192441)
chr8 (64-142)||(31556962-31557039)
chr8 (93-142)||(4611528-4611577)
chr8 (99-136)||(18067956-18067993)
chr8 (45-114)||(24413604-24413673)
chr8 (91-176)||(29447092-29447177)
chr8 (45-142)||(44067462-44067559)
chr8 (105-157)||(3025557-3025609)
chr8 (79-151)||(31236584-31236656)
chr8 (98-142)||(39954295-39954339)
[»] chr5 (37 HSPs)
chr5 (51-158)||(12927606-12927713)
chr5 (66-168)||(22423802-22423904)
chr5 (64-125)||(19820427-19820488)
chr5 (100-176)||(12264811-12264887)
chr5 (48-136)||(13287421-13287509)
chr5 (66-142)||(22299497-22299572)
chr5 (45-136)||(6770489-6770580)
chr5 (45-156)||(17122995-17123105)
chr5 (79-153)||(7175024-7175098)
chr5 (99-173)||(25817495-25817569)
chr5 (62-176)||(37328826-37328940)
chr5 (98-174)||(3966502-3966578)
chr5 (45-142)||(15382423-15382522)
chr5 (88-144)||(19438332-19438388)
chr5 (62-142)||(21191072-21191152)
chr5 (45-141)||(26205777-26205873)
chr5 (54-157)||(16203796-16203899)
chr5 (45-128)||(19579647-19579730)
chr5 (44-134)||(41995416-41995506)
chr5 (62-134)||(41558707-41558779)
chr5 (88-175)||(6035472-6035558)
chr5 (45-176)||(6401444-6401575)
chr5 (74-141)||(15410465-15410532)
chr5 (46-157)||(30502389-30502500)
chr5 (46-157)||(30542732-30542843)
chr5 (81-124)||(38816729-38816772)
chr5 (63-142)||(4105221-4105302)
chr5 (88-174)||(21351889-21351975)
chr5 (64-114)||(22013379-22013429)
chr5 (67-141)||(34879318-34879392)
chr5 (62-128)||(42469184-42469250)
chr5 (65-142)||(6247588-6247665)
chr5 (45-114)||(25888339-25888408)
chr5 (102-150)||(17593730-17593778)
chr5 (79-151)||(27144443-27144515)
chr5 (98-142)||(27932234-27932278)
chr5 (98-142)||(28588690-28588734)
[»] chr3 (32 HSPs)
chr3 (45-136)||(3164047-3164138)
chr3 (66-176)||(16192732-16192842)
chr3 (45-142)||(24205057-24205154)
chr3 (62-142)||(4990983-4991063)
chr3 (62-142)||(8383220-8383300)
chr3 (63-142)||(28917965-28918044)
chr3 (64-136)||(4466622-4466694)
chr3 (45-128)||(10335316-10335399)
chr3 (85-136)||(13620786-13620837)
chr3 (88-142)||(1438793-1438847)
chr3 (64-142)||(8587037-8587115)
chr3 (100-173)||(8039820-8039893)
chr3 (45-142)||(15796310-15796407)
chr3 (45-142)||(34307796-34307893)
chr3 (66-134)||(14829657-14829724)
chr3 (45-157)||(25093448-25093560)
chr3 (63-167)||(39001996-39002100)
chr3 (98-157)||(7614416-7614475)
chr3 (98-157)||(7928449-7928508)
chr3 (79-142)||(11493377-11493440)
chr3 (64-163)||(32429375-32429474)
chr3 (102-157)||(49505155-49505210)
chr3 (88-142)||(15544682-15544736)
chr3 (45-133)||(750643-750732)
chr3 (81-134)||(5407271-5407324)
chr3 (45-94)||(7171448-7171497)
chr3 (98-163)||(11313795-11313860)
chr3 (67-176)||(11665912-11666021)
chr3 (105-174)||(28678309-28678378)
chr3 (45-142)||(35994754-35994850)
chr3 (100-176)||(1550141-1550217)
chr3 (99-151)||(10690269-10690321)
[»] chr2 (29 HSPs)
chr2 (72-151)||(23717999-23718078)
chr2 (72-151)||(24105671-24105750)
chr2 (45-128)||(31283994-31284077)
chr2 (45-176)||(34784964-34785095)
chr2 (44-142)||(21616707-21616805)
chr2 (45-142)||(18276467-18276564)
chr2 (81-150)||(22084840-22084909)
chr2 (45-142)||(28677854-28677952)
chr2 (64-118)||(33519751-33519805)
chr2 (62-142)||(28412313-28412393)
chr2 (88-156)||(31808066-31808134)
chr2 (72-142)||(30404866-30404936)
chr2 (99-176)||(44860320-44860397)
chr2 (50-110)||(18054852-18054912)
chr2 (45-174)||(24975309-24975429)
chr2 (66-142)||(31018557-31018633)
chr2 (62-176)||(17776551-17776664)
chr2 (67-142)||(21782834-21782909)
chr2 (79-142)||(39323244-39323307)
chr2 (72-157)||(18589171-18589254)
chr2 (45-95)||(18631462-18631512)
chr2 (74-175)||(36409612-36409711)
chr2 (98-136)||(37411266-37411304)
chr2 (101-142)||(25846743-25846784)
chr2 (88-141)||(29970566-29970619)
chr2 (98-142)||(1327977-1328021)
chr2 (80-176)||(4882678-4882774)
chr2 (62-134)||(18420458-18420530)
chr2 (82-158)||(21091706-21091782)
[»] scaffold0168 (1 HSPs)
scaffold0168 (46-175)||(20990-21119)
[»] scaffold0223 (1 HSPs)
scaffold0223 (64-166)||(20137-20239)
[»] scaffold0306 (1 HSPs)
scaffold0306 (64-136)||(13365-13437)
[»] scaffold0152 (1 HSPs)
scaffold0152 (64-136)||(21890-21962)
[»] scaffold0475 (1 HSPs)
scaffold0475 (45-123)||(3262-3340)
[»] scaffold0122 (1 HSPs)
scaffold0122 (62-172)||(8629-8739)
[»] scaffold0053 (1 HSPs)
scaffold0053 (45-142)||(8744-8841)
[»] scaffold0003 (1 HSPs)
scaffold0003 (63-176)||(241558-241671)
[»] scaffold1528 (1 HSPs)
scaffold1528 (51-167)||(987-1103)
[»] scaffold0652 (1 HSPs)
scaffold0652 (43-142)||(478-577)
[»] scaffold0007 (1 HSPs)
scaffold0007 (45-128)||(225298-225381)
[»] scaffold0036 (1 HSPs)
scaffold0036 (106-176)||(9729-9799)
[»] scaffold0018 (1 HSPs)
scaffold0018 (67-163)||(178813-178910)
[»] scaffold0123 (1 HSPs)
scaffold0123 (99-167)||(44516-44584)
[»] scaffold0004 (1 HSPs)
scaffold0004 (82-142)||(92790-92850)
[»] scaffold0188 (1 HSPs)
scaffold0188 (45-124)||(9486-9565)
[»] scaffold0024 (1 HSPs)
scaffold0024 (45-168)||(68232-68355)
[»] scaffold0044 (1 HSPs)
scaffold0044 (62-173)||(53147-53254)
[»] scaffold0020 (1 HSPs)
scaffold0020 (92-162)||(135308-135378)
[»] scaffold0021 (1 HSPs)
scaffold0021 (45-142)||(130428-130525)
[»] scaffold0085 (1 HSPs)
scaffold0085 (90-134)||(26384-26428)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 5000783 - 5000608
Alignment:
Q  1 tatgagaagaaattgaagaagaacataaagaggaggatgaactaatgaagcacagatacatacacggacaccggacatgacacggatactgacacatcga 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5000783 tatgagaagaaattgaagaagaacataaagacgaggatgaactaatgaagcacagatacatacacggacaccggacatgacacggatactgacacgtcga 5000684  T
Q  101 caccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacga 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5000683 caccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacga 5000608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 162
Target Start/End: Original strand, 9027124 - 9027241
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    ||||||||| |||||  |||||||| ||||||| |||||||| ||||||||  ||||||||||||||||| |||| |||||||| |||| || ||||| |    
T  9027124 atgaagcaccgatacggacacggactccggacacgacacggacactgacacgccgacaccgctaataatttgagataatcacataattccgtgtaattat 9027223  T
Q  145 atatgtcagtgtcatgtc 162  Q
    || |||| ||||| ||||    
T  9027224 atgtgtcggtgtcgtgtc 9027241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 174
Target Start/End: Complemental strand, 9107483 - 9107354
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    ||||||||| |||||  |||||||||||||||| |||||||| ||| ||||  |||||| |||||||||| || |||||||||  ||||||| |||||      
T  9107483 atgaagcacggatactgacacggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcacaaaattcagtgtaattac 9107384  T
Q  145 atatgtcagtgtcatgtcggtgtcagacac 174  Q
    |  |||| ||||| |||||||||| |||||    
T  9107383 aagtgtcggtgtcgtgtcggtgtcggacac 9107354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 174
Target Start/End: Original strand, 16766643 - 16766772
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    ||||||||  |||||  |||||||||||||||| |||| ||| ||||||||  |||||| |||||||||| || |||||||||| ||||||| |||||      
T  16766643 atgaagcatggatacggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattac 16766742  T
Q  145 atatgtcagtgtcatgtcggtgtcagacac 174  Q
    |  |||| ||||| |||||||||| |||||    
T  16766743 aagtgtcggtgtcgtgtcggtgtcggacac 16766772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 176
Target Start/End: Complemental strand, 5970215 - 5970090
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    |||||||||||||||  |||||||||||||||||||||||      ||||| ||||||| | |||||||| || |||||||||| ||||||| |||||      
T  5970215 atgaagcacagatacggacacggacaccggacatgacacg------gacacgtcgacacagttaataatttgaaaaaatcacataattcagtgtaattac 5970122  T
Q  145 atatgtcagtgtcatgtcggtgtcagacacga 176  Q
    | ||||  ||||| |||||||||| |||||||    
T  5970121 aaatgtgggtgtcgtgtcggtgtcggacacga 5970090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 176
Target Start/End: Complemental strand, 10339239 - 10339107
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagt-ataattt 143  Q
    ||||||||| |||||| ||| |||||| ||||| |||| | | ||||||||  ||||||||| | ||||| ||||||||||||| |||||||  |||||     
T  10339239 atgaagcacggatacagacatggacacaggacacgacatgaacactgacacgccgacaccgcgattaatttgagaaaatcacataattcagtgttaatta 10339140  T
Q  144 tatatgtcagtgtcatgtcggtgtcagacacga 176  Q
    ||| |||||||| | |||||||||| |||||||    
T  10339139 tatgtgtcagtgccgtgtcggtgtcggacacga 10339107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 10294053 - 10294184
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    ||||||||| |||||  ||||| |||||||||| ||||||||||||||||   ||| ||||||||||||| |||| |||| |||  |||| | ||||| |    
T  10294053 atgaagcacggatacggacacgaacaccggacacgacacggatactgacatgccgataccgctaataatttgagataatcgcatatttcaatgtaattat 10294152  T
Q  145 atatgtcagtgtcatgtcggtgtcagacacga 176  Q
    || |||| ||||| ||| |||||| |||||||    
T  10294153 atgtgtcggtgtcgtgttggtgtcggacacga 10294184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 151
Target Start/End: Complemental strand, 30866238 - 30866151
Alignment:
Q  64 acggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtc 151  Q
    |||||||||||||||||||| || || |||||| | ||||||||||||||| ||||||||||||| ||||| | ||||| ||| ||||    
T  30866238 acggacaccggacatgacactgacaccgacacaccaacaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgtc 30866151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 163
Target Start/End: Complemental strand, 10889087 - 10888969
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    ||||||||| ||| || ||||||||| |  |||||||||||| || ||||||| |||||||||||||||| || |||||||||| ||| ||| | ||| |    
T  10889087 atgaagcacggatgcagacacggacatcaaacatgacacggacaccgacacatagacaccgctaataatttgataaaatcacataatttagtgtgattat 10888988  T
Q  145 atatgtcagtgtcatgtcg 163  Q
    || ||| |||||| |||||    
T  10888987 atgtgttagtgtcgtgtcg 10888969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 157
Target Start/End: Original strand, 9629345 - 9629441
Alignment:
Q  61 tacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtc 157  Q
    ||||| ||||| ||||| |||||||||| ||||||  ||||||||| ||||||| ||||||||||||| ||||| | ||||| ||| |||| |||||    
T  9629345 tacacagacactggacacgacacggatattgacacgccgacaccgccaataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtc 9629441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 18367783 - 18367913
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    ||||||||| |||||  |||||||||||||||| |||| ||| || |||||  |||||| ||||||  ||  |||||||||||  || |||| ||||| |    
T  18367783 atgaagcacggatacggacacggacaccggacacgacatggacac-gacacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattat 18367881  T
Q  145 atatgtcagtgtcatgtcggtgtcagacacga 176  Q
    || |||| ||||| ||||||||||||||||||    
T  18367882 atgtgtcggtgtcgtgtcggtgtcagacacga 18367913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 19040339 - 19040410
Alignment:
Q  86 atactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtc 157  Q
    ||||||||||  ||||||||||||||||| ||||||||||||| ||||||| ||||| ||| |||| |||||    
T  19040339 atactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtctgtgtc 19040410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 5732613 - 5732511
Alignment:
Q  55 gatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagt 154  Q
    |||||| |||||||||| ||||| |||| ||| ||||||||  |||||||| |||||||| |||||||||||||  || ||| ||||| ||| |||| ||    
T  5732613 gatacagacacggacactggacacgacatggacactgacacgccgacaccgttaataatttgagaaaatcacatattttagtgtaattatatgtgtcggt 5732514  T
Q  155 gtc 157  Q
    |||    
T  5732513 gtc 5732511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 9658854 - 9658936
Alignment:
Q  74 gacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgt 156  Q
    |||| |||||||| ||||||||  |||||||||||||||||  |||||||||||| ||||||| ||||| ||| |||| ||||    
T  9658854 gacacgacacggacactgacacgccgacaccgctaataatttaagaaaatcacataattcagtgtaattatatttgtcggtgt 9658936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 7938062 - 7938159
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||| |||||  |||||||||||||||| |||| ||| ||||||||  |||||| |||||||||| || ||||||| || ||| ||| |||||    
T  7938062 atgaagcacggatacggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaatt 7938159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 13851699 - 13851788
Alignment:
Q  62 acacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtc 151  Q
    |||||||||  | ||| |||||||| |||||||| |||||||||||||||||| |||||||| || | ||||||| ||||| ||| ||||    
T  13851699 acacggacattgaacacgacacggacactgacacgtcgacaccgctaataatttgagaaaataacgtaattcagtgtaattatatgtgtc 13851788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 34073442 - 34073337
Alignment:
Q  63 cacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtc 162  Q
    ||||||||| ||||| |||||||| |||||||   | ||| ||||||||||| ||||||||| ||| ||||||| ||||| |||  ||| ||||| ||||    
T  34073442 cacggacactggacacgacacggacactgacatgccaacatcgctaataatttgagaaaatctcataattcagtgtaattatatgggtcggtgtcgtgtc 34073343  T
Q  163 ggtgtc 168  Q
    ||||||    
T  34073342 ggtgtc 34073337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 7977926 - 7977846
Alignment:
Q  62 acacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||||||||| ||||| |||| ||||||||||||  |||||| |||||||||| || ||||| |||| ||||||| |||||    
T  7977926 acacggacactggacacgacatggatactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaatt 7977846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 21150977 - 21150921
