View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14740_low_14 (Length: 252)

Name: NF14740_low_14
Description: NF14740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14740_low_14
NF14740_low_14
[»] chr3 (10 HSPs)
chr3 (3-252)||(3356121-3356370)
chr3 (14-250)||(3302702-3302938)
chr3 (30-217)||(3321025-3321212)
chr3 (30-217)||(3309423-3309610)
chr3 (15-244)||(3202078-3202307)
chr3 (24-244)||(3220234-3220454)
chr3 (3-130)||(3722666-3722793)
chr3 (194-252)||(3722789-3722847)
chr3 (28-248)||(3197127-3197347)
chr3 (146-202)||(2854618-2854674)


Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 3 - 252
Target Start/End: Complemental strand, 3356370 - 3356121
Alignment:
Q  3 tccaagaatatattgagaagcactggtaactcaggaattcgtgctgtattagttttcgacaaaggtgaattgcctaaacatttcatggatgaattatctg 102  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3356370 tccaacaatgtattgagaagcactggtaactcaggaattcgtgctgtattagttttcgacaaaggtgaattgcctaaacatttcatggatgaattatctg 3356271  T
Q  103 tcaagttcaagcttttgagagtacttgactttgagagttcagttttgaattatattcctgataacttggggagtcttttccacctaaggtacttgaacct 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3356270 tcaagttcaagcttttgagagtacttgactttgagagttcagttttgaattatattcctgataacttggggagtcttttccacctaaggtacttgaacct 3356171  T
Q  203 gagtcgtacaaaagtcacagttattccaagttctattggtaacctaatca 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3356170 gagtcgtacaaaagtcacagttattccaagttctattggtaacctaatca 3356121  T

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Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 3302938 - 3302702
Alignment:
Q  14 attgagaagcactggtaactcaggaattcgtgctgtattagttttcgacaaaggtgaattgcctaaacatttcatggatgaattatctgtcaagttcaag 113  Q
    |||||||| |||| | ||||||||||||||||| ||||| || || ||||||||||||||||||||||| |||||||||| ||||||||||||||| |||    
T  3302938 attgagaaacactagcaactcaggaattcgtgccgtatttgtctttgacaaaggtgaattgcctaaacagttcatggatgtattatctgtcaagtttaag 3302839  T
Q  114 cttttgagagtacttgactttgagagttcagttttgaattatattcctgataacttggggagtcttttccacctaaggtacttgaacctgagtcgtacaa 213  Q
    ||||| | ||||||||| |||||||  ||    ||||||| |||||||||||| ||||| | ||||||||||||||||||||||||| |||||| ||| |    
T  3302838 cttttaaaagtacttgattttgagaagtcttcattgaattttattcctgataatttgggaaatcttttccacctaaggtacttgaacttgagtcatacca 3302739  T
Q  214 aagtcacagttattccaagttctattggtaacctaat 250  Q
    |||| || ||| ||||||| || || ||||| |||||    
T  3302738 aagttacggttcttccaagatccatcggtaatctaat 3302702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 30 - 217
Target Start/End: Complemental strand, 3321212 - 3321025
Alignment:
Q  30 aactcaggaattcgtgctgtattagttttcgacaaaggtgaattgcctaaacatttcatggatgaattatctgtcaagttcaagcttttgagagtacttg 129  Q
    |||||||||||||||||| |||| || ||||||||||||||||| |||||||| ||||| |||| ||||||||  |||||||||||||||| ||||||||    
T  3321212 aactcaggaattcgtgctatatttgtcttcgacaaaggtgaatttcctaaacagttcattgatggattatctgctaagttcaagcttttgaaagtacttg 3321113  T
Q  130 actttgagagttcagttttgaattatattcctgataacttggggagtcttttccacctaaggtacttgaacctgagtcgtacaaaagt 217  Q
    | ||||||| |||  | ||||||| |||||||||||||||||| | ||||| || ||||||||||||||||||||||| |||||||||    
T  3321112 attttgagaattctttgttgaattgtattcctgataacttgggaaatctttacctcctaaggtacttgaacctgagtcatacaaaagt 3321025  T

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Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 30 - 217
Target Start/End: Complemental strand, 3309610 - 3309423
Alignment:
Q  30 aactcaggaattcgtgctgtattagttttcgacaaaggtgaattgcctaaacatttcatggatgaattatctgtcaagttcaagcttttgagagtacttg 129  Q
    ||||| || ||||||||| | || ||||| |||| || |||||| ||||| || ||||| |||| |||||||| ||||||||||||||||| ||||||||    
T  3309610 aactctggcattcgtgctatttttgtttttgacagagatgaatttcctaagcagttcatagatggattatctgccaagttcaagcttttgaaagtacttg 3309511  T
Q  130 actttgagagttcagttttgaattatattcctgataacttggggagtcttttccacctaaggtacttgaacctgagtcgtacaaaagt 217  Q
    | ||| ||| |||  | |||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||| |||||||||    
T  3309510 attttcagaattctttgttgaattatattcctgataacttgggaaatcttttcctcctaaggtacttgaacctgagtcatacaaaagt 3309423  T

