View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14740_low_6 (Length: 421)
Name: NF14740_low_6
Description: NF14740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14740_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 142 - 403
Target Start/End: Original strand, 54022025 - 54022282
Alignment:
| Q |
142 |
tcaataaagttgtaacagaacatgtactaactaacattctttgggtctcaataattgattccccttttattcaaaaatcatcacatacatacaaaaaatg |
241 |
Q |
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| T |
54022025 |
tcaaaaaagttgtaacagaacatgtacta----acattctttgggtctcaatagttgattccccttttattcaaaaatcatcacatacatacaaaaaatg |
54022120 |
T |
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| Q |
242 |
aactttattacattcttaccccatcaagcaaaatgtttgaagacttgaagtctctatatataactgatttttctgaagtgtgtaagaaacccaaacctct |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54022121 |
aactttattacattcttaccccatcaagcaaaatgtttgaagacttgaagtctctatatataactgatttttctgaagtgtgtaagaaacccaaacctct |
54022220 |
T |
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| Q |
342 |
agcagctcctatggctatcttcaaccttatttcccaagacagtggttcagggcctgccaaac |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54022221 |
agcagctcctatggctatcttcaaccttatttcccaagacagtggttcagggcctgccaaac |
54022282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 54021924 - 54022031
Alignment:
| Q |
14 |
cataggtacccatgatccgtgtggttacatgtgatctaccgttgacaggtccaagctttgccaatccaaagtcagacaactttgcattgaaatcctgtta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54021924 |
cataggtacccatgatccgtgtggttacatgtgatctaccgttgacaggtccaagctttgccaatccaaagtcagacaactttgcattgaaatcctgtta |
54022023 |
T |
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| Q |
114 |
ttcaaaaa |
121 |
Q |
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|||||||| |
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| T |
54022024 |
ttcaaaaa |
54022031 |
T |
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