Alignment:
Q  169 agacacgaaacacaccttcaatgtgtcggtgcaacaaatatcatctcgaactgaaaa 225  Q
    ||||||| ||||| ||||||||||||  |||||||| ||||||||||||||||||||    
T  21150977 agacacggaacacgccttcaatgtgttagtgcaacatatatcatctcgaactgaaaa 21150921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 34595098 - 34595177
Alignment:
Q  63 cacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||||||||| |||||||| | ||||||  ||||||  ||||||||| || |||||||||| ||||||| |||||    
T  34595098 cacggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaatt 34595177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 7265668 - 7265594
Alignment:
Q  83 cggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtc 157  Q
    |||| ||||||||  | ||||||||||||||| ||||||||||||| ||||||| ||||| ||| |||| |||||    
T  7265668 cggacactgacacgccaacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtc 7265594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 9195830 - 9195736
Alignment:
Q  82 acggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacga 176  Q
    ||||||||  ||||||||||||  ||||||||| |||||||| |||| ||| ||| ||||| ||| |||| ||||| ||| |||||| |||||||    
T  9195830 acggatacgaacacatcgacactcctaataatttgagaaaatgacataatttagtgtaattatatgtgtcggtgtcgtgtaggtgtctgacacga 9195736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 21395420 - 21395342
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaat 123  Q
    ||||||||| |||||| |||| ||||||||| |||||| ||| || |||||  | ||||||||||||||| ||||||||    
T  21395420 atgaagcacggatacagacacagacaccggatatgacatggacaccgacacgccaacaccgctaataatttgagaaaat 21395342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 176
Target Start/End: Original strand, 4040446 - 4040543
Alignment:
Q  79 gacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacga 176  Q
    |||||||| ||| | ||| ||||||| |||||||||  |||||||| ||| ||||||||||||| |||||||| | ||| | ||| | ||||||||||    
T  4040446 gacacggacacttaaacaccgacaccactaataatttaagaaaatcgcattattcagtataattatatatgtcggcgtcgtctcgatatcagacacga 4040543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 8805685 - 8805588
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||  |||||||||||  ||||| |||| ||||| || || ||||| ||| ||| |||||||||| ||||||||||||| ||| ||| |||||    
T  8805685 atgaagcatggatacatacacaaacaccagacacgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacataatttagtgtaatt 8805588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 8931662 - 8931589
Alignment:
Q  98 cgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcaga 171  Q
    |||||| ||||| |||| |||||||| |||| ||||||||||||| ||| ||||  |||| |||||||||||||    
T  8931662 cgacacagctaaaaatttgagaaaataacataattcagtataattatatgtgtcgatgtcgtgtcggtgtcaga 8931589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 32299221 - 32299310
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattca 134  Q
    ||||||||| |||||| |||| |||||| ||||| ||||  ||||||||||| | || | | |||||||| ||||||||||||| |||||    
T  32299221 atgaagcacggatacagacacagacaccagacataacacaaatactgacacaccaaccctgataataatttgagaaaatcacataattca 32299310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 853953 - 853889
Alignment:
Q  64 acggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacat 128  Q
    |||||||||||||| ||||||||| |||||||  ||||||  ||||||||| || ||||||||||    
T  853953 acggacaccggacacgacacggatgctgacacgccgacacaactaataatttgaaaaaatcacat 853889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 9025558 - 9025490
Alignment:
Q  94 acatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtc 162  Q
    |||| ||||| |||||||||| ||||||||||||| ||||||| ||||| ||| |||| ||||| ||||    
T  9025558 acatggacactgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtc 9025490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 11784267 - 11784215
Alignment:
Q  107 taataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcat 159  Q
    |||||||| ||||||||||||||| ||||| ||||| |||||||| |||||||    
T  11784267 taataatttgagaaaatcacatgaatcagtgtaattatatatgtcggtgtcat 11784215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 13360467 - 13360388
Alignment:
Q  63 cacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||| ||||| || ||| | || ||||| |||||||| ||| ||||| ||||||||||||| ||||||| |||||    
T  13360467 cacggacactggacacgatacgaacacagacacgtcgacaccactagtaatttgagaaaatcacataattcagtgtaatt 13360388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 26562688 - 26562758
Alignment:
Q  98 cgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtc 168  Q
    |||||| ||||| |||| ||||||||||||| ||||||| ||||| ||| ||||  |||| ||||||||||    
T  26562688 cgacactgctaaaaatttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtcggtgtc 26562758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 31579311 - 31579241
Alignment:
Q  72 cggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||||| |||| ||| |||| |||| | |||||| |||||||| ||||||||||||| ||||||| |||||    
T  31579311 cggacacgacatggacactgccacaccaacaccgttaataatttgagaaaatcacataattcagtgtaatt 31579241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 20371189 - 20371140
Alignment:
Q  79 gacacggatactgacacatcgacaccgctaataattcgagaaaatcacat 128  Q
    |||||||| | ||||||  ||||||||||||||||| |||||||||||||    
T  20371189 gacacggacattgacacgccgacaccgctaataatttgagaaaatcacat 20371140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 156
Target Start/End: Original strand, 17851377 - 17851488
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    ||||||||| |||||| |||||||||||||||| |||| |||||| |||||||||| |||||||||||||  |||||||||||| ||||||| ||||| |    
T  17851377 atgaagcacggatacagacacggacaccggacacgacatggataccgacacatcgataccgctaataattttagaaaatcacataattcagtgtaattat 17851476  T
Q  145 atatgtcagtgt 156  Q
    || |||| ||||    
T  17851477 atgtgtctgtgt 17851488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 598171 - 598235
Alignment:
Q  62 acacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcac 126  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||  ||||||||||    
T  598171 acacggacaccagacatgacacggacactgacacatcgacaccgctaataatttaagaaaatcac 598235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 32308109 - 32308197
Alignment:
Q  88 actgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacga 176  Q
    ||||||||  ||||||||||||||||| ||||||||||||| ||||||| ||||| ||| |||||||||| |||||||||  |||||||    
T  32308109 actgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattgtatgtgtcagtgtcgtgtcggtgttggacacga 32308197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 176
Target Start/End: Complemental strand, 26329495 - 26329364
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    |||||||||  ||||| |||||||||| ||||| ||||| || ||||||||  ||||| || |||||||| ||||||| ||||  ||||||| ||||| |    
T  26329495 atgaagcacgaatacagacacggacactggacacgacacagacactgacacgccgacatcgttaataatttgagaaaaacacacaattcagtgtaattat 26329396  T
Q  145 atatgtcagtgtcatgtcggtgtcagacacga 176  Q
    || |||| | ||| ||||||||||||||||||    
T  26329395 atgtgtcggcgtcgtgtcggtgtcagacacga 26329364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 171
Target Start/End: Original strand, 19206014 - 19206122
Alignment:
Q  63 cacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtc 162  Q
    |||||| ||| |||| |||||||| ||  ||||  ||||||||||||||||| ||||||||||||| ||||| ||||||| ||| |||| ||||| |||     
T  19206014 cacggataccagacacgacacggacaccaacacgccgacaccgctaataatttgagaaaatcacataattcattataattatatgtgtcggtgtcttgtt 19206113  T
Q  163 ggtgtcaga 171  Q
    |||||||||    
T  19206114 ggtgtcaga 19206122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 26733272 - 26733347
Alignment:
Q  67 gacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||||| |||| |||||||| |||||||| |||||||||||||||||| || |||||||||| ||||||| |||||    
T  26733272 gacaccagacacgacacggacactgacacgtcgacaccgctaataatttgacaaaatcacataattcagtctaatt 26733347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 27945006 - 27945084
Alignment:
Q  64 acggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||||||||||||| |||||||| ||||||||  ||||||| ||||||||| |||||||| |||| ||||||| |||||    
T  27945006 acggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaattacataattcagtgtaatt 27945084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 162
Target Start/End: Original strand, 5235932 - 5236049
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    |||||||||||||||| | |||||||  ||||| ||||| || |||||||| ||||||||||||||||||  ||||||| | || ||| ||| ||||| |    
T  5235932 atgaagcacagatacaaatacggacattggacacgacacagacactgacacgtcgacaccgctaataatttaagaaaattatataatttagtgtaattat 5236031  T
Q  145 atatgtcagtgtcatgtc 162  Q
    |||| || ||||| ||||    
T  5236032 atatatcggtgtcgtgtc 5236049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 11722193 - 11722121
Alignment:
Q  63 cacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcag 135  Q
    |||||| |||||||| |||||||| ||||||||  |||||||||||| |||| ||||||||||||| ||||||    
T  11722193 cacggataccggacacgacacggacactgacacgccgacaccgctaacaatttgagaaaatcacataattcag 11722121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 24339607 - 24339719
Alignment:
Q  64 acggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcg 163  Q
    |||||||||||||| |||| ||| | ||||||  |||||| |||||||||| || |||||||||| ||||||| |||||  |  |||| ||||| |||||    
T  24339607 acggacaccggacacgacatggacattgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcg 24339706  T
Q  164 gtgtcagacacga 176  Q
    ||||| |||||||    
T  24339707 gtgtcggacacga 24339719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 1433400 - 1433519
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    ||||||||| |||||   ||||||||||| ||| |||||||| | ||||||  |||||||| |||||||| ||||||||||||| |||  || ||||| |    
T  1433400 atgaagcacggatacgggcacggacaccgaacacgacacggacattgacacgccgacaccgttaataatttgagaaaatcacatcatttggtgtaattat 1433499  T
Q  145 atatgtcagtgtcatgtcgg 164  Q
    || |||| ||||| ||||||    
T  1433500 atgtgtcggtgtcgtgtcgg 1433519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 1885519 - 1885577
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacac 103  Q
    ||||||||| |||||| |||||||||||||||| ||||| ||||| |||||||||||||    
T  1885519 atgaagcacggatacagacacggacaccggacacgacactgatacggacacatcgacac 1885577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 20549780 - 20549849
Alignment:
Q  88 actgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtc 157  Q
    ||||||||| ||||||||||||||||| ||||||||||| | ||||||| ||||| ||| |||| |||||    
T  20549780 actgacacaccgacaccgctaataatttgagaaaatcacgtaattcagtgtaattatatgtgtcggtgtc 20549849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 21141097 - 21141004
Alignment:
Q  43 taatgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagt 136  Q
    ||||||||||| |||||  |||||||||||| ||| ||||||||  | ||||| |||||||| |||||||||  ||||||||| || |||||||    
T  21141097 taatgaagcacggatacggacacggacaccgtacacgacacggacgccgacacgtcgacaccactaataatttaagaaaatcatataattcagt 21141004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 30730983 - 30731080
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||||||||||||||  ||||||||||| |||| |||||  | | || |||  ||||||||| ||||||| ||||||||||||| ||||||| |||||    
T  30730983 atgaagcacagatacggacacggacaccagacacgacacatacagtggcacgccgacaccgcgaataatttgagaaaatcacataattcagtgtaatt 30731080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 43249957 - 43250036
Alignment:
Q  63 cacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||||||||| |||||||| ||||||||  |||||| | |||||||| |||||||| |||| || |||| |||||    
T  43249957 cacggacaccggacaagacacggacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaatt 43250036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 9778454 - 9778543
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||| |||||  |||||||||||||||| |||||||| |||||||||        ||| |||||| || |||||||||| |||||||||||||    
T  9778454 atgaagcacggatacggacacggacaccggacacgacacggacactgacaca--------gctgataatttgaaaaaatcacataattcagtataatt 9778543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 29787429 - 29787385
Alignment:
Q  98 cgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||||||||||| ||||||||||||| ||||||| |||||    
T  29787429 cgacaccgctaataatttgagaaaatcacataattcagtgtaatt 29787385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 36297436 - 36297369
Alignment:
Q  66 ggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattca 134  Q
    |||||||||||| |||||||| | |||||| ||||||| ||||||||||  |||||||||||| |||||    
T  36297436 ggacaccggacacgacacggacattgacac-tcgacacggctaataatttaagaaaatcacataattca 36297369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 9482917 - 9482992
Alignment:
Q  82 acggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtc 157  Q
    ||||| ||||||||| ||||| |||| |||||| ||||||||||||  ||||||| ||||| ||| |||| |||||    
T  9482917 acggacactgacacaccgacatcgctgataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtc 9482992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 22484005 - 22484084
Alignment:
Q  79 gacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtca 158  Q
    ||||| || ||||||||  |||||||||||||||||  |||||||  ||| ||||||||||||| ||| |||| ||||||    
T  22484005 gacacagacactgacacgccgacaccgctaataattttagaaaattgcataattcagtataattatatgtgtcggtgtca 22484084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 3721074 - 3721151
Alignment:
Q  79 gacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtc 157  Q
