View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14741_low_10 (Length: 343)
Name: NF14741_low_10
Description: NF14741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14741_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 45549199 - 45548876
Alignment:
| Q |
1 |
caacaaaatcaaaagatgagcatccaacaaccactaacagaaagtgaaaaccacctcaagtggattttggtcacgagtcaattattcgtcaacactgcag |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45549199 |
caacaaaatcaaaatatgagcatccaacaaccactaacagaaagtgaaaaccacctcaagtggattttggtcacgagtcaattattcgtcaacactgcag |
45549100 |
T |
|
| Q |
101 |
aagcacttttcagactaaacatcccgtttggtattcttcaaggtaatcatcaagacagtcaagaccaaagtagcaagctgatattagattgcggctatga |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45549099 |
aagcacttttcagactaaacatcccgttcggtattcttcaaggtaatcatcaagacagtcaagaccaacgtagcaagctgatattagattgcggctatga |
45549000 |
T |
|
| Q |
201 |
agtgatgaaaagaaaggggatacggcaggaactcaaaattcatacttgttcaaaaatatcatcaatcactagtactgttaacttgataagatctctagat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45548999 |
agtgatgaaaagaaaggggatacggcaggaactcaaagttcatacttgttcaaaaatatcatcaatcactagtactgttaacttgataagatctctagat |
45548900 |
T |
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| Q |
301 |
gacttggttaagaagctgaacgag |
324 |
Q |
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|||||||||||||||||||||||| |
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| T |
45548899 |
gacttggttaagaagctgaacgag |
45548876 |
T |
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