View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14740_low_13 (Length: 268)

Name: NF14740_low_13
Description: NF14740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14740_low_13
NF14740_low_13
[»] chr6 (11 HSPs)
chr6 (14-217)||(11155304-11155507)
chr6 (14-217)||(11195751-11195954)
chr6 (12-187)||(11165386-11165561)
chr6 (12-214)||(11169586-11169788)
chr6 (2-187)||(11208435-11208620)
chr6 (15-214)||(11274970-11275169)
chr6 (14-188)||(11132051-11132225)
chr6 (77-213)||(11242016-11242153)
chr6 (86-167)||(11315745-11315826)
chr6 (216-252)||(11155254-11155290)
chr6 (216-252)||(11195701-11195737)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 11155507 - 11155304
Alignment:
Q  14 agaagctgagaagtacaaagatgaagacaagaggtatatgaagaaggtagaagcgagagttgtactagagacgtatgcatacaacatgaggaatgccata 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11155507 agaagctgagaagtacaaagatgaagacaagaggtatatgaagaaggtagaagcgagagttgtactagagacgtatgcatacaacatgaggaatgctata 11155408  T
Q  114 aatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaataaagaaattgatttggtcttaaggtggttcgatgttaatgtggttg 213  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||| | | ||||||||||||| | |||| |||||||||| ||| |||    
T  11155407 aatgataaggatattagtttgatgctttcgtcaaaagaaaaggaaaagatcaataatgcacttgatttggtctttacgtggctcgatgttaacgtgattg 11155308  T
Q  214 cgga 217  Q
    ||||    
T  11155307 cgga 11155304  T

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Target: chr6; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 11195954 - 11195751
Alignment:
Q  14 agaagctgagaagtacaaagatgaagacaagaggtatatgaagaaggtagaagcgagagttgtactagagacgtatgcatacaacatgaggaatgccata 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||| |||||||||||||||||||||||| |||    
T  11195954 agaagctgagaagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgata 11195855  T
Q  114 aatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaataaagaaattgatttggtcttaaggtggttcgatgttaatgtggttg 213  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| | |||| |||||||||| |||||||    
T  11195854 aatgataaggacattagtttgatgctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttcatgtggctcgatgttaacgtggttg 11195755  T
Q  214 cgga 217  Q
    ||||    
T  11195754 cgga 11195751  T

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Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 11165561 - 11165386
Alignment:
Q  12 agagaagctgagaagtacaaagatgaagacaagaggtatatgaagaaggtagaagcgagagttgtactagagacgtatgcatacaacatgaggaatgcca 111  Q
    |||||||||||||| |||||||||||||||| |||| ||| ||||||||| |||||||||  || |||||||| ||| |||||||| |||||| || |||    
T  11165561 agagaagctgagaaatacaaagatgaagacatgaggcataggaagaaggttgaagcgagaaatgcactagagaggtacgcatacaatatgagggattcca 11165462  T
Q  112 taaatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaataaagaaattgatttggtctt 187  Q
    ||||||||   ||| |||||| || |||||||||||||||||||||||  |||||||| | | |||||||||||||    
T  11165461 taaatgatccagatgttagctcgaagctttcgtcaaaagaaaaggaaaatatcaataacgcagttgatttggtctt 11165386  T

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Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 11169788 - 11169586
Alignment:
Q  12 agagaagctgagaagtacaaagatgaagacaagaggtatatgaagaaggtagaagcgagagttgtactagagacgtatgcatacaacatgaggaatgcca 111  Q
    ||||||||||| || |||||||||||||||| |||| ||| ||||||||| |||||||||  || |||||||| ||| |||||||| |||||| |   ||    
T  11169788 agagaagctgacaaatacaaagatgaagacatgaggcataggaagaaggttgaagcgagaaatgcactagagatgtacgcatacaatatgagggaattca 11169689  T
Q  112 taaatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaataaagaaattgatttggtcttaaggtggttcgatgttaatgtggt 211  Q
    ||||||||  ||||||||||| || | |||||||||||||||||| ||  |||||||| | || |||||||||||| | |||| | || |||||||||||    
T  11169688 taaatgatccggatattagctcgaagatttcgtcaaaagaaaaggcaaacatcaataacgcaactgatttggtctttaagtggcttgacgttaatgtggt 11169589  T
Q  212 tgc 214  Q
    |||    
T  11169588 tgc 11169586  T