    |||||||| |||||||  ||||||  |||||||||| ||||||||||||| ||| ||||||||| ||| |||| |||||    
T  3721074 gacacggacactgacatttcgacat-gctaataatttgagaaaatcacataatttagtataattatatgtgtcggtgtc 3721151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 8842420 - 8842321
Alignment:
Q  73 ggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagac 172  Q
    ||||| |||||||| ||| | ||| |||||| ||||| |||| |||||||||||||||||| || ||    ||| |||||||||| |||||||||  |||    
T  8842420 ggacacgacacggacactaatacaccgacactgctaagaatttgagaaaatcacatgattctgtgta----tatgtgtcagtgtcttgtcggtgttggac 8842325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 21880100 - 21880195
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||||||||  ||||| ||||||||||||||||  ||||| | ||| |||  | |||| ||||||||||| |||||||| |||| ||||||| |||||    
T  21880100 atgaagcacgcatacagacacggacaccggaca--acacgaacactaacatgtggacatcgctaataatttgagaaaattacataattcagtgtaatt 21880195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 22868031 - 22868097
Alignment:
Q  88 actgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagt 154  Q
    ||||||||  ||||||| ||||||||  ||||||||||||| ||||||| ||||| ||| |||||||    
T  22868031 actgacacgccgacaccactaataatatgagaaaatcacataattcagtgtaattatatgtgtcagt 22868097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 24105651 - 24105721
Alignment:
Q  72 cggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||||| |||||||| ||||||||  |||||| |||||||||| || |||||  ||||||||||| |||||    
T  24105651 cggacacgacacggacactgacacgccgacacagctaataatttgaaaaaattgcatgattcagtgtaatt 24105721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 2425824 - 2425763
Alignment:
Q  67 gacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacat 128  Q
    ||||| ||||| ||||| |||||||||||  || ||||| |||||||| |||||||||||||    
T  2425824 gacactggacacgacacagatactgacacgccggcaccgttaataatttgagaaaatcacat 2425763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 31808600 - 31808544
Alignment:
Q  66 ggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaat 123  Q
    ||||||||||||||||||| | |||||||| ||| ||||| |||||||| ||||||||    
T  31808600 ggacaccggacatgacacgaacactgacacgtcg-caccgataataatttgagaaaat 31808544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 42720960 - 42720891
Alignment:
Q  88 actgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtc 157  Q
    |||||||| | |||||||||||||||| || |||||||||| ||| | | ||||| ||| ||||||||||    
T  42720960 actgacacgttgacaccgctaataatttgaaaaaatcacataattaaatgtaattatatgtgtcagtgtc 42720891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 49107795 - 49107844
Alignment:
Q  73 ggacatgacacggatactgacacatcgacaccgctaataattcgagaaaa 122  Q
    ||||| ||||||||  |||||||| ||||||||||||||||| |||||||    
T  49107795 ggacacgacacggactctgacacaccgacaccgctaataatttgagaaaa 49107844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 13557847 - 13557807
Alignment:
Q  55 gatacatacacggacaccggacatgacacggatactgacac 95  Q
    |||||| |||||||||||||||||||||| || ||||||||    
T  13557847 gatacagacacggacaccggacatgacacagacactgacac 13557807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 21828483 - 21828407
Alignment:
Q  80 acacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgt 156  Q
    ||||||| ||||||||  |||||||| || ||||| ||||||||||||| || || | ||||| ||| |||||||||    
T  21828483 acacggacactgacacgccgacaccgttagtaatttgagaaaatcacataatccattgtaattgtatgtgtcagtgt 21828407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 23191895 - 23191939
Alignment:
Q  98 cgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||||||||||| |||||||||||||  |||||| |||||    
T  23191895 cgacaccgctaataatttgagaaaatcacatatttcagtgtaatt 23191939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 51 - 176
Target Start/End: Complemental strand, 263479 - 263354
Alignment:
Q  51 cacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgt 150  Q
    |||||||||  |||||||||| ||| | |||||||| |||||||  || |||| |||||||||| ||||||| ||||| ||||||| ||||| ||  |||    
T  263479 cacagatacggacacggacactggatacgacacggacactgacatgtcaacactgctaataatttgagaaaaccacataattcagtgtaattataagtgt 263380  T
Q  151 cagtgtcatgtcggtgtcagacacga 176  Q
    ||||||| ||||||||||||||||||    
T  263379 cagtgtcgtgtcggtgtcagacacga 263354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 23293099 - 23293002
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||||||||||||||  |||||||||||||||| |||||||| | ||||||  |||||| |||||||||| || |||||||||| |||||||||||||    
T  23293099 atgaagcacagatacggacacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtataatt 23293002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 176
Target Start/End: Complemental strand, 30982990 - 30982860
Alignment:
Q  43 taatgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||||| |||||  ||| |||||||||| | |||||||| || |||||   | |||||||||| ||| |||||||||||||  |||||| |||||    
T  30982990 taatgaagcacggatacgaacatggacaccggatacgacacggacacagacac---gccaccgctaatgatttgagaaaatcacatatttcagtgtaatt 30982894  T
Q  143 ttatatgtcagtgtcatgtcggtgtcagacacga 176  Q
     ||  |||| ||||| ||||||||||||||||||    
T  30982893 ataagtgtcggtgtcgtgtcggtgtcagacacga 30982860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 903868 - 903999
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    ||||||||| |||||  |||||| | || ||||| | ||||| ||||||||| || ||||| |||||||| ||||||||||||| ||||||| ||||| |    
T  903868 atgaagcacggatacggacacgggcgccagacataaaacggacactgacacaccggcaccgttaataatttgagaaaatcacataattcagtgtaattat 903967  T
Q  145 atatgtcagtgtcatgtcggtgtcagacacga 176  Q
    || | ||||| || | |||||||  |||||||    
T  903968 atgtatcagtatcgtatcggtgttggacacga 903999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 179
Target Start/End: Original strand, 847898 - 848031
Alignment:
Q  46 tgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttta 145  Q
    |||||||| |||||  ||| |||| ||||||| ||||| || ||||||||  |||  |||||||||||| |||||||| |||| ||||| |||||||  |    
T  847898 tgaagcacggatacggacatggaccccggacacgacacagacactgacacgccgatgccgctaataatttgagaaaattacataattcactataattaca 847997  T
Q  146 tatgtcagtgtcatgtcggtgtcagacacgaaac 179  Q
      |||| ||||| ||| |||||| ||||||||||    
T  847998 agtgtcggtgtcttgttggtgtcggacacgaaac 848031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 142
Target Start/End: Original strand, 13783231 - 13783324
Alignment:
Q  49 agcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||| |||||| ||||||||| |  | |||||||||| ||||||||| ||||||||||||| ||| ||||| ||||||  ||||||| |||||    
T  13783231 agcacggatacagacacggacatctcaaatgacacggacactgacacaccgacaccgctaattatttgagaagatcacaaaattcagtgtaatt 13783324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 20633431 - 20633500
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataatt 114  Q
    ||||||||| |||||  ||||||||||| |||| || ||||| |||||||| ||||||||||||||||||    
T  20633431 atgaagcacggatacggacacggacaccagacacgatacggacactgacacgtcgacaccgctaataatt 20633500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 24343453 - 24343550
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||| || ||| |||||||||||||||| ||||||||  | |||||  |||||| | |||||||| |||||||| |||| ||||||| |||||    
T  24343453 atgaagcacggacacagacacggacaccggacacgacacggacgccgacacgccgacacggataataatttgagaaaattacataattcagtgtaatt 24343550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 176
Target Start/End: Complemental strand, 38148808 - 38148707
Alignment:
Q  75 acatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacac 174  Q
    ||||||| |||| | |||||  ||||||||||||||| || ||||||||||||| ||||||| |||||||| |||||  |||| ||| |||||  |||||    
T  38148808 acatgacgcggacaatgacatttcgacaccgctaatagtttgagaaaatcacataattcagtgtaattttaaatgtcgatgtcgtgttggtgttggacac 38148709  T
Q  175 ga 176  Q
    ||    
T  38148708 ga 38148707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 22440684 - 22440616
Alignment:
Q  74 gacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||| |||| ||| ||||| |||||||||||| |||||||| ||||||||||||| ||||||| |||||    
T  22440684 gacacgacatggacactgatacatcgacaccgttaataatttgagaaaatcacataattcagtgtaatt 22440616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 36635287 - 36635367
Alignment:
Q  62 acacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||| ||||||||||| ||| |||| ||||||||  | ||||| ||||||||| ||||||||||||| ||||||| |||||    
T  36635287 acacagacaccggacacgactcggacactgacacgccaacaccactaataatttgagaaaatcacataattcagtgtaatt 36635367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 8423778 - 8423719
Alignment:
Q  98 cgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtc 157  Q
    ||||||||||||||||| ||||||||||||| ||||||| ||||| || ||||| |||||    
T  8423778 cgacaccgctaataatttgagaaaatcacataattcagtgtaattataaatgtcggtgtc 8423719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 21945467 - 21945546
Alignment:
Q  63 cacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||||||||||||||| || |||||||   |||||| |||||||||| || ||||| |||| ||||||| |||||    
T  21945467 cacggacaccggacatgacacagacactgacatgccgacacagctaataatttgaaaaaatgacataattcagtgtaatt 21945546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 33950082 - 33950165
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacat 128  Q
    ||||||||| | |||  ||||||||||| ||||| ||||| | |||||||| || || |||||||||||| |||||||||||||    
T  33950082 atgaagcacgggtacgaacacggacaccagacataacacgaacactgacacttcaacgccgctaataatttgagaaaatcacat 33950165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 176
Target Start/End: Original strand, 4383351 - 4383444
Alignment:
Q  82 acggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacga 176  Q
    ||||| |||||||| |||| ||  ||||||||| || |||||||||| ||||||| |||||  | ||||||||||| ||||||||||| ||||||    
T  4383351 acggacactgacacgtcgatacaactaataatttga-aaaatcacataattcagtgtaattacaaatgtcagtgtcgtgtcggtgtcaaacacga 4383444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 163
Target Start/End: Complemental strand, 5775452 - 5775353
Alignment:
Q  66 ggacaccggacatgacacgga---tactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtc 162  Q
    |||||| ||||| ||||||||   |||||||||| |||||||  |||||||| ||||||||||||| ||| ||| ||||| ||| |||| ||||||||||    
T  5775452 ggacacaggacacgacacggacactactgacaca-cgacaccattaataatttgagaaaatcacataattaagtgtaattatatgtgtcggtgtcatgtc 5775354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 24613768 - 24613683
Alignment:
Q  91 gacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacga 176  Q
    ||||| |||||||  ||||||||| ||||||||||||| ||||| | ||| |  |  |||| ||||||||||||||||||||||||    
T  24613768 gacacgtcgacacaactaataatttgagaaaatcacataattcaatgtaagtacaagtgtcggtgtcatgtcggtgtcagacacga 24613683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 35723455 - 35723374
Alignment:
Q  88 actgacacatcgacaccgctaataattcgagaaaat-cacatgattcagtataattttatatgtcagtgtcatgtcggtgtc 168  Q
    ||||||||  ||||||||||||||||| |||||||| ||||| ||||| | ||||| ||| |||||||||| | ||||||||    
T  35723455 actgacacgccgacaccgctaataatttgagaaaatacacataattcaatgtaattatatgtgtcagtgtcgtatcggtgtc 35723374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 21658872 - 21658797
Alignment:
Q  100 acaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacg 175  Q
    ||||| ||||||||| ||||||||||||| ||| | ||||||||||  |||| || ||||||| ||||| ||||||    
T  21658872 acaccactaataatttgagaaaatcacataatttactataattttaagtgtcggtttcatgtcagtgtcggacacg 21658797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 40179727 - 40179652
Alignment:
Q  67 gacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||| |||||||||||| |||||||| | ||||||  ||||| || || |||||||||| ||||||| |||||    
T  40179727 gacaccgaacatgacacggacactgacacgttgacaccattaatagtttgaaaaaatcacataattcagtgtaatt 40179652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 23861500 - 23861439
Alignment:
Q  89 ctgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgt 150  Q
    |||| ||| ||||||||||||||| | || |||||||||||||||| | ||||| |||||||    
T  23861500 ctgaaacaccgacaccgctaataaattgataaaatcacatgattcaatgtaattatatatgt 23861439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 40613449 - 40613502
Alignment:
Q  98 cgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtc 151  Q
    |||||||||||||| || ||||||||||||| ||||||| ||||| ||| ||||    
T  40613449 cgacaccgctaatattttgagaaaatcacataattcagtgtaattatatgtgtc 40613502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 1747211 - 1747255
Alignment:
Q  98 cgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||||||||| | ||||||||||||| ||||||| |||||    
T  1747211 cgacaccgctaataaattgagaaaatcacataattcagtttaatt 1747255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 38503266 - 38503386
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    |||| |||| |||||  |||||||||| |||||||||||||| ||| ||||| ||||||||||||||||| |||||||||| ||  |||||| ||||| |    
T  38503266 atgatgcacggatacggacacggacacgggacatgacacggacactaacacaccgacaccgctaataatttgagaaaatcatatatttcagtgtaattat 38503365  T
Q  145 atatgtcagtgtcatgtcggt 165  Q
    || |||| ||||| |||||||    
T  38503366 atgtgtcggtgtcctgtcggt 38503386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 398878 - 398781
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||| |||||  || ||||||||||||| |||||||| ||||||||  ||||||||||||||||| || |||||||||| ||||||| |||||    
T  398878 atgaagcacggatacggacgcggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaatt 398781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 34298382 - 34298479
