View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14741_low_8 (Length: 365)
Name: NF14741_low_8
Description: NF14741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14741_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 47 - 348
Target Start/End: Original strand, 41221451 - 41221756
Alignment:
| Q |
47 |
aaatatcaaatgacaatgttaaa-gatcaataatttctttatcaactttcgtcataagcttcttcacatcagacatttagcaacnnnnnnntcgatagca |
145 |
Q |
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| T |
41221451 |
aaatatcaaatgacaatgttaaaagatcaataatttctttatcaactttcgtcataagcttcttcacatcagacatttagcaacaaaaaaatcgatagca |
41221550 |
T |
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| Q |
146 |
tatttaaattcaatataacactgaaaggaaataagatctgatcgaaggatgacatgtgggcttgatacttgttgttctgaggcgtgagcagaaaaatcca |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41221551 |
tatttaaattcaatataacactgaaaggaaataagatct----gaaggatgacatgtgggcttgatacttgttgttctgaggcgtgagcagaaaaatcca |
41221646 |
T |
|
| Q |
246 |
-------aaagagcaaaatattattatttgttattgcttgagtataaaatggtaaattaaatttcattgcaatcatgtattactgtcgtgtacaagtgta |
338 |
Q |
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| T |
41221647 |
acatatgaaagagcaaaaaaatattatttgttattgcttgagtataaaatggtaaattaaatttcattgcaatcatgtattactgtcgtgtacaagtgta |
41221746 |
T |
|
| Q |
339 |
taagagtaag |
348 |
Q |
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|||||||||| |
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| T |
41221747 |
taagagtaag |
41221756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 41216295 - 41216346
Alignment:
| Q |
1 |
caaattccaatcaatcctatctatgatttacacttaacacgttaacaaatat |
52 |
Q |
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| T |
41216295 |
caaattccaatcaatcctatctatgatttacacttaatacgtaaacaaatat |
41216346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 21757324 - 21757220
Alignment:
| Q |
1 |
caaattccaatcaatcctatctatgatttacacttaacacgttaacaaatatcaaatgacaatgttaaagatcaataatttctttatcaactttcgtcat |
100 |
Q |
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||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||| ||| |
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| T |
21757324 |
caaattccaattaatcctttctatgatttacacttaacacgttaacaaatatcaaacgacaa--------aacaataatttctttatcaactttcgacat |
21757233 |
T |
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| Q |
101 |
aagcttcttcaca |
113 |
Q |
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|| |||| ||||| |
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| T |
21757232 |
aaacttcatcaca |
21757220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 7313758 - 7313802
Alignment:
| Q |
202 |
tgggcttgatacttgttgttctgaggcgtgagcagaaaaatccaa |
246 |
Q |
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| T |
7313758 |
tgggcttgatacttgttgttctgaggcgtgagcagaaaaatccaa |
7313802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 25760855 - 25760919
Alignment:
| Q |
42 |
ttaacaaatatcaaatgacaatgttaaagatcaataatttctttatcaactttcgtcataagctt |
106 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| |
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| T |
25760855 |
ttaacaaatatcaaatgacacctttaaagatcaataatttctttatcaacttcagacataagctt |
25760919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 16706537 - 16706601
Alignment:
| Q |
42 |
ttaacaaatatcaaatgacaatgttaaagatcaataatttctttatcaactttcgtcataagctt |
106 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| |
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| T |
16706537 |
ttaacaaatatcaaatgacacctttaaagatcaataatttctttatcaacttcagacataagctt |
16706601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 21601414 - 21601350
Alignment:
| Q |
42 |
ttaacaaatatcaaatgacaatgttaaagatcaataatttctttatcaactttcgtcataagctt |
106 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| |
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| T |
21601414 |
ttaacaaatatcaaatgacacctttaaagatcaataatttctttatcaacttcagacataagctt |
21601350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 8797059 - 8797008
Alignment:
| Q |
42 |
ttaacaaatatcaaatgacaatgttaaagatcaataatttctttatcaactt |
93 |
Q |
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|||||||||||||||| |||| |||||||||||| ||||||||||||||| |
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| T |
8797059 |
ttaacaaatatcaaataacaactttaaagatcaatcgtttctttatcaactt |
8797008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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