View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14742_high_1 (Length: 597)
Name: NF14742_high_1
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14742_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 14 - 584
Target Start/End: Complemental strand, 47119635 - 47119081
Alignment:
| Q |
14 |
gaaatgaaatgaaggtaacatggacaaatgagattggatagacacaactatcgctgagtcagcttttcacattgttgtaataagccgagtttgaggtggg |
113 |
Q |
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| T |
47119635 |
gaaatgaaatgaaggtaacatggacaaatgagattggatagacacaactatcgctgagtcagcttttcacattgttgtaataagccgagtttgaggtggg |
47119536 |
T |
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| Q |
114 |
gtccacaaaatgggcgcgtttcctaactaccgtacccgcggaaattatctgcatggacgattatgtccttgtgaagtcatcgttcgttggtacatacata |
213 |
Q |
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| T |
47119535 |
gtccacaaaatgggcgcgtttcctaactaccgtacccgcggaaattatctgcatggacgattatgtccttgtgaagtcatcgttcgttggtacataca-- |
47119438 |
T |
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| Q |
214 |
caggtcaattcacgacaaaggctatctcatcagcatattccttcctatgtcatgataagtactcaatcattttttaaacgtgttattttatataaatgag |
313 |
Q |
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| T |
47119437 |
--ggtcaattcacgacaaaggttatctcatcagcatattccttcctatgtcatgat--------------tttttaaacgtgttattttatataaatgag |
47119354 |
T |
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| Q |
314 |
ttgtttacttttt-gtaaaaatcgattaatttttaaaatatatataagaaaa-cataatttgatattcattcgttgtgaaaattttaagctatcaaatag |
411 |
Q |
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| T |
47119353 |
ttgtttacttttttgtaaaaatcgattaatttttaaaatatatataagaaaaacataatttgatattcattcgctgtgaaaattttaagctatcaaatag |
47119254 |
T |
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| Q |
412 |
gggaacttctgttaatgcattatcaatattagtagtagttccttctattaatgcattgatattaaaacttaggaaacagatgtaagaaggggacaaaata |
511 |
Q |
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| T |
47119253 |
gggaacttctgttaatgcatcatcaatattagtagtagttccttctattaatgcattgatattaaaacttaggaaacagatgtaagaaggggacaaaata |
47119154 |
T |
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| Q |
512 |
gggtattggctttctgttaccaatcatgtcgtagctttgtgttacaactcagatatgcatataatttgtttat |
584 |
Q |
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| T |
47119153 |
gggtattggctttctgttaccaatcatgtcatagctttgtgttacaactcagatatgcatataatttgtttat |
47119081 |
T |
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