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||| ||| |||||| ||||| ||||| |||| |||||||| ||||||||| ||||||| ||||||||| ||||||||||||| ||||||| |||||    
T  34298382 atgaaacaccgatacagacacgtacaccagacacgacacggaaactgacacaccgacaccactaataatttgagaaaatcacataattcagtgtaatt 34298479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 20157441 - 20157346
Alignment:
Q  67 gacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtc 162  Q
    ||||||||||| |||||||  ||||||||||||||||||||||||||  ||||||||||||| ||||||| ||||  ||| |||| ||||| ||||    
T  20157441 gacaccggacacgacacgggcactgacacatcgacaccgctaataatgtgagaaaatcacataattcagtgtaatcatatgtgtcggtgtcgtgtc 20157346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 2896234 - 2896121
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    |||||| || ||||||  |||||||| ||||||  ||||||| ||||||||  ||||||||||||||||| ||||||||||||| ||||||| ||  | |    
T  2896234 atgaagaacggatacagtcacggacaacggacacaacacggacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtagctat 2896135  T
Q  145 atatgtcagtgtca 158  Q
    ||||||| ||||||    
T  2896134 atatgtcggtgtca 2896121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 9828043 - 9828121
Alignment:
Q  98 cgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacga 176  Q
    ||||||| ||||||||| || |||||||||| ||||||| ||||||||| |||| ||||| |||| |||||||||||||    
T  9828043 cgacaccactaataatttgataaaatcacataattcagtgtaattttatgtgtcggtgtcgtgtccgtgtcagacacga 9828121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 15641126 - 15641052
Alignment:
Q  62 acacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagt 136  Q
    ||||||||| ||||||||||||||| |||||||   |||||| ||||||||||  ||||||||||||||||||||    
T  15641126 acacggacatcggacatgacacggacactgacatgccgacactgctaataatttaagaaaatcacatgattcagt 15641052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 25361885 - 25361963
Alignment:
Q  98 cgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacga 176  Q
    ||||||| || |||||| ||||||||||||| ||||||| ||||| ||| |||||||||| |||||||||| |||||||    
T  25361885 cgacaccactgataatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtcggacacga 25361963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 7918324 - 7918207
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    ||||||||| | |||| ||| |||||||||||| ||||| || | ||||||   |||| | ||||||||| ||||||||||||| ||||||| ||||| |    
T  7918324 atgaagcacggttacagacatggacaccggacacgacacagacaatgacacgctgacatcactaataatttgagaaaatcacataattcagtgtaattat 7918225  T
Q  145 atatgtcagtgtcatgtc 162  Q
    || |||||||||| ||||    
T  7918224 atgtgtcagtgtcgtgtc 7918207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 79 - 176
Target Start/End: Complemental strand, 16252965 - 16252868
Alignment:
Q  79 gacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacga 176  Q
    |||||||||||||| ||||| |||||| ||||||||| ||||||| | |||||||||| ||||| ||| |||  |||| | |||||||| ||||||||    
T  16252965 gacacggatactgatacatcaacaccgttaataattcaagaaaatgatatgattcagtgtaattatatgtgttcgtgttaggtcggtgttagacacga 16252868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 40917714 - 40917779
Alignment:
Q  62 acacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcaca 127  Q
    |||||||||||||||| |||||||||||||||||  |||||| |||||||||| || |||||||||    
T  40917714 acacggacaccggacacgacacggatactgacacgccgacacagctaataatttgaaaaaatcaca 40917779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 1486822 - 1486703
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    ||||||||  |||||  ||||||| |||||| | |||||||||||||||||   ||||| |||||||||| || |||||||||| ||||||| ||||| |    
T  1486822 atgaagcatggatacggacacggataccggatacgacacggatactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaattat 1486723  T
Q  145 atatgtcagtgtcatgtcgg 164  Q
    |  |||| ||||| ||||||    
T  1486722 aagtgtcggtgtcgtgtcgg 1486703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 37055968 - 37055872
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||| |||||| ||||| ||| |||||||||||| || ||||| ||||||| || |||||||||| |||||||| |||| ||| ||| |||||    
T  37055968 atgaagcacggataca-acacgaacatcggacatgacacagacactgatacatcgatactgctaataatttgagaaaattacataatttagtgtaatt 37055872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 44482234 - 44482307
Alignment:
Q  103 ccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacga 176  Q
    ||||| |||||| ||||||||||||| ||||||| ||||| ||| |||| ||||| |||||||||| |||||||    
T  44482234 ccgcttataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacga 44482307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 167
Target Start/End: Original strand, 17754263 - 17754379
Alignment:
Q  51 cacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgt 150  Q
    |||||||||| ||| | |||||| | | ||||| ||  |||||||| ||||||||||||||||| || ||||| |||| ||||||| ||| | ||| |||    
T  17754263 cacagatacaaacatgaacaccgtatacgacacagacgctgacacaccgacaccgctaataatttgaaaaaattacataattcagtgtaactatatgtgt 17754362  T
Q  151 cagtgtcatgtcggtgt 167  Q
    ||||||  |||||||||    
T  17754363 cagtgtggtgtcggtgt 17754379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 176
Target Start/End: Complemental strand, 6612284 - 6612153
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    |||||||||||||||  ||||| |||||||||| |||||||| | ||||||  ||| || | |||||||| || ||||| |||| ||||||| |||||      
T  6612284 atgaagcacagatacggacacgaacaccggacacgacacggacaatgacacgccgatacagttaataatttgaaaaaattacataattcagtgtaattac 6612185  T
Q  145 atatgtcagtgtcatgtcggtgtcagacacga 176  Q
    |  |||| ||||| ||||| |||| |||||||    
T  6612184 aagtgtcggtgtcgtgtcgatgtcggacacga 6612153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 9709767 - 9709854
Alignment:
Q  46 tgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattc 133  Q
    |||||||| |||||| ||| ||||| | |||| |||||||| |||||||   | ||||||||||||||| ||||||||||||| ||||    
T  9709767 tgaagcacggatacagacatggacatcagacacgacacggacactgacatgcctacaccgctaataatttgagaaaatcacataattc 9709854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 10572683 - 10572572
Alignment:
Q  64 acggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcg 163  Q
    |||||||||||||| |||| | | ||||||||  ||||||| ||||||||| ||||||||||||| |||| || |||||  || |||| ||||  ||| |    
T  10572683 acggacaccggacacgacatgaacactgacacgccgacaccactaataatttgagaaaatcacataattcggtgtaattaaatgtgtcggtgttgtgttg 10572584  T
Q  164 gtgtcagacacg 175  Q
    ||||||| ||||    
T  10572583 gtgtcaggcacg 10572572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 1262849 - 1262927
Alignment:
Q  64 acggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||| |||||||| |||||| | || |||||  |||||| |||||||||| ||||||||||||| ||||| |||||||    
T  1262849 acggataccggacacgacacgaacacggacacgccgacacagctaataatttgagaaaatcacataattcaatataatt 1262927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 36878450 - 36878504
Alignment:
Q  88 actgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||  ||||||||||||||||| ||||||||||||| ||||||| |||||    
T  36878450 actgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaatt 36878504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 9629967 - 9629882
Alignment:
Q  91 gacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacga 176  Q
    |||||||||||||||||||||||| || ||||||| || ||||||| | ||| ||  |||| ||||| ||||| |||| |||||||    
T  9629967 gacacatcgacaccgctaataatttgataaaatcatataattcagtgtgattataagtgtcggtgtcgtgtcgatgtcggacacga 9629882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 12443537 - 12443476
Alignment:
Q  81 cacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||| |||||  |||||| |||||||||| ||||||||||||| ||||||| |||||    
T  12443537 cacggatacggacacgccgacacagctaataatttgagaaaatcacataattcagtgtaatt 12443476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 16297396 - 16297299
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||| |||||  ||| ||||| |||||| || |||||||||||||| ||||||| || ||||||  || |||||||||  ||||||| |||||    
T  16297396 atgaagcacggatacggacatggacatcggacacgatacggatactgacacgtcgacacagcaaataatatgaaaaaatcacaaaattcagtgtaatt 16297299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 16812519 - 16812580
Alignment:
Q  75 acatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagt 136  Q
    |||||||||||| ||||||||| |||||||  |||||||| || |||||||||| |||||||    
T  16812519 acatgacacggacactgacacaccgacaccaataataatttgacaaaatcacataattcagt 16812580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 17831601 - 17831548
Alignment:
Q  88 actgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataat 141  Q
    ||||||||  ||||||||||||||||| ||||||||||||| ||||||| ||||    
T  17831601 actgacacgccgacaccgctaataatttgagaaaatcacattattcagtgtaat 17831548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 34371714 - 34371782
Alignment:
Q  99 gacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtc 168  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||| ||| |||| ||||| ||| ||||||    
T  34371714 gacaccgctaataatt-gagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgttggtgtc 34371782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 5376587 - 5376483
Alignment:
Q  71 ccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcag 170  Q
    ||||||| |||||||| ||| ||||  |||||||||||||||||  ||||||| |||| ||||||| |||||  |  |||| ||||| ||||| |||| |    
T  5376587 ccggacacgacacggacactaacacgccgacaccgctaataatttaagaaaataacataattcagtgtaattaaaagtgtcggtgtcgtgtcgatgtcgg 5376488  T
Q  171 acacg 175  Q
    |||||    
T  5376487 acacg 5376483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 27471636 - 27471557
Alignment:
Q  88 actgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgt 167  Q
    ||||||||| ||| ||||||||||||| ||||||| ||||| ||||||| |||||  || |||  ||||||| |||||||    
T  27471636 actgacacaccgataccgctaataatttgagaaaagcacataattcagtgtaattacatgtgttggtgtcatatcggtgt 27471557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 36905970 - 36906033
Alignment:
Q  72 cggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcag 135  Q
    |||||||| || ||| ||||||||| | ||||||||||||||  ||||||||||||| ||||||    
T  36905970 cggacatgtcaaggacactgacacaccaacaccgctaataatctgagaaaatcacataattcag 36906033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 5898352 - 5898282
Alignment:
Q  72 cggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||||||||||| || ||||| ||  ||||||||||||||||  || |||||||||| ||||||| |||||    
T  5898352 cggacatgacacagacactgagacgccgacaccgctaataatctgaaaaaatcacataattcagtgtaatt 5898282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 6427323 - 6427385
Alignment:
Q  72 cggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattca 134  Q
    |||||| | |||||| ||||||||  | ||||||||||||||| ||||||||||||| |||||    
T  6427323 cggacacggcacggacactgacacgccaacaccgctaataatttgagaaaatcacataattca 6427385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 10577848 - 10577766
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcaca 127  Q
    ||||||||| |||||  |||||||||||||||| |||||||| || |||||  |||||| ||||||  ||  |||||||||||    
T  10577848 atgaagcacggatacggacacggacaccggacacgacacggacaccgacacgccgacacagctaatttttttagaaaatcaca 10577766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 13011329 - 13011231
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcg-agaaaatcacatgattcagtataatt 142  Q
    |||||| ||||||||| |||||||||||| ||| |||||| | |||||||   |||||| |||||||||| | | |||||||||| ||| ||| |||||    
T  13011329 atgaagaacagatacagacacggacaccgaacacgacacgaacactgacatgccgacacagctaataatttgaaaaaaatcacataattaagtgtaatt 13011231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 21038086 - 21038160
Alignment:
Q  102 accgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacga 176  Q
    |||||||||||||  ||||||| |||| ||||||| ||||  |||  ||||||||| |||||||||| |||||||    
T  21038086 accgctaataatttaagaaaattacataattcagtgtaatcatatgcgtcagtgtcgtgtcggtgtcggacacga 21038160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 28674801 - 28674851
Alignment:
Q  100 acaccgctaataattcgagaaaatcacatgattcagtataattttatatgt 150  Q
    |||||| |||||||| |||||||| |||| ||||||||||||| |||||||    
T  28674801 acaccgttaataatttgagaaaattacataattcagtataattatatatgt 28674851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 40181855 - 40181914
Alignment:
Q  81 cacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||| ||||||  ||||| |||||||||| ||||||||||||| ||||||| |||||    
T  40181855 cacggatacggacaca--gacactgctaataatttgagaaaatcacataattcagtgtaatt 40181914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 2851002 - 2851058
Alignment:
Q  79 gacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagt 136  Q
    ||||||||||||||||| || ||||||||||||||| || ||||| |||| |||||||    
T  2851002 gacacggatactgacacgtc-acaccgctaataatttgataaaattacataattcagt 2851058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 176
Target Start/End: Complemental strand, 6415080 - 6414984
Alignment:
Q  79 gacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacga 176  Q
    |||||||| ||||||||  ||||| ||||||| ||| ||||||||||||| || |||| |||||  || |||| ||||||| ||| |||| |||||||    
T  6415080 gacacggacactgacacgccgacatcgctaattatttgagaaaatcacataatacagtttaattagatgtgtcggtgtcat-tcgatgtcggacacga 6414984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 174
Target Start/End: Complemental strand, 31694823 - 31694694
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaa--tcacatgattcagtataatt 142  Q
    ||||||||| |||||  | |||||||||||||| ||||  || ||||| || ||||||  |||||||||| || ||||  |||||| |||||||||||||    
