View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14741_low_18 (Length: 205)
Name: NF14741_low_18
Description: NF14741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14741_low_18 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 12328588 - 12328401
Alignment:
| Q |
17 |
aaggtaatcgcagccgactttttctttttcagattcatttaataagttacgtattcgtattataatataggctagatacatcagatatttaataaacata |
116 |
Q |
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| T |
12328588 |
aaggtaatcgcagacgactttttctttttcagattcatttaataagttacgtattcgtattataatataggctagatacatcaattatttaa-aaacata |
12328490 |
T |
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| Q |
117 |
aatgacaaacatgcaggtgttcggtttgctatcacattgggttgatgatccaaactcaaaggcatacaaacttcatttagcccgtatcc |
205 |
Q |
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| T |
12328489 |
aatggcaaacatgcaggtgttcggtttgctatcacgttgggttgatgatccaaactcaaaggcatacaaacttcatttagcccgtatcc |
12328401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 35183385 - 35183333
Alignment:
| Q |
153 |
ttgggttgatgatccaaactcaaaggcatacaaacttcatttagcccgtatcc |
205 |
Q |
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| T |
35183385 |
ttgggttgaagacccaaactcagaggcatacaaacttcatttagcccgaatcc |
35183333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 12295091 - 12295037
Alignment:
| Q |
151 |
cattgggttgatgatccaaactcaaaggcatacaaacttcatttagcccgtatcc |
205 |
Q |
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| T |
12295091 |
cattgggttgatgaccaagactcagaggcatataaacatcatttagcccgtatcc |
12295037 |
T |
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