View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14741_low_7 (Length: 396)
Name: NF14741_low_7
Description: NF14741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14741_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 13 - 380
Target Start/End: Complemental strand, 10288209 - 10287842
Alignment:
| Q |
13 |
cagagacatgagaagtaattccaacaattgcccgcctttctttataagatgtccaggtaacagtatacagaccagcaatgatcaaacacccccctatgat |
112 |
Q |
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| T |
10288209 |
cagagacatgagaagtaattccaacaattgcccgcctttctttataagatgtccaggtaacagtatacagaccagcaatgatcaaacacccccctatgat |
10288110 |
T |
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| Q |
113 |
actgttgtcacatgaataataaaaatgagaataataagaaatttctcgataacataatttcagaatgaattaaatagaaagaggaagaacttcattagtt |
212 |
Q |
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| T |
10288109 |
actgttgtcacatgaataataaaaatgagaataataagaaatttctcgataacataatttcagaatgaattaaatagaaagaggaagaacttcattagtt |
10288010 |
T |
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| Q |
213 |
ttaactagataaaacatcttattaagtcctatctattaaaaattgtttcaagatagaaagtggtttattgtagtttttcattcttttcataaaaatcttg |
312 |
Q |
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| T |
10288009 |
ttaactagataaaacatcttattaagtcctatctattaaaaattgtttcaagatagaaagtggtttattgtagtttttcattcttttcataaaaatcttg |
10287910 |
T |
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| Q |
313 |
ccctttgcagttgatgagtagacttgtagccatttagaatgcatgaatcggtaactgaaagtaaaagt |
380 |
Q |
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| T |
10287909 |
ccctttgcagttgacgagtagacttgtagccatttagaatgcatgaatcagtaactgaaagtaaaagt |
10287842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 10278439 - 10278634
Alignment:
| Q |
24 |
gaagtaattccaacaattgcccgcctttctttataagatgtccaggtaacagtatacagaccagcaatgatcaaacacccccctatgatactgttgtcac |
123 |
Q |
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| T |
10278439 |
gaagtaatttcaacaattccctgtttttctttataagatgcccatgtaacaatgtaaagaccagctatgatcaaagatccccctatgatactgttgtcac |
10278538 |
T |
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| Q |
124 |
atgaataataaaaatgagaataataagaaatttctcgataacataatttcagaatgaattaaatagaaagaggaagaacttcattagttttaacta |
219 |
Q |
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| T |
10278539 |
atgaattataaaaataactacaataagaaatttcttgataacataatttcagaatgcatgctatagaaagaggaagaacatcattaagtttaacta |
10278634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 10296757 - 10296569
Alignment:
| Q |
21 |
tgagaagtaattccaacaattgcccgcctttctttataagatgtccaggtaacagtatacagaccagcaatgatcaaacacccccctatgatactgttgt |
120 |
Q |
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| T |
10296757 |
tgagaagtagttccaacagttgcctgtctttgtttaaaagatgcccaggtaacagtataaagtccaacaatgatcaaagacccccctattatactgttgt |
10296658 |
T |
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| Q |
121 |
cacatgaataataaaaatgagaataataagaaatttctcgataacataatttcagaatgaattaaatagaaagaggaagaacttcatta |
209 |
Q |
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| T |
10296657 |
catatggattataaaagtaagaatagtaagaaatttctcaataacataatttcagaatgcatgttattgaaagaggaaaaacttgatta |
10296569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 10304147 - 10303954
Alignment:
| Q |
14 |
agagacatgagaagtaattccaacaattgcccgcctttctttataagatgtccaggtaacagtatacagaccagcaatgatcaaacacccccctatgata |
113 |
Q |
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|||| ||||||||| |||| ||| | ||||| | |||||||||||||||| |||||||||| | | |||||||||||||||||| |||||||||||||| |
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| T |
10304147 |
agagtcatgagaagaaatttcaagagttgcctgtctttctttataagatgcccaggtaacaccaaagagaccagcaatgatcaaagacccccctatgata |
10304048 |
T |
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| Q |
114 |
ctgttgtcacatgaataataaaaatgagaataataagaaatttctcgataacataatttcagaatgaattaaatagaaagaggaagaacttcatta |
209 |
Q |
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| T |
10304047 |
ctgttgtcacatggagaataaaaatga-accaataagaaatttcttggtaacataa-ttcagaatgaatgctatagaaagcagaagaacttgatta |
10303954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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