T  31694823 atgaagcacggatacggatacggacaccggacacgaca--gacactgatacgtcgacatagctaataatttgaaaaaaaatcacataattcagtataatt 31694726  T
Q  143 ttatatgtcagtgtcatgtcggtgtcagacac 174  Q
      |  |||| ||||| |||||||||| |||||    
T  31694725 acaagtgtcggtgtcgtgtcggtgtcggacac 31694694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 15323126 - 15323206
Alignment:
Q  62 acacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||||||||||||||| |||| ||| |||||||  |||| || | |||||||| || |||||||||| ||| ||| |||||    
T  15323126 acacggacaccggacacgacatggacactgacatgtcgatacagttaataatttgaaaaaatcacataatttagtgtaatt 15323206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 18471244 - 18471343
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcg--agaaaatcacatgattcagtataatt 142  Q
    ||||||||||||||   ||||||| | |||| | |||||||| | |||| | ||||||| |||||||||| |  | |||||||||| |||||||||||||    
T  18471244 atgaagcacagatatggacacggatatcggatacgacacggacaatgacccgtcgacacagctaataatttgaaaaaaaatcacataattcagtataatt 18471343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 25098615 - 25098571
Alignment:
Q  98 cgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||||||||| |||||| ||||||||||||| ||||||| |||||    
T  25098615 cgacaccgctgataatttgagaaaatcacataattcagtgtaatt 25098571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 31015006 - 31015086
Alignment:
Q  62 acacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||| |||||||| || |||||||  |||||| |  | |||| |||||||||| ||||||||||||| ||||||| |||||    
T  31015006 acacagacaccgggcacgacacgggcactgacgcgcctacacagctaataatttgagaaaatcacataattcagtgtaatt 31015086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 40285724 - 40285676
Alignment:
Q  88 actgacacatcgacaccgctaataattcgagaaaatcacatgattcagt 136  Q
    ||||||||| | ||||||||||||||| ||||||||| ||| |||||||    
T  40285724 actgacacaccaacaccgctaataatttgagaaaatcgcataattcagt 40285676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 24362315 - 24362192
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    |||||||||||||||  | |||||||||||| | ||||| || || |||||  ||||||||||||||||| |||| |||||||| ||||||| ||||| |    
T  24362315 atgaagcacagatacggatacggacaccggatacgacacagacaccgacacgccgacaccgctaataatttgagagaatcacataattcagtgtaattat 24362216  T
Q  145 atatgtcagtgtcatgtcggtgtc 168  Q
    || ||||| |||| ||||||||||    
T  24362215 atgtgtcaatgtcgtgtcggtgtc 24362192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 22651922 - 22652053
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    |||||| || |||||  |||| ||||||||||| |||||||| ||||||||  |||||| |||||||||| || |||||||||| ||||| |||||||      
T  22651922 atgaagtacggatacggacactgacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcaatataattac 22652021  T
Q  145 atatgtcagtgtcatgtcggtgtcagacacga 176  Q
    |  |||| ||||| |||||||||| |||||||    
T  22652022 aagtgtcggtgtcgtgtcggtgtcggacacga 22652053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 176
Target Start/End: Complemental strand, 29510417 - 29510286
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    ||||||||| |||||  ||| |||||||||||| |||||||| ||||||||  |||||| |||||||||| || |||||||||  |||||||||||||      
T  29510417 atgaagcacggatactgacatggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacaaaattcagtataattac 29510318  T
Q  145 atatgtcagtgtcatgtcggtgtcagacacga 176  Q
    |  |||| ||||  |||||||||| |||||||    
T  29510317 aagtgtcggtgtagtgtcggtgtcggacacga 29510286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 37283923 - 37283826
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||| ||||| |||| ||||||| ||||||||||||| |||||||    | |||||||||||||  ||||||||||||| ||||||| |||||    
T  37283923 atgaagcacggatacgtacatggacaccagacatgacacggacactgacatgcgggcaccgctaataatctgagaaaatcacataattcagtgtaatt 37283826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 176
Target Start/End: Complemental strand, 2572169 - 2572038
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    ||||||||  |||||  |||||||||| ||||| ||||||||||| ||||| |||||||  ||||||||| || |||||||||| ||| ||| |||||      
T  2572169 atgaagcatggatacggacacggacactggacacgacacggataccgacacgtcgacacacctaataatttgaaaaaatcacataatttagtgtaattac 2572070  T
Q  145 atatgtcagtgtcatgtcggtgtcagacacga 176  Q
    |  |||| ||||| |||| ||||| |||||||    
T  2572069 aagtgtcggtgtcgtgtctgtgtcggacacga 2572038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 926901 - 926804
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||| |||||  |||||||||||||||| |||||||| ||||||||  | ||||  ||||||||| ||||||||| |||  |||||| |||||    
T  926901 atgaagcacggatacgaacacggacaccggacacgacacggacactgacacgccaacactcctaataatttgagaaaatctcattgttcagtgtaatt 926804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 28385090 - 28384977
Alignment:
Q  62 acacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgt 161  Q
    ||||||| || | ||| |||||||| ||||||| | |||||||| |||||||  ||  ||||| ||| ||||||| ||||| ||| |||| |||||||||    
T  28385090 acacggatactgaacacgacacggacactgacataccgacaccgttaataatatgaataaatctcataattcagtgtaattatatgtgtcggtgtcatgt 28384991  T
Q  162 cggtgtcagacacg 175  Q
    | ||||||||||||    
T  28384990 cagtgtcagacacg 28384977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 34897068 - 34897137
Alignment:
Q  82 acggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtc 151  Q
    ||||| || ||||| |||||||||||||||||| ||||||||||||| ||||||| ||||| ||| ||||    
T  34897068 acggacacagacacgtcgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtc 34897137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 13437056 - 13436988
Alignment:
Q  66 ggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattca 134  Q
    ||||||||||||||||| ||| ||||||||  |||||| |||||||||| || |||||||||| |||||    
T  13437056 ggacaccggacatgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattca 13436988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 36934650 - 36934705
Alignment:
Q  79 gacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattca 134  Q
    |||||||| ||| |||| ||||||||||||||||||||| |||||||||| |||||    
T  36934650 gacacggacactaacacgtcgacaccgctaataattcgaaaaaatcacataattca 36934705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 27213518 - 27213599
Alignment:
Q  70 accggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtc 151  Q
    |||||||| ||||||||||| |||||  |||||| ||||||||||  |||||||||||| ||||| | ||||| ||| ||||    
T  27213518 accggacacgacacggatacagacacgccgacactgctaataatttcagaaaatcacataattcactgtaattatatgtgtc 27213599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 14134706 - 14134758
Alignment:
Q  106 ctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtca 158  Q
    ||||||||| ||||||||||||| ||||||| ||||| |||||||| ||||||    
T  14134706 ctaataatttgagaaaatcacataattcagtgtaattatatatgtcggtgtca 14134758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 29776016 - 29776109
Alignment:
Q  79 gacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacac 174  Q
    |||||||| | |||||  ||||||| |||||||||| ||||||||||| | |||||||||||  ||||||||| |||| | ||| ||||| |||||    
T  29776016 gacacggacattgacaagtcgacactgctaataatttgagaaaatcacgtaattcagtataa--ttatatgtcggtgttaagtcagtgtcggacac 29776109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 43737926 - 43737875
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacaca 96  Q
    ||||||||| |||||| |||||||||||||||| |||||||| || ||||||    
T  43737926 atgaagcacggatacagacacggacaccggacacgacacggacaccgacaca 43737875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 142
Target Start/End: Complemental strand, 25192441 - 25192363
Alignment:
Q  64 acggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||| |||||| || ||||| ||||||||  |||||| |||||||||| || ||| | |||| |||||||||||||    
T  25192441 acggacatcggacacgatacggacactgacacgccgacacagctaataatttgaaaaagtgacataattcagtataatt 25192363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 31556962 - 31557039
Alignment:
Q  64 acggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||||||||||||| ||  ||||||||  |||||| | |||||||| || |||||||||| ||||||| |||||    
T  31556962 acggacaccggacatgacatggtcactgacacgccgacacagttaataatttga-aaaatcacataattcagtgtaatt 31557039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 4611528 - 4611577
Alignment:
Q  93 cacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||| ||||||||||||||||| |||||||| |||| ||||||| |||||    
T  4611528 cacaccgacaccgctaataatttgagaaaataacataattcagtgtaatt 4611577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 18067993 - 18067956
Alignment:
Q  99 gacaccgctaataattcgagaaaatcacatgattcagt 136  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  18067993 gacaccgctaataatttgagaaaatcacataattcagt 18067956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 24413673 - 24413604
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataatt 114  Q
    ||||||||| |||||  ||||||||||| |||| |||||||| ||||||| |  ||||||| ||||||||    
T  24413673 atgaagcacggatacggacacggacaccagacacgacacggacactgacatactgacaccgttaataatt 24413604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 29447177 - 29447092
Alignment:
Q  91 gacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacga 176  Q
    ||||| |||||||  ||||||||| ||||||||||||| ||||| | ||| |  |  |||| |||||||||||||||| |||||||    
T  29447177 gacacgtcgacacaactaataatttgagaaaatcacataattcaatgtaactacaagtgtcggtgtcatgtcggtgtcggacacga 29447092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 44067462 - 44067559
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||| || ||| ||||||||||| ||||  |||| || ||||||||  |||||| | |||||||| |||||||| |||| || |||| |||||    
T  44067462 atgaagcacggacacagacacggacaccagacaccacaccgacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaatt 44067559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 3025557 - 3025609
Alignment:
Q  105 gctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtc 157  Q
    |||||||||| ||||||||||||| ||||||| ||||| ||  ||||||||||    
T  3025557 gctaataatttgagaaaatcacataattcagtgtaattataggtgtcagtgtc 3025609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 31236656 - 31236584
Alignment:
Q  79 gacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtc 151  Q
    |||| |||||| |||||  |||||| |||||||||| ||||||||||||| ||||| | ||||| ||| ||||    
T  31236656 gacaaggatacggacacgccgacactgctaataatttgagaaaatcacataattcaatgtaattatatgtgtc 31236584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 39954339 - 39954295
Alignment:
Q  98 cgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||||||||||| ||||||||||||| ||| ||| |||||    
T  39954339 cgacaccgctaataatttgagaaaatcacataatttagtgtaatt 39954295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 12927606 - 12927713
Alignment:
Q  51 cacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgt 150  Q
    |||||||| |||||| ||||| |||||||| || || || |||||| ||||| ||||||||||| |||||||||| || ||| ||| ||||| |||||||    
T  12927606 cacagatatatacacagacactggacatgatacagacacggacacaccgacatcgctaataatttgagaaaatcatataatttagtgtaattatatatgt 12927705  T
Q  151 cagtgtca 158  Q
    ||||||||    
T  12927706 cagtgtca 12927713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 66 - 168
Target Start/End: Complemental strand, 22423904 - 22423802
Alignment:
Q  66 ggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggt 165  Q
    ||||| || ||| |||||||||||||||||   |||||  ||||||||| ||||||||||||| ||||| ||||||| |||||||| ||||| |||||||    
T  22423904 ggacatcgaacacgacacggatactgacaccctgacactactaataatttgagaaaatcacataattcaatataattatatatgtcggtgtcgtgtcggt 22423805  T
Q  166 gtc 168  Q
    |||    
T  22423804 gtc 22423802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 19820488 - 19820427
Alignment:
Q  64 acggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatca 125  Q
    |||||||||||||| |||||||| ||||||||  ||||||||||||||||| ||||||||||    
T  19820488 acggacaccggacacgacacggacactgacactccgacaccgctaataatttgagaaaatca 19820427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 12264887 - 12264811
Alignment:
Q  100 acaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacga 176  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||| ||| ||||| |||||| ||||||||||| ||||    
T  12264887 acaccgctaattatttgagaaaattacatgattcagtgtaattatatgtgtcaatgtcatatcggtgtcagatacga 12264811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 13287509 - 13287421
Alignment:
Q  48 aagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagt 136  Q
    |||||| |||||  |||||||||||||||| |||||||| ||| |||| ||||||| | |||||||| || |||||||||| |||||||    
T  13287509 aagcacggatacggacacggacaccggacacgacacggacactaacacgtcgacacagataataatttgaaaaaatcacataattcagt 13287421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 22299572 - 22299497
Alignment:
Q  66 ggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||||||||| | |||||||||| ||||||| |||||| ||||||||||  | ||||||||||||||||||||||||    
T  22299572 ggacaccggatacgacacggatattgacacaccgacacagctaataatttaa-aaaatcacatgattcagtataatt 22299497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 136
Target Start/End: Original strand, 6770489 - 6770580
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagt 136  Q
    ||||||||| |||||  | |||||||||| |||||||||||| |||||||||  |||||  |||||||||  |||||||||||| |||||||    
T  6770489 atgaagcacggatacggatacggacaccgaacatgacacggacactgacacactgacacaactaataatttaagaaaatcacataattcagt 6770580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 156
Target Start/End: Original strand, 17122995 - 17123105
