View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14740_low_2 (Length: 584)
Name: NF14740_low_2
Description: NF14740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14740_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 26 - 570
Target Start/End: Original strand, 13234015 - 13234559
Alignment:
| Q |
26 |
acatactcaagtgaaatccttccagcaacaccaacaccacatagcagcgactacgtagtcgacgagaatgactaccttacaccaaccaatagctcacaag |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13234015 |
acatactcaagtgaaatccttccagcaacaccaacaccacatagcagtgactacgtagtcgacgagaatgactaccttacaccaacaaatagctcacaag |
13234114 |
T |
|
| Q |
126 |
aacatctaggtccaaagtttgcaaattcctacatagcagagacatggatcctaatgcgccgcaacttcaccaacatacggagaacccccgagctttttct |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13234115 |
aacatctaggtccaaagtttgcaaattcctacataggagagacatggatcctaatgcgccgcaacttcacaaacatacggagaacccccgagctttttct |
13234214 |
T |
|
| Q |
226 |
atcaagactaatggtcctcaccttcatgggagttatgatggcaacaatgttccacaatccaaaaaataccttacaaggaatcacaaatcgtctcagtttc |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13234215 |
atcaagactaatggtcctcaccttcatgggagttatgatggcaacaatgttccacaatccaaaaaataccttacaaggaatcacaaatcgtctcagtttc |
13234314 |
T |
|
| Q |
326 |
ttcattttcacagtgtgtctgtttttcttctcttcaaatgatgcggtccctgccttcatccaagagaggttcatcttcatccgcgaaacttctcataatg |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13234315 |
ttcattttcacagtgtgtctgtttttcttctcttcaaatgatgccgtccctgccttcatccaagagaggttcatcttcatccgcgaaacttctcataatg |
13234414 |
T |
|
| Q |
426 |
cctatagagcttcttgttacaccatagctagcctaatcactcacatgccgtttcttgcgctccaagctttagcctatgctgccattgtttggtttgcttt |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13234415 |
cctatagagcttcttgttacaccatagctagcctaatcactcacatgccgtttcttgcgctccaagctttagcctatgctgccattgtttggtttgcttt |
13234514 |
T |
|
| Q |
526 |
agaacttagaggcccatttatatacttcttccttgttctcttcat |
570 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13234515 |
agaacttagaggcccatttatatacttcttccttgttctcttcat |
13234559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University