View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14740_low_7 (Length: 417)
Name: NF14740_low_7
Description: NF14740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14740_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 10 - 399
Target Start/End: Original strand, 38630107 - 38630496
Alignment:
| Q |
10 |
agaacctgtgaagaatattgattttggttttcactatcaatgaatagatgccgtagcaaggtatgtgaactagcgccatgcagatatacctatagacaag |
109 |
Q |
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| T |
38630107 |
agaatctgtgaagaatattgattttggttttcactatcaatgaatagatgccgtagcaaggtatgtgaactagcgccatgcagatatacctatagacaag |
38630206 |
T |
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| Q |
110 |
atacattagtgagaataacaagtattttgtatagaaagaaaaatggagaagacatggcatttgtatgttaatagtatatcttaccataagggagcccatg |
209 |
Q |
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| T |
38630207 |
atacattagtgagaataacaagtatttggtatagaaagaaaaatggagaagacatggcatttgtatgttaatagtatatcttaccataagggagcccatg |
38630306 |
T |
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| Q |
210 |
gaatattaagctcaagaaatgggtatggccacctgttagaggaagaaagttttagctgctgctgatgatacaaagaaggtaaaaatacagttacatttaa |
309 |
Q |
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| T |
38630307 |
gaatattaagctcaagaaatgggtatggccacctgttagaggaagaaagctttagctgctgctgatgatacaaagaaggtaaaaatacagttacatttaa |
38630406 |
T |
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| Q |
310 |
atttacatcttaccatgtggaaccacatgcgtggataacccattggaaaataacgtaggagcagctccagagcacaaaatatgctattct |
399 |
Q |
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| T |
38630407 |
atttacatcttaccatgtggaaccacatgcgtggataacccattggaaaataacgtaggagcagctccagagcacaaaatatgctattct |
38630496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 38695825 - 38695745
Alignment:
| Q |
38 |
tttcactatcaatgaatagatgccgtagcaaggtatgtgaactagcgccatgcagatatacctatagacaagatacattagtga |
121 |
Q |
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| T |
38695825 |
tttcactatcaataaatacatgtcgtagcagggtatgtgaactagcgcaaggcagat---cctatagacacgatgcattggtga |
38695745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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