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    ||||||||||||||   ||||||||| ||||||| ||| ||| ||||||||  | ||||||||||||||| ||||||||||||| ||  |||| |||| |    
T  17122995 atgaagcacagatagg-acacggacatcggacataacatggacactgacacgccaacaccgctaataatttgagaaaatcacataatcaagtacaattat 17123093  T
Q  145 atatgtcagtgt 156  Q
    ||||||| ||||    
T  17123094 atatgtcggtgt 17123105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 7175098 - 7175024
Alignment:
Q  79 gacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcag 153  Q
    |||||||| |||||||||||||||||| |||||||| ||||||||||||| |||  | |||||| ||| ||||||    
T  7175098 gacacggacactgacacatcgacaccgttaataatttgagaaaatcacataatttggcataattatatgtgtcag 7175024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 25817495 - 25817569
Alignment:
Q  99 gacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagaca 173  Q
    ||||| ||||||||||  | ||||||| |||||||||||| ||| ||| ||||||| ||||||||||||||||||    
T  25817495 gacactgctaataatttaaaaaaatcatatgattcagtatgattatatgtgtcagtatcatgtcggtgtcagaca 25817569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 176
Target Start/End: Complemental strand, 37328940 - 37328826
Alignment:
Q  62 acacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgt 161  Q
    |||||||||||| ||| |||||||| ||||| ||| |||||| || ||||||| |  |||||||||  ||||||| |||||  || |||| ||||| |||    
T  37328940 acacggacaccgaacacgacacggacactgatacaccgacacagcaaataatttgtaaaaatcacaaaattcagtgtaattacatgtgtcggtgtcgtgt 37328841  T
Q  162 cggtgtcagacacga 176  Q
    ||||||| |||||||    
T  37328840 cggtgtcggacacga 37328826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 3966502 - 3966578
Alignment:
Q  98 cgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacac 174  Q
    ||||||||||||||||| ||||||||||||  ||||||| ||||| ||| |||| ||||| |||| ||||| |||||    
T  3966502 cgacaccgctaataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcgtgtcagtgtcggacac 3966578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 15382423 - 15382522
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcg--agaaaatcacatgattcagtataatt 142  Q
    ||||||||| |||||  |||||||||||||||| |||||||| | ||||||  |||||| |||||||||| |  | ||||||| || |||||||||||||    
T  15382423 atgaagcacggatacggacacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaaaatcatataattcagtataatt 15382522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 19438332 - 19438388
Alignment:
Q  88 actgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    ||||||||||||||| |||| |||||| ||||||||||||| ||||||| |||||||    
T  19438332 actgacacatcgacatcgctgataatttgagaaaatcacataattcagtgtaatttt 19438388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 21191152 - 21191072
Alignment:
Q  62 acacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||| ||||||||||| |||||||| |||||||   |||||| |||||||||| || |||||||||| ||||||| |||||    
T  21191152 acactgacaccggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatcacataattcagtgtaatt 21191072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 26205873 - 26205777
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataat 141  Q
    ||||||||  || ||| ||||||||||||||||||||| ||| |||||||| |||| |||| ||| | || |||||||| |||| ||||||| ||||    
T  26205873 atgaagcatggacacagacacggacaccggacatgacatggacactgacacgtcgataccgataaaattttgagaaaatgacataattcagtgtaat 26205777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 16203899 - 16203796
Alignment:
Q  54 agatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcag 153  Q
    ||||||| |||| ||||||| |||||||||||| ||| |||   |||||| |||||||||| ||||||||| ||| ||| ||| ||||| ||| |||| |    
T  16203899 agatacagacacagacaccgaacatgacacggacactaacatgccgacactgctaataatttgagaaaatctcataatttagtgtaattatatgtgtcgg 16203800  T
Q  154 tgtc 157  Q
    ||||    
T  16203799 tgtc 16203796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 19579647 - 19579730
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacat 128  Q
    ||||||||| ||||| ||||| ||||||||| |  ||||||| ||||| ||  |||||| |||||||||| |||||||||||||    
T  19579647 atgaagcacggatacgtacaccgacaccggatacaacacggacactgatacgccgacacagctaataatttgagaaaatcacat 19579730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 134
Target Start/End: Original strand, 41995416 - 41995506
Alignment:
Q  44 aatgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattca 134  Q
    |||||||||| |||||  |||||||||| ||| | ||||| || ||||||||  ||||||  |||||||||||| |||||||||| |||||    
T  41995416 aatgaagcacggatacggacacggacactggatacgacacagacactgacacgccgacacaactaataattcgaaaaaatcacataattca 41995506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 41558779 - 41558707
Alignment:
Q  62 acacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattca 134  Q
    |||||||||||||| | |||||||| |||||||||| |||||   |||||||| |||||||| |||| |||||    
T  41558779 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacataattca 41558707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 6035472 - 6035558
Alignment:
Q  88 actgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacg 175  Q
    ||||||||  ||||||||||||||||| ||| |||| | || ||||||| ||||| ||| |||| ||||| |||||||| ||||||||    
T  6035472 actgacacgccgacaccgctaataatttgag-aaataatataattcagtgtaattatatttgtcggtgtcgtgtcggtgacagacacg 6035558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 6401444 - 6401575
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    ||||||||| |||||| |||||||||||||||  |||||||| || |||||  ||||||  ||||   ||  |||||||||||  || |||| ||||| |    
T  6401444 atgaagcacggatacagacacggacaccggacgcgacacggacaccgacacgccgacacaactaaattttttagaaaatcacaaaatacagtgtaattat 6401543  T
Q  145 atatgtcagtgtcatgtcggtgtcagacacga 176  Q
    || |||| ||||| |||| ||||| |||||||    
T  6401544 atgtgtcggtgtcgtgtcagtgtcggacacga 6401575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 15410532 - 15410465
Alignment:
Q  74 gacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataat 141  Q
    |||| |||||||| ||||||||  |||||||||||||||||  ||||||| | |||||||||| ||||    
T  15410532 gacacgacacggacactgacacgccgacaccgctaataatttaagaaaattatatgattcagtgtaat 15410465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 30502500 - 30502389
Alignment:
Q  46 tgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttta 145  Q
    |||||||| |||||| |||||||||||||||| | |||  |  |||| ||    ||||||||||||||| ||||||||||| | ||||||| ||||| ||    
T  30502500 tgaagcacggatacaaacacggacaccggacacgtcacatacgctgaaacccaaacaccgctaataatttgagaaaatcacttaattcagtgtaattata 30502401  T
Q  146 tatgtcagtgtc 157  Q
    | |||| |||||    
T  30502400 tgtgtcggtgtc 30502389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 30542843 - 30542732
Alignment:
Q  46 tgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttta 145  Q
    |||||||| |||||| |||||||||||||||| | |||  |  |||| ||    ||||||||||||||| ||||||||||| | ||||||| ||||| ||    
T  30542843 tgaagcacggatacaaacacggacaccggacacgtcacatacgctgaaacccaaacaccgctaataatttgagaaaatcacttaattcagtgtaattata 30542744  T
Q  146 tatgtcagtgtc 157  Q
    | |||| |||||    
T  30542743 tgtgtcggtgtc 30542732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 38816772 - 38816729
Alignment:
Q  81 cacggatactgacacatcgacaccgctaataattcgagaaaatc 124  Q
    |||||||||||||||  ||||||||||||||||| |||||||||    
T  38816772 cacggatactgacacgccgacaccgctaataatttgagaaaatc 38816729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 4105221 - 4105302
Alignment:
Q  63 cacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaa--atcacatgattcagtataatt 142  Q
    |||||| ||||||||||||||||||||||||||  |||||   ||||||||| || |||  ||||||| ||||||| |||||    
T  4105221 cacggataccggacatgacacggatactgacacgccgacataactaataatttgaaaaaagatcacataattcagtgtaatt 4105302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 21351975 - 21351889
Alignment:
Q  88 actgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacac 174  Q
    ||||||||| ||||||  ||||||||| || ||| |||||| ||||||| |||||  |  |||| |||||||||||||||| |||||    
T  21351975 actgacacaccgacacaactaataattggaaaaagtcacataattcagtgtaattacaagtgtcggtgtcatgtcggtgtccgacac 21351889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 22013379 - 22013429
Alignment:
Q  64 acggacaccggacatgacacggatactgacacatcgacaccgctaataatt 114  Q
    |||||||||||||| |||||||| ||||||||  |||||| ||||||||||    
T  22013379 acggacaccggacacgacacggacactgacacgccgacacagctaataatt 22013429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 34879318 - 34879392
Alignment:
Q  67 gacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataat 141  Q
    |||| ||||| |||||||||||| |||||  || ||||||||| |||| |||||||||| || ||||||| ||||    
T  34879318 gacatcggacttgacacggatacggacacgccggcaccgctaaaaatttgagaaaatcatataattcagtgtaat 34879392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 42469184 - 42469250
Alignment:
Q  62 acacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacat 128  Q
    |||||||||||| ||| |||||||||| ||||||  |||||| | |||||||| |||||||| ||||    
T  42469184 acacggacaccgaacacgacacggataatgacacgccgacacggataataatttgagaaaatgacat 42469250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 6247588 - 6247665
Alignment:
Q  65 cggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||||||| || ||| | ||||||||  ||||||  ||||||||| || |||||||||| ||||||| |||||    
T  6247588 cggacaccggacacgatacgcacactgacacgccgacacatctaataatttgaaaaaatcacataattcagtgtaatt 6247665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 25888408 - 25888339
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataatt 114  Q
    ||||||||| ||| || |||||||||| ||||| ||||||||||| |||||| | ||||  |||||||||    
T  25888408 atgaagcacggatccagacacggacacaggacacgacacggatacagacacaccaacactactaataatt 25888339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 17593778 - 17593730
Alignment:
Q  102 accgctaataattcgagaaaatcacatgattcagtataattttatatgt 150  Q
    ||||||||||||| ||||||||||| | ||||||| ||||| |||||||    
T  17593778 accgctaataatttgagaaaatcacgtaattcagtgtaattatatatgt 17593730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 27144443 - 27144515
Alignment:
Q  79 gacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtc 151  Q
    ||||| || ||||||||  ||||||||||||||||| ||| ||||||||| ||| ||| ||||| ||| ||||    
T  27144443 gacacagacactgacacgccgacaccgctaataatttgaggaaatcacataatttagtgtaattatatgtgtc 27144515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 27932234 - 27932278
Alignment:
Q  98 cgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||||||||||| |||||||| |||| ||||||| |||||    
T  27932234 cgacaccgctaataatttgagaaaattacataattcagtgtaatt 27932278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 28588734 - 28588690
Alignment:
Q  98 cgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||||||| |||||||| ||||||||||||| ||||||| |||||    
T  28588734 cgacaccggtaataatttgagaaaatcacataattcagtgtaatt 28588690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 136
Target Start/End: Complemental strand, 3164138 - 3164047
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagt 136  Q
    ||||||||| |||||| |||||||||||||||| |||||||| | || ||| ||||||| |||||||||| || |||||||||| |||||||    
T  3164138 atgaagcacggatacagacacggacaccggacacgacacggacaatggcacgtcgacacagctaataatttgaaaaaatcacataattcagt 3164047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 16192842 - 16192732
Alignment:
Q  66 ggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggt 165  Q
    ||||| |||||||||| | ||| | |||||| |||||||| |||||||| |||||||| |||| ||||||| ||||| ||| |||   |||| |||||||    
T  16192842 ggacatcggacatgactcagatgccgacacaccgacaccgttaataatttgagaaaataacataattcagtgtaattatatgtgttgatgtcgtgtcggt 16192743  T
Q  166 gtcagacacga 176  Q
    |||||||||||    
T  16192742 gtcagacacga 16192732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 24205154 - 24205057
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||| || ||| |||||||||||||||| |||||||| ||||||||  |||||| | |||||||| |||||||| |||| || |||| |||||    
T  24205154 atgaagcacggacacagacacggacaccggacacgacacggacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaatt 24205057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 4991063 - 4990983
Alignment:
Q  62 acacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||||||||||| ||| |||||||| ||||||||  |||||||||||||| || |||||||| |||| ||||||| |||||    
T  4991063 acacggacaccgaacacgacacggagactgacactccgacaccgctaatagtttgagaaaattacataattcagtgtaatt 4990983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 8383220 - 8383300
Alignment:
Q  62 acacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||||||||| ||||| |||||||| | ||||||  ||||||||||||||||| |||||||||| || ||||||| |||||    
T  8383220 acacggacactggacacgacacggacattgacacgccgacaccgctaataatttgagaaaatcatataattcagtgtaatt 8383300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 28917965 - 28918044
Alignment:
Q  63 cacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||||||||| |||||||| ||||||||  |||||  |||||||||| || |||||||||| ||||||| |||||    
T  28917965 cacggacaccggacacgacacggaaactgacacgccgacatagctaataatttgaaaaaatcacataattcagtgtaatt 28918044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 4466694 - 4466622
Alignment:
Q  64 acggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagt 136  Q
    ||||||||||||||||||||| | ||||||||  |||||||| ||||||||  ||||||||| || |||||||    
T  4466694 acggacaccggacatgacacgaacactgacactccgacaccggtaataatttaagaaaatcatataattcagt 4466622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 10335399 - 10335316
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacat 128  Q