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Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 3202078 - 3202307
Alignment:
Q  15 ttgagaagcactggtaactcaggaattcgtgctgtattagttttcgacaaaggtgaattgcctaaacatttcatggatgaattatctgtcaagttcaagc 114  Q
    |||||||||||  | |||||||||||||||||| | || ||||||||||||| ||||||  ||||| |||||||||||| ||| ||||  ||||||||||    
T  3202078 ttgagaagcacaagcaactcaggaattcgtgctatttttgttttcgacaaagatgaattatctaaagatttcatggatggattgtctgcaaagttcaagc 3202177  T
Q  115 ttttgagagtacttgactttgagagttcagttttgaattatattcctgataacttggggagtcttttccacctaaggtacttgaacctgagtcgtacaaa 214  Q
    |||||| ||| ||||| || ||||  ||  | ||||||| | |||||||||||||||||| ||||||||| || | |||||||||| |||| || |||||    
T  3202178 ttttgaaagtgcttgatttcgagaactccctgttgaattttgttcctgataacttggggaatcttttccatctgaagtacttgaacttgagccgcacaaa 3202277  T
Q  215 agtcacagttattccaagttctattggtaa 244  Q
    |||||||||| |||| || || ||||||||    
T  3202278 agtcacagttcttcctagatcaattggtaa 3202307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 244
Target Start/End: Complemental strand, 3220454 - 3220234
Alignment:
Q  24 actggtaactcaggaattcgtgctgtattagttttcgacaaaggtgaattgcctaaacatttcatggatgaattatctgtcaagttcaagcttttgagag 123  Q
    |||||||||||||||||||| |||||||| |||||||||||||| ||| ||  | ||||||||||||||| ||||  |  ||||||||||||||||| ||    
T  3220454 actggtaactcaggaattcgcgctgtatttgttttcgacaaaggagaactggatgaacatttcatggatggattagtttccaagttcaagcttttgaaag 3220355  T
Q  124 tacttgactttgagagttcagttttgaattatattcctgataacttggggagtcttttccacctaaggtacttgaacctgagtcgtacaaaagtcacagt 223  Q
    ||||||| |||||||  ||    ||||||||| ||||||||||||| ||||  ||||||||||||| |||| |||||||||||| ||| ||||| |  ||    
T  3220354 tacttgattttgagaaatctcggttgaattatgttcctgataacttagggaaccttttccacctaacgtacctgaacctgagtcatacgaaagttaaggt 3220255  T
Q  224 tattccaagttctattggtaa 244  Q
    |||||| || || ||||||||    
T  3220254 tattcctagatccattggtaa 3220234  T

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Target: chr3; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 3722666 - 3722793
Alignment:
Q  3 tccaagaatatattgagaagcactggtaactcaggaattcgtgctgtattagttttcgacaaaggtgaattgcctaaacatttcatggatgaattatctg 102  Q
    ||||| ||||| ||| |||| | |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||     
T  3722666 tccaacaatatgttgcgaagaaatggtaactcaggaattcgcgctgtattagttttcgacaaaggtgaatttcctaaacggttcatggatggattatctt 3722765  T
Q  103 tcaagttcaagcttttgagagtacttga 130  Q
     ||||||||||||||||||||| |||||    
T  3722766 ccaagttcaagcttttgagagttcttga 3722793  T

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Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 3722789 - 3722847
Alignment:
Q  194 cttgaacctgagtcgtacaaaagtcacagttattccaagttctattggtaacctaatca 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3722789 cttgaacctgagtcgtacaaaagtcacagttattccaagttctattggtaacctaatca 3722847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 3197347 - 3197127
Alignment:
Q  28 gtaactcaggaattcgtgctgtattagttttcgacaaaggtgaattgcctaaacatttcatggatgaattatctgtcaagttcaagcttttgagagtact 127  Q
    |||||||||||||||||||| | || ||||| ||||   | ||| || ||||| ||||||| |||   |||||||||||||||||| || | | ||| ||    
T  3197347 gtaactcaggaattcgtgctatctttgtttttgacagtagagaaatgtctaaatatttcattgatagtttatctgtcaagttcaagtttgtaaaagttct 3197248  T
Q  128 tgactttgagagttcagttttgaattatattcctgataacttggggagtcttttccacctaaggtacttgaacctgagtcgtacaaaagtcacagttatt 227  Q
    |||||||| |  |||  | ||||||||| ||||||| |||||||| | |||  || | |||| |||||||||||| |||| ||||||||| |  ||| ||    
T  3197247 tgactttgggcattctttgttgaattatgttcctgagaacttgggaaatctactcaatctaaagtacttgaacctaagtcatacaaaagttatggttctt 3197148  T
Q  228 ccaagttctattggtaaccta 248  Q
    || || ||||| |||||||||    
T  3197147 cctagatctatcggtaaccta 3197127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 2854674 - 2854618
Alignment:
Q  146 tttgaattatattcctgataacttggggagtcttttccacctaaggtacttgaacct 202  Q
    |||||||||||||||| |||| || |||| |||||| ||| |||||||||| |||||    
T  2854674 tttgaattatattcctaataattttgggaatctttttcacttaaggtacttaaacct 2854618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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