View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14741_high_5 (Length: 430)
Name: NF14741_high_5
Description: NF14741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14741_high_5 |
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| [»] chr6 (6 HSPs) |
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| [»] scaffold0196 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 48 - 430
Target Start/End: Complemental strand, 11740884 - 11740502
Alignment:
| Q |
48 |
cttatcttatgcatttcgcagtggcgaattgtcccttaggttagttttagatgttttatcatttttgggagcatttttgctactcttttgcacatacaag |
147 |
Q |
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| T |
11740884 |
cttatcttatgcatttcacagtggcgaattgtcccttaggttagttttagatgttttatcatttttgggagcatttttgctactcttttgcacatacaaa |
11740785 |
T |
|
| Q |
148 |
gtgtgtacgtatgaagacaccgacatggaaatcgacagaagtctacgtaccccattaaatagcgagttgaatgaagttgatcatgttagtcatgtaagtg |
247 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11740784 |
gtgtgtacgtatgaagacaccgacatggaaatcgacggaagtctacgtaccccattaaatagcgagttgaatgaagttgatcatgttagtcatgtaagtg |
11740685 |
T |
|
| Q |
248 |
taactcagttttccaaagcaggattctttagtttgatgtcattttggtggttgaatccattgattaaaaggggacaagaaaaaatacttcatgacgagga |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11740684 |
taactcagttttccaaagcaggattctttagtttgatgtcattttggtggttgaatccattgattaaaaggggacaagaaaaaatacttcatgacgagga |
11740585 |
T |
|
| Q |
348 |
cgttccaacgttgcgggagtctgaccgagcagaagtatgttattcaatgtttatagatcaactgaacaaactgaagcagaagg |
430 |
Q |
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| T |
11740584 |
cgttccaacgttgcgggagtctgaccgagcagaagcatgttattcaatgtttatagatcaactgaacagactaaagcagaagg |
11740502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 77 - 392
Target Start/End: Complemental strand, 12095080 - 12094765
Alignment:
| Q |
77 |
tgtcccttaggttagttttagatgttttatcatttttgggagcatttttgctactcttttgcacatacaaggtgtgtacgtatgaagacaccgacatgga |
176 |
Q |
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||||||||| | ||| |||||||||| |||| |||||||||| | ||||||| ||||||||||||||||| || |||| ||||||| ||||| ||| |
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| T |
12095080 |
tgtcccttaaggtagctttagatgttctatcttttttgggagtaattttgctgctcttttgcacatacaaagtatgtaaagatgaagatgtcgacaagga |
12094981 |
T |
|
| Q |
177 |
aatcgacagaagtctacgtaccccattaaatagcgagttgaatgaagttgatcatgttagtcatgtaagtgtaactcagttttccaaagcaggattcttt |
276 |
Q |
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||| | |||||||| | | | ||||||||| || | |||| ||||||| | || | | | |||||||||| | ||||||||||| ||| || || |
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| T |
12094980 |
aataaatggaagtctatatgcttctttaaatagccagatccatgatgttgatcctcttggccgtataagtgtaaccccattttccaaagccggactcctt |
12094881 |
T |
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| Q |
277 |
agtttgatgtcattttggtggttgaatccattgattaaaaggggacaagaaaaaatacttcatgacgaggacgttccaacgttgcgggagtctgaccgag |
376 |
Q |
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||| ||||||||||||||||||||||||| | || |||| ||| ||| | |||| |||| | ||||||||| | |||| ||||| ||| | || ||| |
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| T |
12094880 |
agtcggatgtcattttggtggttgaatccactaatgaaaaagggtcaaaataaaacacttgaggacgaggacatcccaaagttgcaagagccggatagag |
12094781 |
T |
|
| Q |
377 |
cagaagtatgttattc |
392 |
Q |
| |
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|||||||||||||||| |
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| T |
12094780 |
cagaagtatgttattc |
12094765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 413
Target Start/End: Original strand, 11754855 - 11755191
Alignment:
| Q |
77 |
tgtcccttaggttagttttagatgttttatcatttttgggagcatttttgctactcttttgcacatacaaggtgtgtacgtatgaagacaccgacatgga |
176 |
Q |
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||||||||| | ||| |||||||||| |||| |||||||||| | |||| || ||||| ||||||||||| || |||| ||||||| || |||| ||| |
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| T |