    ||||||||| |||||  |||||||||||||||| |||||||| ||||||||  ||||||  ||||||||| || ||| ||||||    
T  10335399 atgaagcacggatacgaacacggacaccggacacgacacggacactgacacgccgacacaactaataatttgaaaaagtcacat 10335316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 13620837 - 13620786
Alignment:
Q  85 gatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagt 136  Q
    ||||||||||  |||||||||||| ||||| |||||||||||||||||||||    
T  13620837 gatactgacatgtcgacaccgctagtaatttgagaaaatcacatgattcagt 13620786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 1438793 - 1438847
Alignment:
Q  88 actgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||| ||||| |||||| |||| ||||||||||||| |||||||||||||    
T  1438793 actgacacaccgacatcgctaacaatttgagaaaatcacataattcagtataatt 1438847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 142
Target Start/End: Complemental strand, 8587115 - 8587037
Alignment:
Q  64 acggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||||||||||||||||| ||||||||  ||||||  ||| ||||| || |||||||||| ||| ||| |||||    
T  8587115 acggacaccggacatgacacggacactgacacgccgacacatctagtaatttgaaaaaatcacataattaagtgtaatt 8587037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 8039893 - 8039820
Alignment:
Q  100 acaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagaca 173  Q
    ||||||||||||||| |||||||| | || ||||||| ||||| ||| |||| ||||| |||||||||| ||||    
T  8039893 acaccgctaataatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggaca 8039820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 15796407 - 15796310
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||| ||||   |||||||||||||||| |||||||| | ||||||  |||||| | |||||||| || ||||||| || ||||||| |||||    
T  15796407 atgaagcacggatatggacacggacaccggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcatataattcagtgtaatt 15796310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 34307893 - 34307796
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||  |||||  ||||| |||||||||||||||| || ||  ||||   |||||||||||||||| |||||||||||||  |||||| |||||    
T  34307893 atgaagcatggatacggacacgaacaccggacatgacacagacacgaacacgctgacaccgctaataatttgagaaaatcacatatttcagtgtaatt 34307796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 14829657 - 14829724
Alignment:
Q  66 ggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattca 134  Q
    |||||||||||||||||| || ||||||||  |||||| |||||||||| || |||||||||| |||||    
T  14829657 ggacaccggacatgacacagacactgacacgccgacacagctaataatttga-aaaatcacataattca 14829724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 157
Target Start/End: Original strand, 25093448 - 25093560
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    |||||| || |||||| |||| ||||||||||| ||||| || ||| ||||  |||||| | |||| ||| ||||||||||||  ||||||| ||||| |    
T  25093448 atgaagtacggatacaaacacagacaccggacacgacactgacactaacacgccgacactgttaatgatttgagaaaatcacacaattcagtgtaattat 25093547  T
Q  145 atatgtcagtgtc 157  Q
    || |||| |||||    
T  25093548 atgtgtcggtgtc 25093560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 39001996 - 39002100
Alignment:
Q  63 cacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtc 162  Q
    ||||||||||| ||| |||||| | ||||||||| |||||  | ||  |||| || |||||||||| ||||| | ||||| |||||||||||||| |||     
T  39001996 cacggacaccgaacacgacacgtacactgacacaccgacatggataggaatttgaaaaaatcacataattcaatgtaattatatatgtcagtgtcgtgtt 39002095  T
Q  163 ggtgt 167  Q
    |||||    
T  39002096 ggtgt 39002100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 7614475 - 7614416
Alignment:
Q  98 cgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtc 157  Q
    |||||| | ||||||||  |||||||||||| ||||||||||||| |||||||| |||||    
T  7614475 cgacacagttaataatttaagaaaatcacataattcagtataattatatatgtcggtgtc 7614416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 7928449 - 7928508
Alignment:
Q  98 cgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtc 157  Q
    ||||||||||||||||| || |||||||||| ||||||| ||||| ||| |||| |||||    
T  7928449 cgacaccgctaataatttgaaaaaatcacataattcagtgtaattatatgtgtcggtgtc 7928508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 11493440 - 11493377
Alignment:
Q  79 gacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||||||| | |||||| |||||||| ||||||||  ||||||||||||| ||||||| |||||    
T  11493440 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcagtgtaatt 11493377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 32429474 - 32429375
Alignment:
Q  64 acggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcg 163  Q
    ||||||||||||||  ||||| | | ||||||  ||||| |||||||||||  |||||||||||| |||||||  |||| || || || |||||||||||    
T  32429474 acggacaccggacacaacacgaacattgacactccgacaacgctaataatttaagaaaatcacataattcagtgcaattataaatatcggtgtcatgtcg 32429375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 49505210 - 49505155
Alignment:
Q  102 accgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtc 157  Q
    ||||||||||||| ||||||||||||| ||| ||| ||||| ||| ||||||||||    
T  49505210 accgctaataatttgagaaaatcacataatttagtgtaattatatgtgtcagtgtc 49505155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 15544682 - 15544736
Alignment:
Q  88 actgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||||||| | |||||||||||||||| || |||||||||| |||| ||||||||    
T  15544682 actgacacgttgacaccgctaataatttgataaaatcacataattctgtataatt 15544736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 750732 - 750643
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatac-tgacacatcgacaccgctaataattcgagaaaatcacatgattc 133  Q
    ||||||||| |||||  |||||||||||||||| |||||||| || ||||||  ||||||  ||||||||| || || ||||||| ||||    
T  750732 atgaagcacggatacggacacggacaccggacacgacacggacacttgacacggcgacacaactaataatttgaaaatatcacataattc 750643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 5407324 - 5407271
Alignment:
Q  81 cacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattca 134  Q
    ||||||||| |||||  |||||||||||| |||| ||||||||||||| |||||    
T  5407324 cacggataccgacacgccgacaccgctaaaaatttgagaaaatcacataattca 5407271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 7171448 - 7171497
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgaca 94  Q
    ||||||||| |||||  |||| ||||||||||| ||||||||||||||||    
T  7171448 atgaagcacggatacggacacagacaccggacacgacacggatactgaca 7171497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 11313860 - 11313795
Alignment:
Q  98 cgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcg 163  Q
    |||||| |||||||||| ||||||||||||| ||| ||| ||||| ||| ||| |||||| |||||    
T  11313860 cgacactgctaataatttgagaaaatcacataatttagtgtaattatatgtgttagtgtcgtgtcg 11313795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 11665912 - 11666021
Alignment:
Q  67 gacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtg 166  Q
    ||||||||||| |||||  | ||| ||||| ||||| ||||||||||| || |||||||||  ||| ||| ||||| ||| |||| ||||| ||| | ||    
T  11665912 gacaccggacacgacacacacactaacacaccgacaacgctaataatttgataaaatcacacaatttagtgtaattatatgtgtcggtgtcgtgttgatg 11666011  T
Q  167 tcagacacga 176  Q
    | ||||||||    
T  11666012 ttagacacga 11666021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 28678309 - 28678378
Alignment:
Q  105 gctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacac 174  Q
    ||||||||||  | |||||||||| ||| ||||||||| ||| |||| ||||| ||| ||||||||||||    
T  28678309 gctaataatttaataaaatcacataatttagtataattgtatgtgtcggtgtcgtgttggtgtcagacac 28678378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 35994850 - 35994754
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||| |||||  ||| |||||||||||| |||| ||| | |||||   |||||| |||||||||| || |||||||||| ||||||| |||||    
T  35994850 atgaagcacggatacggacatggacaccggacacgacatggacaatgacaagccgacacagctaataatttga-aaaatcacataattcagtgtaatt 35994754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 1550141 - 1550217
Alignment:
Q  100 acaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacga 176  Q
    ||||||||||||||| || |||||||||  ||||||| ||||| ||  |||||||||| |||| ||||  |||||||    
T  1550141 acaccgctaataatttgaaaaaatcacactattcagtgtaattataggtgtcagtgtcgtgtcagtgttcgacacga 1550217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 10690321 - 10690269
Alignment:
Q  99 gacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtc 151  Q
    |||||||||||||||  ||||||||||||| ||||||| ||||| ||| ||||    
T  10690321 gacaccgctaataatctgagaaaatcacataattcagtgtaattatatttgtc 10690269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 23717999 - 23718078
Alignment:
Q  72 cggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtc 151  Q
    ||||||||||||||| ||||||||| ||||||||||||||||| |||||| |||||| ||||||| ||||| ||| ||||    
T  23717999 cggacatgacacggacactgacacaccgacaccgctaataatttgagaaagtcacataattcagtgtaattatatgtgtc 23718078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 24105671 - 24105750
Alignment:
Q  72 cggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtc 151  Q
    ||||||||||||||| ||||||||| ||||||||||||||||| |||||| |||||| ||||||| ||||| ||| ||||    
T  24105671 cggacatgacacggacactgacacaccgacaccgctaataatttgagaaagtcacataattcagtgtaattatatgtgtc 24105750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 31283994 - 31284077
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacat 128  Q
    |||||||||||||||  ||||||||||||||||| ||||| | ||| ||||  |||||| |||||||||| |||||||||||||    
T  31283994 atgaagcacagatacggacacggacaccggacataacacgtacacttacacgccgacactgctaataatttgagaaaatcacat 31284077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 176
Target Start/End: Complemental strand, 34785095 - 34784964
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    |||||||||||||||  |||||||| || |||| |||||||| ||||||||| ||||||  |||||  ||  |||||||||||| ||| ||| ||||| |    
T  34785095 atgaagcacagatacggacacggaccccagacacgacacggacactgacacaccgacacaactaatttttttagaaaatcacataatttagtgtaattat 34784996  T
Q  145 atatgtcagtgtcatgtcggtgtcagacacga 176  Q
    || |||| ||||| ||||||| || |||||||    
T  34784995 atgtgtcggtgtcgtgtcggtatcggacacga 34784964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 142
Target Start/End: Original strand, 21616707 - 21616805
Alignment:
Q  44 aatgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||||||||| |||||  |||| |||||  |||| |||||||| || |||||  ||||||||||||||||| ||||||||||||| ||||||| |||||    
T  21616707 aatgaagcacggatacggacacagacacatgacacgacacggacacggacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaatt 21616805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 18276467 - 18276564
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||| |||||| |||||||||||||||| || || || ||||| |   ||||||||||||||||| ||||||||||| | ||||||| |||||    
T  18276467 atgaagcacggatacagacacggacaccggacacgatacagacactgatatgccgacaccgctaataatttgagaaaatcacttaattcagtgtaatt 18276564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 22084909 - 22084840
Alignment:
Q  81 cacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgt 150  Q
    ||||||||| |||||||| |||||| |||||||| |||||||||| || ||||||| |||||||||||||    
T  22084909 cacggatacggacacatcaacaccgttaataatttgagaaaatcatataattcagtgtaattttatatgt 22084840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 28677854 - 28677952
Alignment:
Q  45 atgaagcacagatacatacacggacaccggaca-tgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||||||||| |||||| ||| |||||| |||||| || ||||  ||  ||||||||||||||||| || |||||||||| ||||||| |||||    
T  28677854 atgaagcacagatacgtacacgtacaacggacactgacactgacactggaacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaatt 28677952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 33519751 - 33519805
Alignment:
Q  64 acggacaccggacatgacacggatactgacacatcgacaccgctaataattcgag 118  Q
    |||||||||||||| ||| |||||||||||||| |||||||||||||||| ||||    
T  33519751 acggacaccggacacgacgcggatactgacacaccgacaccgctaataatccgag 33519805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 28412313 - 28412393
Alignment:
Q  62 acacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||||| |||| |||||||| ||| |||| || |||||| |||||||| || |||||||||| ||||||| |||||    
T  28412313 acacggacaccagacacgacacggacactaacacgtcaacaccgttaataatttgataaaatcacataattcagtgtaatt 28412393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 31808066 - 31808134
Alignment:
Q  88 actgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgt 156  Q
    ||||||||| |||||||||||||||||  | |||||||||| ||||||| ||||| ||| |||||||||    
T  31808066 actgacacaccgacaccgctaataatttaacaaaatcacataattcagtgtaattatatgtgtcagtgt 31808134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 30404936 - 30404866
Alignment:
Q  72 cggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||||||||| ||||||||  |||||| | |||||||| || |||||||||| ||||||| |||||    
T  30404936 cggacatgacacggacactgacacgccgacacggttaataatttgaaaaaatcacataattcagtgtaatt 30404866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 44860320 - 44860397
Alignment:
Q  99 gacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacga 176  Q
    |||||||||||||||| ||||||||| ||| ||||||| ||||| ||| |||| ||||| ||| |||||  |||||||    
T  44860320 gacaccgctaataatttgagaaaatcgcataattcagtgtaattatatgtgtcggtgtcgtgttggtgttggacacga 44860397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 18054912 - 18054852
Alignment:
Q  50 gcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaat 110  Q
    ||||||||||| |||||||||||||||| |||| ||| || ||||| ||||||| ||||||    
