View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14741_high_10 (Length: 265)
Name: NF14741_high_10
Description: NF14741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14741_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 10801888 - 10801642
Alignment:
| Q |
4 |
gagtagcaaaggaaaaaccaagaaaaactttcatgttatttagtctagcttcagaaactccaccagcaaaaattgatgatttgcctagattcataacttg |
103 |
Q |
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| T |
10801888 |
gagtaccaatggaaaaaccaagaaaaactttcatgttatttagtctagcttcagaaactccaccagcaaaaattgatgatttgcctagattaataacttg |
10801789 |
T |
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| Q |
104 |
tccggaacatccagcatatctagtgaaaagatcctttagtgcctctaaacaggattgtttccccttgcaaaagatcatgaggtcatcttcatagaaacaa |
203 |
Q |
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| T |
10801788 |
tccggaacatcaagcatatctagtgaaaagatcctttagtgcctctaaactggattgtttccccttgcaaaagatcatgaggtcatctgcatagaaacaa |
10801689 |
T |
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| Q |
204 |
tgagatgggatgtatgcacttcttgaagctttgattaaatccacttt |
250 |
Q |
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| T |
10801688 |
tgagatgggatgtatgcacttcttgaagctttgattaaatccacttt |
10801642 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 21759556 - 21759462
Alignment:
| Q |
45 |
agtctagcttcagaaactccaccagcaaaaattgatgatttgcctagattcataacttgtccggaacatccagcatatctagtgaaaagatcctt |
139 |
Q |
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| T |
21759556 |
agtctagcatcagaaactcccccaacaaaaatggaagatttattaagattcatcacctgaccagaacataaagcatatctagtgaaaagttcctt |
21759462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 22284087 - 22284160
Alignment:
| Q |
54 |
tcagaaactccaccagcaaaaattgatgatttgcctagattcataacttgtccggaacatccagcatatctagt |
127 |
Q |
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| T |
22284087 |
tcagaaataccaccagcaaaaatagatgatttacttatattaataacttgaccagagcatgcagcatatctagt |
22284160 |
T |
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