View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14741_low_1 (Length: 662)
Name: NF14741_low_1
Description: NF14741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14741_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 157 - 474
Target Start/End: Original strand, 40085953 - 40086255
Alignment:
| Q |
157 |
cttgggaaatgttctcatcaaacggttgtccgagcctacttggcttccgtaccttagcttcggacgacatgtcatcatctttgcttcggttaaacagtgt |
256 |
Q |
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| T |
40085953 |
cttgggaaatgttctcatcaaacggttgtccgagcctacttggcttccgtaccttagcttcggacgacatgtcatcatctttgcttcgggtaaacagtgt |
40086052 |
T |
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| Q |
257 |
aaatcacgtgactcgtatggcttttatgtctcttccgaacctgaagcaaaaaacacgttggatagctatggaagctgttaaaatgattggtcattatttt |
356 |
Q |
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| T |
40086053 |
aaatcacgtgactcgtatggcttttatgtctcttccgaacctgaagcaaaaaacacgttggatagctatggaagctgttaaaatgattggtcattatttt |
40086152 |
T |
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| Q |
357 |
actaccaccacgtggcaaatattgacccaattaatgacttgtaaaaaattaattaatataatattttgttgacaaattgtaagacaacactagggacata |
456 |
Q |
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| T |
40086153 |
actaccaccacgtggcaaatattgacccaattactgccttgtaaaaa---------------attttgttgacaaattataagacaacactagggacata |
40086237 |
T |
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| Q |
457 |
tttctcacttctctaaaa |
474 |
Q |
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| T |
40086238 |
tttctcacttctctaaaa |
40086255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 475 - 641
Target Start/End: Original strand, 40086289 - 40086451
Alignment:
| Q |
475 |
tttaacatctttcattttctattaaatagtgaaaaatatgattaatttaactaattagtgaggagaagtgtgacaaaagcttggcaccaaaggaacaaaa |
574 |
Q |
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| T |
40086289 |
tttaacatctttcattttctattaaatagtgaaaaatatgattaatttaacta----gtgaggagaagtgtgacaaaagcttggcaccaaaggaacaaaa |
40086384 |
T |
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| Q |
575 |
ttagcacactgggaagagacgtgacagaaggtaagtgtgggttttaattttatgtggggatagtagt |
641 |
Q |
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| T |
40086385 |
ttagcacactgggaagagacatgacagagggtaagtgtgggttttaattttatgtgaggatagtagt |
40086451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 40085810 - 40085907
Alignment:
| Q |
14 |
gcagagagtaatgaatattgagaacgaacacaacaactatgttgctactttttactactttcttttgttgttatctttgtacttctcttccaacgaac |
111 |
Q |
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| T |
40085810 |
gcagagagtaatgaatattgagaacgaacacaacaactatgttgctactttttactactttcttttgttgttatctttgtacttctcttccaacgaac |
40085907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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