T  18054912 gcacagatacagacacggacaccggacacgacagggacaccgacacgtcgacacagctaat 18054852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 174
Target Start/End: Complemental strand, 24975429 - 24975309
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    ||||||||||||||||  ||||||||||||||| |||||      ||||||   |||||||||||||||| |||||||||  || ||||||| ||| | |    
T  24975429 atgaagcacagatacaggcacggacaccggacacgacac------tgacac---gacaccgctaataatttgagaaaatcgtataattcagtgtaaatat 24975339  T
Q  145 atatgtcagtgtcatgtcggtgtcagacac 174  Q
    ||  ||| ||||| |||| |||||||||||    
T  24975338 atgcgtcggtgtcgtgtccgtgtcagacac 24975309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 31018557 - 31018633
Alignment:
Q  66 ggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||||||||| | |||| ||| ||||||||  | |||||||||||||||  |||||||||||||||| ||| |||||    
T  31018557 ggacaccggatacgacatggacactgacacgccaacaccgctaataatttcagaaaatcacatgatttagtgtaatt 31018633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 176
Target Start/End: Original strand, 17776551 - 17776664
Alignment:
Q  62 acacggacaccggacat--gacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcat 159  Q
    |||||||||||||||||  ||||||   ||||||||| ||| |||  ||||||||  |||||| ||||| | ||||| ||||| ||| |||||||||||     
T  17776551 acacggacaccggacatcagacacg---actgacacaccgataccaataataatttaagaaaaccacataagtcagtgtaattatatgtgtcagtgtcaa 17776647  T
Q  160 gtcggtgtcagacacga 176  Q
    ||||||||  |||||||    
T  17776648 gtcggtgttggacacga 17776664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 21782909 - 21782834
Alignment:
Q  67 gacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||| ||||| |||||  | ||||||||  |||||| |||||||||| ||||||||||||| ||||||| |||||    
T  21782909 gacactggacacgacacaaacactgacacgccgacactgctaataatttgagaaaatcacataattcagtgtaatt 21782834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 39323244 - 39323307
Alignment:
Q  79 gacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||||||| ||||| || |||||||||||||||||| || ||||| |||| ||||||| |||||    
T  39323244 gacacggacactgaaacgtcgacaccgctaataatttgacaaaattacataattcagtgtaatt 39323307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 18589171 - 18589254
Alignment:
Q  72 cggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtc 157  Q
    ||||||||||||||||||| ||||  |||||| ||||||||||  ||||||| |||  ||||||| ||| | ||| ||||||||||    
T  18589171 cggacatgacacggatactaacacgccgacactgctaataatt--agaaaattacacaattcagtctaactatatgtgtcagtgtc 18589254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 18631512 - 18631462
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacac 95  Q
    |||||||||||||||  |||||||||||||||| |||||||| ||| ||||    
T  18631512 atgaagcacagatacgaacacggacaccggacacgacacggacactaacac 18631462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 175
Target Start/End: Complemental strand, 36409711 - 36409612
Alignment:
Q  74 gacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagaca 173  Q
    |||| |||||||||||| |||   |||||||||| |||||| || |||||||||| ||| ||| |||  |||| |||| ||||||||| |||||| ||||    
T  36409711 gacacgacacggatactcacatgccgacaccgctgataatttgaaaaaatcacataatttagtgtaa--ttatgtgtcggtgtcatgttggtgtctgaca 36409614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 37411304 - 37411266
Alignment:
Q  98 cgacaccgctaataattcgagaaaatcacatgattcagt 136  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  37411304 cgacaccgctaataatttgagaaaatcacataattcagt 37411266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 25846743 - 25846784
Alignment:
Q  101 caccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    |||| ||||||||| ||||||||||||||||||||| |||||    
T  25846743 caccactaataatttgagaaaatcacatgattcagtgtaatt 25846784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 29970619 - 29970566
Alignment:
Q  88 actgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataat 141  Q
    |||||||||| |||||||||||||||| ||||||||| |||  |||||| ||||    
T  29970619 actgacacattgacaccgctaataatttgagaaaatcgcatagttcagtgtaat 29970566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 1327977 - 1328021
Alignment:
Q  98 cgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||||||||||| |||||||||| |  |||||||||||||    
T  1327977 cgacaccgctaataatttgagaaaatcataaaattcagtataatt 1328021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 4882774 - 4882678
Alignment:
Q  80 acacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacga 176  Q
    |||| ||||||||||| |||| ||||||||| ||| || ||||| | || ||||||| |||||  |  ||||  |||| ||||||||||||||||||    
T  4882774 acacagatactgacacgtcgataccgctaattatttgaaaaaatgatataattcagtgtaattacaagtgtcgatgtcgtgtcggtgtcagacacga 4882678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 18420530 - 18420458
Alignment:
Q  62 acacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattca 134  Q
    |||||||||||| ||| || ||  ||||||||||  | |||| |||||||||| ||||||||||||| |||||    
T  18420530 acacggacaccgaacacgagacatatactgacacgccaacactgctaataatttgagaaaatcacataattca 18420458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 21091706 - 21091782
Alignment:
Q  82 acggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtca 158  Q
    ||||| ||||||||| |||||||||||||||||  ||||||| ||||  |||||| |||||  |  |||||||||||    
T  21091706 acggacactgacacaccgacaccgctaataatttaagaaaataacatacttcagtgtaattacaagtgtcagtgtca 21091782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 175
Target Start/End: Original strand, 20990 - 21119
Alignment:
Q  46 tgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttta 145  Q
    |||| |||||||||  ||||||||||| |||| |||||||| |||||||    ||||| | |||||||| ||||||||||||| | || |||||||| ||    
T  20990 tgaaacacagatacgaacacggacaccagacacgacacggacactgacatgctgacacggttaataatttgagaaaatcacataagtcggtataattata 21089  T
Q  146 tatgtcagtgtcatgtcggtgtcagacacg 175  Q
    | |||| || || |||||||||||||||||    
T  21090 tgtgtcggtatcgtgtcggtgtcagacacg 21119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 166
Target Start/End: Original strand, 20137 - 20239
Alignment:
Q  64 acggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcg 163  Q
    |||||||||||||| |||||||| | ||||||  |||||| |||||||||| || |||||||||| ||||||| |||||  |  |||||||||| |||||    
T  20137 acggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgtcg 20236  T
Q  164 gtg 166  Q
    |||    
T  20237 gtg 20239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 13365 - 13437
Alignment:
Q  64 acggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagt 136  Q
    |||||||||||| |||||||||| ||||||||  ||||||  ||||||||| ||||||||||||| |||||||    
T  13365 acggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatcacataattcagt 13437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 21962 - 21890
Alignment:
Q  64 acggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagt 136  Q
    |||||||||||| |||||||||| ||||||||  ||||||  ||||||||| ||||||||||||| |||||||    
T  21962 acggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatcacataattcagt 21890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 3262 - 3340
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaat 123  Q
    ||||||||| |||| | |||||||||||||||| ||||||||||||||||| ||||||  ||||| ||||  |||||||    
T  3262 atgaagcacggatatagacacggacaccggacacgacacggatactgacacgtcgacaatgctaacaattttagaaaat 3340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 8629 - 8739
Alignment:
Q  62 acacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgt 161  Q
    |||||||||||||||| |||| ||| |||||||| |||||||  |||||||||   |||||||||||  |||||||||||| ||  |||| ||||| |||    
T  8629 acacggacaccggacacgacatggacactgacacgtcgacacttctaataatttaggaaaatcacatagttcagtataattataagtgtcggtgtcgtgt 8728  T
Q  162 cggtgtcagac 172  Q
    |  ||||||||    
T  8729 ctatgtcagac 8739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 8744 - 8841
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||  |||||  |||||||||||||||| |||||||| ||||||||  |||||| |||||||||| || ||||||| || ||| ||| |||||    
T  8744 atgaagcatggatacggacacggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcatattatttagtgtaatt 8841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 176
Target Start/End: Original strand, 241558 - 241671
Alignment:
Q  63 cacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtc 162  Q
    ||||||||||||||| |||||||| ||||||||  |||||| |||||||||| |  |||||||||| ||| ||| ||||| |   |||| ||||| |||     
T  241558 cacggacaccggacacgacacggacactgacacgccgacacagctaataatttggaaaaatcacataatttagtgtaattatgagtgtcggtgtcgtgtt 241657  T
Q  163 ggtgtcagacacga 176  Q
    |||||| |||||||    
T  241658 ggtgtcggacacga 241671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 167
Target Start/End: Original strand, 987 - 1103
Alignment:
Q  51 cacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgt 150  Q
    |||||||||| ||| | |||||| | | ||||| ||  |||||||| ||||||||||||||||| || ||||| |||| ||||||| ||| | ||| |||    
T  987 cacagatacaaacatgaacaccgtatacgacacagacgctgacacaccgacaccgctaataatttgaaaaaattacataattcagtgtaactatatgtgt 1086  T
Q  151 cagtgtcatgtcggtgt 167  Q
    ||||||  |||||||||    
T  1087 cagtgtggtgtcggtgt 1103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 577 - 478
Alignment:
Q  43 taatgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||||| |||||  |||||||||||| ||| | |||||| ||||| ||  |||||| |||||||||| || |||||||||  ||||||| |||||    
T  577 taatgaagcacggatacggacacggacaccgaacacgccacggacactgatacgccgacactgctaataatttgaaaaaatcacaaaattcagtgtaatt 478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 225381 - 225298
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacat 128  Q
    ||||| ||| || ||| |||||||||||||||| |||||||| ||||||||  |||||| | |||||||| |||||||| ||||    
T  225381 atgaaacacggacacagacacggacaccggacacgacacggacactgacacgccgacacagataataatttgagaaaatgacat 225298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 9799 - 9729
Alignment:
Q  106 ctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgtcagacacga 176  Q
    ||||||||| ||||||||||| | ||||||| ||||| ||| |||| ||||| ||| ||||||||||||||    
T  9799 ctaataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgtcgtgttggtgtcagacacga 9729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 178910 - 178813
Alignment:
Q  67 gacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatca-catgattcagtataattttatatgtcagtgtcatgtcg 163  Q
    ||||||||||| |||||||| ||||||||  ||||||  ||||||||| || ||||||| ||| ||||||| |||||  |  ||||||||||||||||    
T  178910 gacaccggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatcatcataattcagtgtaattacaagtgtcagtgtcatgtcg 178813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 44584 - 44516
Alignment:
Q  99 gacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtcggtgt 167  Q
    ||||||||||| |||| ||||||||||||| ||||||| ||||| ||| |||| || || |||||||||    
T  44584 gacaccgctaaaaatttgagaaaatcacataattcagtgtaattatatgtgtcggtatcgtgtcggtgt 44516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 92790 - 92850
Alignment:
Q  82 acggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||| ||||||||  ||||||||||||||||| |||||||| |||| ||||||| |||||    
T  92790 acggacactgacacgccgacaccgctaataatttgagaaaattacataattcagtgtaatt 92850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 9486 - 9565
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatc 124  Q
    |||||||||||||||| | ||||||||||||||  ||| ||| ||||| |||   ||||||||||||||  |||||||||    
T  9486 atgaagcacagatacagaaacggacaccggacacaacatggacactgagacactcacaccgctaataatatgagaaaatc 9565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 68355 - 68232
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatttt 144  Q
    |||||||||| ||||| | || ||||||  |||  ||| | ||||||||||||   ||||| |||||||| |||||||||| || ||| ||||||||| |    
T  68355 atgaagcacaaatacaaaaacagacaccaaacacaacatgaatactgacacattagcaccgttaataatttgagaaaatcatataatttagtataattat 68256  T
Q  145 atatgtcagtgtcatgtcggtgtc 168  Q
    |  |||||||||| | ||||||||    
T  68255 aggtgtcagtgtcgtatcggtgtc 68232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 53147 - 53254
Alignment:
Q  62 acacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgt 161  Q
    ||||| |||||||||| ||||||    |||||||  ||| ||||| ||||||| ||||||||||||| ||||||| ||||| ||  |||| ||| | |||    
T  53147 acacgaacaccggacacgacacg----ctgacacgccgataccgccaataatttgagaaaatcacataattcagtgtaattataagtgtcggtgccgtgt 53242  T
Q  162 cggtgtcagaca 173  Q
    ||||||| ||||    
T  53243 cggtgtcggaca 53254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 135378 - 135308
Alignment:
Q  92 acacatcgacaccgctaataattcgagaaaatcacatgattcagtataattttatatgtcagtgtcatgtc 162  Q
    ||||| |||||| |||||||||| ||||||||||||| |||| || ||||| ||| |||| ||||| ||||    
T  135378 acacaccgacactgctaataatttgagaaaatcacataattctgtgtaattatatgtgtcggtgtcgtgtc 135308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 130428 - 130525
Alignment:
Q  45 atgaagcacagatacatacacggacaccggacatgacacggatactgacacatcgacaccgctaataattcgagaaaatcacatgattcagtataatt 142  Q
    ||||||||  |||||  |||||||||||||||| |||||||| | |||||   |||||| | ||||| || || |||||||||| ||||||| |||||    
T  130428 atgaagcatggatacggacacggacaccggacacgacacggacaatgacaagccgacacagttaatagtttgaaaaaatcacataattcagtgtaatt 130525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 26384 - 26428
Alignment:
Q  90 tgacacatcgacaccgctaataattcgagaaaatcacatgattca 134  Q
    |||||| |||||||| ||||||||| ||||||||||||| |||||    
T  26384 tgacacgtcgacaccactaataatttgagaaaatcacataattca 26428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University