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Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 2 - 187
Target Start/End: Complemental strand, 11208620 - 11208435
Alignment:
Q  2 gaggaggagcagagaagctgagaagtacaaagatgaagacaagaggtatatgaagaaggtagaagcgagagttgtactagagacgtatgcatacaacatg 101  Q
    ||||| || ||| ||||||||||| |||||||||||||||| |||| ||| ||||||||| ||| |||||  || |||||||| ||| |||||||| |||    
T  11208620 gaggatgatcagtgaagctgagaaatacaaagatgaagacatgaggcataggaagaaggttgaatcgagaaatgcactagagaagtacgcatacaatatg 11208521  T
Q  102 aggaatgccataaatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaataaagaaattgatttggtctt 187  Q
    ||| || |||||||||||   ||  |||||| || ||||||||||||||||||||||| ||||||||| | | |||||||||||||    
T  11208520 agggattccataaatgatccagaagttagctcgaagctttcgtcaaaagaaaaggaaaagatcaataacgcagttgatttggtctt 11208435  T

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Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 11275169 - 11274970
Alignment:
Q  15 gaagctgagaagtacaaagatgaagacaagaggtatatgaagaaggtagaagcgagagttgtactagagacgtatgcatacaacatgaggaatgccataa 114  Q
    ||||||||||||||||||||||||||||  ||| ||| ||| ||||| |||||||||  || |||||||| ||| |||||||| |||||| ||  |||||    
T  11275169 gaagctgagaagtacaaagatgaagacattaggcataggaaaaaggttgaagcgagaaatgcactagagaagtacgcatacaatatgagggatttcataa 11275070  T
Q  115 atgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaataaagaaattgatttggtcttaaggtggttcgatgttaatgtggttgc 214  Q
    |||||   ||||||| || || |||||| | ||||||||||||||  |||||||| | || |||||||||||| | |||| | || ||||||||||||||    
T  11275069 atgatcccgatattatctcgaagctttcattaaaagaaaaggaaaacatcaataatgcaactgatttggtctttaagtggcttgacgttaatgtggttgc 11274970  T

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Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 11132225 - 11132051
Alignment:
Q  14 agaagctgagaagtacaaagatgaagacaagaggtatatgaagaaggtagaagcgagagttgtactagagacgtatgcatacaacatgaggaatgccata 113  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||||||||||| | |||  || | | |||| || |||||| ||||||||||||||||||    
T  11132225 agaagctgagaagtacaaggatgaagacaagatgtataggaagaaggtagaaacaagaaatgcattggagaagtgtgcatataacatgaggaatgccata 11132126  T
Q  114 aatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaataaagaaattgatttggtctta 188  Q
    || |||||||| ||||   ||| |||||||| | |||| |||||| ||||| ||||   |||||||| |||||||    
T  11132125 aacgataaggagattatgatgaagctttcgttagaagacaaggaagtgatcgataacacaattgattcggtctta 11132051  T

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Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 213
Target Start/End: Original strand, 11242016 - 11242153
Alignment:
Q  77 actagagacgtatgcatacaacatgaggaatgccataaatgataaggatattagcttgaggctttcgtcaaa--agaaaaggaaatgatcaataaagaaa 174  Q
    |||| ||| ||||||||||||||| ||||||||||||||||||||||||||| ||| || |||||||| |||  | ||||||||| ||| ||||||| ||    
T  11242016 actaaagaagtatgcatacaacataaggaatgccataaatgataaggatatttgctcgaagctttcgtaaaacgaaaaaaggaaaagattaataaagcaa 11242115  T
Q  175 ttgatttggtcttaaggtggttcgatgttaatgtggttg 213  Q
    || |||||||||| |  ||| | ||||||||||||||||    
T  11242116 tt-atttggtcttcacatggcttgatgttaatgtggttg 11242153  T

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Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 11315745 - 11315826
Alignment:
Q  86 gtatgcatacaacatgaggaatgccataaatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaat 167  Q
    |||||||||||| |||| | ||||||| |||||||||||||||||||| | ||||| ||||||||||||| ||| |||||||    
T  11315745 gtatgcatacaagatgaaggatgccattaatgataaggatattagctttatgcttttgtcaaaagaaaagaaaaagatcaat 11315826  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 11155290 - 11155254
Alignment:
Q  216 gagtattatacgagcattctttcaagtgtatttgatg 252  Q
    |||||||||||||||||||||||||||||||||||||    
T  11155290 gagtattatacgagcattctttcaagtgtatttgatg 11155254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 11195737 - 11195701
Alignment:
Q  216 gagtattatacgagcattctttcaagtgtatttgatg 252  Q
    |||||||||||||||||||||||||||||||||||||    
T  11195737 gagtattatacgagcattctttcaagtgtatttgatg 11195701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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