View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14741_low_9 (Length: 364)
Name: NF14741_low_9
Description: NF14741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14741_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 5 - 264
Target Start/End: Complemental strand, 18280795 - 18280537
Alignment:
| Q |
5 |
agacaataccagaccaccaacccatccaagtaaaacaacatgcctcaagacaccatacacctacaagaggccaaactaattcttctcataacccagaaga |
104 |
Q |
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| T |
18280795 |
agacaataccagaccaccaaccc-tccaagtaaaacaacatgcctcaagacaccatacacctacaagaggccaaactaattcttctcataacccagaaga |
18280697 |
T |
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| Q |
105 |
agaaaacataaacatgattggataggacttagtattatagtcatagtaattcatttgaagtatgttataaagtgatacccgacatcatcagacctataac |
204 |
Q |
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| T |
18280696 |
agaaaacataaacatgattggataggacttagtattatagtcatagtaattcatttgaagtatgttataaagtgatacccgacatcatcagacctataac |
18280597 |
T |
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| Q |
205 |
ttgttttcttcattttcaagtttcaacaactatatatgcatatggatttagatcctctaa |
264 |
Q |
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| T |
18280596 |
ttgttttcttcatgttcaagtttcagcaactatatatgcatacggatttggatcctctaa |
18280537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 8295913 - 8296143
Alignment:
| Q |
5 |
agacaataccagaccaccaacccatccaagtaaaacaacatgcctcaagacaccatacacctacaagaggccaaactaattcttctcataacccagaaga |
104 |
Q |
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| T |
8295913 |
agacaataccagaccaccaacccctccaggtaaaacaacacgcctcaagacaccatacacctacaagaggccaaactaattcttttcataacccagaaga |
8296012 |
T |
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| Q |
105 |
agaaaacataaacatgattggataggacttagtattatagtcatagtaattcatttgaagtatgttataaagtgatacccgacatcatcagacctataac |
204 |
Q |
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| T |
8296013 |
agaaaacaaaaacatgattggctcggacttagtattatagtcatattaattcattttaattatgtcataaagtgatacccgacatcatcagacctataaa |
8296112 |
T |
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| Q |
205 |
ttgttttcttcattttcaagtttcaacaact |
235 |
Q |
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| T |
8296113 |
ttgttttcttcggtttaaagtttcaacaact |
8296143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 268 - 364
Target Start/End: Complemental strand, 18280362 - 18280266
Alignment:
| Q |
268 |
aaatggttgcttccaattgaaattatgaattatgaggatcatcaattcattgatttttctcagttggtctgttagagaagaatttgattgttataat |
364 |
Q |
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| T |
18280362 |
aaatggttgcttccaattgaaattatgaattatgaggatcatcaattcattgatttttctcagttggtccgttagagaagaatttgattggtataat |
18280266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 268 - 364
Target Start/End: Original strand, 8296383 - 8296479
Alignment:
| Q |
268 |
aaatggttgcttccaattgaaattatgaattatgaggatcatcaattcattgatttttctcagttggtctgttagagaagaatttgattgttataat |
364 |
Q |
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| T |
8296383 |
aaatggttgcttccaattgaaattatgaaacatgaggatcaacaattcatatatttttctcatttggtaagttagagaagaatttgattgttataat |
8296479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 359
Target Start/End: Original strand, 1144723 - 1144815
Alignment:
| Q |
268 |
aaatggttgcttccaattgaaattatgaattatgaggatcatcaattcattgattttt-ctcagttggtctgttagagaagaatttgattgtt |
359 |
Q |
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| T |
1144723 |
aaatggttccttctaattaaaatgatgaaacatgagaatcatcaattcattgatttttcctcatttggttagtgagagaagaatttgattgtt |
1144815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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