11754855 |
tgtcccttaagatagctttagatgttctatcttttttgggagtacttttactgctcttctgcacatacaaagtatgtaaagatgaagatactgacaagga |
11754954 |
T |
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| Q |
177 |
aatcgacagaagtctacgtaccccattaaatagcgagttgaatgaagttgatcatgttagtcatgtaagtgtaactcagttttccaaagcaggattcttt |
276 |
Q |
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| | || |||||||| | |||| || |||||| | | ||| ||||||| |||| | ||| ||||| |||| | ||| ||||||| ||| || || |
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| T |
11754955 |
agtagatggaagtctatatgcccctttgaatagccgggtccttgatgttgatcctgttcgacatataagtctaaccccatttgccaaagctggactcctt |
11755054 |
T |
|
| Q |
277 |
agtttgatgtcattttggtggttgaatccattgattaaaaggggacaagaaaaaatacttcatgacgaggacgttccaacgttgcgggagtctgaccgag |
376 |
Q |
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||| ||||||||||||||||||||||||| |||| |||| ||| ||| | |||| ||| | | | | ||| | |||| ||||| ||||| || ||| |
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| T |
11755055 |
agtcggatgtcattttggtggttgaatccactgatgaaaaagggtcaaaagaaaacactcgagggcaaagacatcccaaagttgcaagagtcggatagag |
11755154 |
T |
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| Q |
377 |
cagaagtatgttattcaatgtttatagatcaactgaa |
413 |
Q |
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|||||||||||||||| | |||||||| ||| |||| |
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| T |
11755155 |
cagaagtatgttattcgttatttatagaacaattgaa |
11755191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 338
Target Start/End: Complemental strand, 11711349 - 11711271
Alignment:
| Q |
260 |
ccaaagcaggattctttagtttgatgtcattttggtggttgaatccattgattaaaaggggacaagaaaaaatacttca |
338 |
Q |
| |
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||||||| |||||||||||| ||| || ||||||||||||||||| ||||| |||||||| ||| |||||| |||||| |
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| T |
11711349 |
ccaaagctggattctttagtaagatatctttttggtggttgaatccgttgatgaaaaggggtcaacaaaaaacacttca |
11711271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 347
Target Start/End: Original strand, 11662243 - 11662301
Alignment:
| Q |
289 |
ttttggtggttgaatccattgattaaaaggggacaagaaaaaatacttcatgacgagga |
347 |
Q |
| |
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|||| |||||||||||||||||| |||||||| ||||||||| |||||| || ||||| |
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| T |
11662243 |
ttttcgtggttgaatccattgatgaaaaggggtcaagaaaaagaacttcaagatgagga |
11662301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 11674826 - 11674786
Alignment:
| Q |
289 |
ttttggtggttgaatccattgattaaaaggggacaagaaaa |
329 |
Q |
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|||||||||||||||||||| || |||||||| |||||||| |
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| T |
11674826 |
ttttggtggttgaatccattaatgaaaaggggtcaagaaaa |
11674786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 347
Target Start/End: Original strand, 11752 - 11837
Alignment:
| Q |
262 |
aaagcaggattctttagtttgatgtcattttggtggttgaatccattgattaaaaggggacaagaaaaaatacttcatgacgagga |
347 |
Q |
| |
|
||||| |||||||||||| ||| |||||||||||||| ||||||||||| |||| | | |||||||||| |||||| || ||||| |
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| T |
11752 |
aaagctggattctttagtaagatttcattttggtggttaaatccattgatgaaaacgagtcaagaaaaaacacttcaggatgagga |
11837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 336
Target Start/End: Complemental strand, 9775 - 9707
Alignment:
| Q |
268 |
ggattctttagtttgatgtcattttggtggttgaatccattgattaaaaggggacaagaaaaaatactt |
336 |
Q |
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|||||||| ||| ||| || ||||||||||| ||||||||||| |||||||| ||||| |||| |||| |
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| T |
9775 |
ggattcttcagtaagatttcgttttggtggttaaatccattgatgaaaaggggtcaagagaaaacactt |
9707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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